View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4435-Insertion-7 (Length: 305)
Name: NF4435-Insertion-7
Description: NF4435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4435-Insertion-7 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 8 - 305
Target Start/End: Complemental strand, 592493 - 592196
Alignment:
| Q |
8 |
ggtataataatggtatcaaacttctgagacttgattgttggttactttatgttgataattgtaaattcctctcttgcaacnnnnnnnggctgtgttgttt |
107 |
Q |
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| T |
592493 |
ggtataataatggtatcaaacttctgagacttgattgtttgttactttatgttgataattgtaaattcctctcttgcagctttctttggctgtgttgttt |
592394 |
T |
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| Q |
108 |
tctgaaacatgaaccaaatttacaggactatttctcaaagtggggatcaagcggtgaagttgatttgaagtatgagcttgagcatctgatcatcttgaca |
207 |
Q |
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| T |
592393 |
tctcaaacatgaaccaaatttacaggactatttctcaaagtggggatcaagcggtgaagttgatttgaagtatgagcttgagcatctgatcatcttgaca |
592294 |
T |
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| Q |
208 |
accagtagatgccttttgggtcgtgaagttcgtgacaagctcttcgatgatgtctctgcattgttccacgatctcgatgacggaatgcttccaatcag |
305 |
Q |
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| T |
592293 |
gccagtagatgccttttgggtcgtgaagttcgtgacaagctcttcgatgatgtctctgcattgttccacgatctcgataatggaatgcttccaatcag |
592196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 8 - 305
Target Start/End: Original strand, 579935 - 580231
Alignment:
| Q |
8 |
ggtataataatggtatcaaacttctgagacttgattgttggttactttatgttgataattgtaaattcctctcttgcaacnnnnnnnggctgtgttgttt |
107 |
Q |
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||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||| ||| |
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| T |
579935 |
ggtataataatggtatcaaacctctgagacttgattgtttgtttctttatgttgataattgtaaattcctctcttgcaactttctttcactgtgttattt |
580034 |
T |
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| Q |
108 |
tctgaaacatgaaccaaatttacaggactatttctcaaagtggggatcaagcggtgaagttgatttgaagtatgagcttgagcatctgatcatcttgaca |
207 |
Q |
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| T |
580035 |
-ctcaaacatgaaccaaatttacaggactatttctcaaagtggggatcaagcggtgaagttgatttgaagtatgagcttgagcatctgatcatcttgaca |
580133 |
T |
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| Q |
208 |
accagtagatgccttttgggtcgtgaagttcgtgacaagctcttcgatgatgtctctgcattgttccacgatctcgatgacggaatgcttccaatcag |
305 |
Q |
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| T |
580134 |
gccagtagatgtctcttgggtcgtgaagttcgtgacaagctcttcgatgatgtctctgcattgttccacgatctcgataacggaatgcttccaatcag |
580231 |
T |
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