View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4435_high_1 (Length: 501)
Name: NF4435_high_1
Description: NF4435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4435_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 285 - 485
Target Start/End: Original strand, 48287353 - 48287553
Alignment:
| Q |
285 |
aaaccaccaattcagacatacactacgttttacctataatgtagctttgaaatttgcttggtttattatcatttgtttttggatgaccttgtatatatat |
384 |
Q |
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| T |
48287353 |
aaaccaccaattcagacatacactacgttttacctataatgtagctttgaaatttgcttggtttattatcatttgtttttggatgaccttgtatatatat |
48287452 |
T |
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| Q |
385 |
gtttacttgtatatttttcatcaaatgacttgctattctaacttaagttgttgattgatttgtttatgattgattacaggatcaaaatatgatgagttgg |
484 |
Q |
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| T |
48287453 |
gtttacttgtatatttttcatcaaatgacttgctattctaacttaagttgttgatggatttgtttatgattgattacaggatcaaaatatgatgagttgg |
48287552 |
T |
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| Q |
485 |
g |
485 |
Q |
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| T |
48287553 |
g |
48287553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 5 - 177
Target Start/End: Original strand, 48287184 - 48287355
Alignment:
| Q |
5 |
aaactatttttcaaaaggtgacaatctgcaagatcagactatccaaatttcaaccttaaaatgttaatatcaaacnnnnnnnnnnnnnctattttaagat |
104 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
48287184 |
aaaccatttttcaaaaggtgacaatctgcaagatcagactatccaaatttcaaccttaaaatgttaatatcaaacaaaaataaaaaa-ctattttaagat |
48287282 |
T |
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| Q |
105 |
ttgaactattcaatcttgattgggtggtcccatttcaatgtgtaaactttcaagtagaaacaaaacataaaaa |
177 |
Q |
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| T |
48287283 |
ttgaactattcaatcttgattgggtggtcccatttcaatgtgtaaactttcaagtagaaacaaaacataaaaa |
48287355 |
T |
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