View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4435-Insertion-8 (Length: 273)
Name: NF4435-Insertion-8
Description: NF4435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4435-Insertion-8 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 7 - 273
Target Start/End: Original strand, 31321674 - 31321940
Alignment:
| Q |
7 |
aattgaagagtttatagatagtgtttatccaatggaaggagcattgtcgccaggtgagaattggaatttgtatacttctgctcatcaaatggggagttgt |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31321674 |
aattgaagagtttatagatagtgtttatccaatggaaggagcattgtggccaggtgagaattggaatttgtatacttctgctcatcaaatggggagttgt |
31321773 |
T |
|
| Q |
107 |
agaatgggagtgaatgaaaaggaaggtgctgttgatgaaaatggtgagagttgggaagctgaagggttgtttgtttgtgatgctagtgttcttccaactg |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31321774 |
agaatgggagtgaatgaaaaggaaggtgctgttgatgaaaatggtgagagttgggaagctgaagggttgtttgtttgtgatgctagtgttcttccaactg |
31321873 |
T |
|
| Q |
207 |
ctgttggtgttaatcctatgattactattcaatcaactgcattttgtatttcaaataggattgtaga |
273 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31321874 |
ctgttggtgttaatcctatgatcactattcaatcaactgcattttgtatttcaaataggattgtaga |
31321940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 7 - 273
Target Start/End: Original strand, 31333927 - 31334193
Alignment:
| Q |
7 |
aattgaagagtttatagatagtgtttatccaatggaaggagcattgtcgccaggtgagaattggaatttgtatacttctgctcatcaaatggggagttgt |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31333927 |
aattgaagagtttatagatagtgtttatccaatggaaggagcattgtggccaggtgagaattggaatttgtatacttctgctcatcaaatggggagttgt |
31334026 |
T |
|
| Q |
107 |
agaatgggagtgaatgaaaaggaaggtgctgttgatgaaaatggtgagagttgggaagctgaagggttgtttgtttgtgatgctagtgttcttccaactg |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31334027 |
agaatgggagtgaatgaaaaggaaggtgctgttgatgaaaatggtgagagttgggaagctgaagggttgtttgtttgtgatgctagtgttcttccaactg |
31334126 |
T |
|
| Q |
207 |
ctgttggtgttaatcctatgattactattcaatcaactgcattttgtatttcaaataggattgtaga |
273 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31334127 |
ctgttggtgttaatcctatgatcactattcaatcaactgcattttgtatttcaaataggattgtaga |
31334193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 82 - 240
Target Start/End: Original strand, 39110404 - 39110562
Alignment:
| Q |
82 |
ttctgctcatcaaatggggagttgtagaatgggagtgaatgaaaaggaaggtgctgttgatgaaaatggtgagagttgggaagctgaagggttgtttgtt |
181 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||| ||||||| | || ||||| |||||||| ||||| || ||||||||||| ||||||||| ||| |
|
|
| T |
39110404 |
ttctgcacatcaaatgggaagttgtagaatgggtaagaatgaagaagagggtgcagttgatgagaatggagaaagttgggaagcaaaagggttgtatgtg |
39110503 |
T |
|
| Q |
182 |
tgtgatgctagtgttcttccaactgctgttggtgttaatcctatgattactattcaatc |
240 |
Q |
| |
|
||||||| |||||| | || | ||| ||||||||||| |||||| | || |||||||| |
|
|
| T |
39110504 |
tgtgatggaagtgttttgcctagtgcagttggtgttaaccctatggtaaccattcaatc |
39110562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 67 - 237
Target Start/End: Complemental strand, 33521232 - 33521062
Alignment:
| Q |
67 |
ttggaatttgtatacttctgctcatcaaatggggagttgtagaatgggagtgaatgaaaaggaaggtgctgttgatgaaaatggtgagagttgggaagct |
166 |
Q |
| |
|
||||||| ||||| | |||||||| || |||||||||||||| || ||| | | ||| |||||||| | |||||||||||||| ||| |||||||||| |
|
|
| T |
33521232 |
ttggaatatgtatgcatctgctcaccagatggggagttgtaggataggaatcactgataaggaaggcacggttgatgaaaatggacagaattgggaagct |
33521133 |
T |
|
| Q |
167 |
gaagggttgtttgtttgtgatgctagtgttcttccaactgctgttggtgttaatcctatgattactattca |
237 |
Q |
| |
|
||||| | ||||| |||||||| ||| | |||||||||| | ||| | ||||| ||||| |||||||| |
|
|
| T |
33521132 |
gaaggactatttgtgtgtgatgcaagtttgtttccaactgccataggtatcaatcccatgataactattca |
33521062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 10926283 - 10926339
Alignment:
| Q |
208 |
tgttggtgttaatcctatgattactattcaatcaactgcattttgtatttcaaatag |
264 |
Q |
| |
|
|||| ||||||||||| | || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
10926283 |
tgttagtgttaatcctctaataactattcaatcaactgcattttgtatttcaaatag |
10926339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University