View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4435_high_2 (Length: 424)
Name: NF4435_high_2
Description: NF4435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4435_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 405; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Complemental strand, 11903513 - 11903109
Alignment:
| Q |
1 |
atagtaacatgaagaatgtcaaaagaaattttgagaaaattaccatggttggcagagaaaatgaaaagaaggagattatagatcaactactgaagttgaa |
100 |
Q |
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| T |
11903513 |
atagtaacatgaagaatgtcaaaagaaattttgagaaaattaccatggttggcagagaaaatgaaaagaaggagattatagatcaactactgaagttgaa |
11903414 |
T |
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| Q |
101 |
caaccctgctgatgatttcgttcctgttattgtcattgttggtgttcctggaattgggaaaacaaaacttgcaagtcttgtttgcgaagatgaacaagtc |
200 |
Q |
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| T |
11903413 |
caaccctgctgatgatttcgttcctgttattgtcattgttggtgttcctggaattgggaaaacaaaacttgcaagtcttgtttgcgaagatgaacaagtc |
11903314 |
T |
|
| Q |
201 |
aaagctcattttggtttcgaaccaatttggatccgttctctccatgaaacctttgatgtggaatacattgctaacttagctatgaccacagtcattgatg |
300 |
Q |
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| T |
11903313 |
aaagctcattttggtttcgaaccaatttggatccgttctctccatgaaacctttgatgtggaatacattgctaacttagctatgaccacagtcattgatg |
11903214 |
T |
|
| Q |
301 |
gaagtgtacgccgcctacttgtgctcgatgatttgcgaattgagattaagcatgatcttgaaaagttgcaaaagaaattaactgaatctggcggtaccag |
400 |
Q |
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| T |
11903213 |
gaagtgtacgccgcctacttgtgctcgatgatttgcgaattgagattaagcatgatcttgaaaagttgcaaaagaaattaactgaatctggcggtaccag |
11903114 |
T |
|
| Q |
401 |
ttggg |
405 |
Q |
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| T |
11903113 |
ttggg |
11903109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 57 - 264
Target Start/End: Original strand, 11730745 - 11730955
Alignment:
| Q |
57 |
gaaaatgaaaagaaggagattatagatcaactactgaagttgaacaaccctgctgatgatttc---gttcctgttattgtcattgttggtgttcctggaa |
153 |
Q |
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| T |
11730745 |
gaaaaagagaagaaagagcttgtagatcaactacttaacttgaacaattctactgatgattttcatgttggtgtttttgtcattgttggtgttccgggaa |
11730844 |
T |
|
| Q |
154 |
ttgggaaaacaaaacttgcaagtcttgtttgcgaagatgaacaagtcaaagctcattttggtttcgaaccaatttggatccgttctctccatgaaacctt |
253 |
Q |
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| T |
11730845 |
tagggaagacaaaacttgcacggcttgtttgcgaggatgagcaagtcaaagcaaattttgggctacaaccaatttggatcgatcttctacacgagacctt |
11730944 |
T |
|
| Q |
254 |
tgatgtggaat |
264 |
Q |
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| T |
11730945 |
tgatgtggaat |
11730955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 30 - 214
Target Start/End: Original strand, 11730274 - 11730461
Alignment:
| Q |
30 |
tttgagaaaattaccatggttggcagagaaaatgaaaagaaggagattatagatcaactactgaagttgaacaaccctgctgatgatttc---gttcctg |
126 |
Q |
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||||||||| |||| ||||||| |||||| |||| ||||| ||||||||||||| |||||| |||| || ||| || |||||| ||| ||| || |
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| T |
11730274 |
tttgagaaagttactgtggttggaagagaatatgagaagaaagagattatagatcgactacttaagtggatcaaatctactgatgcttttcatgttggtg |
11730373 |
T |
|
| Q |
127 |
ttattgtcattgttggtgttcctggaattgggaaaacaaaacttgcaagtcttgtttgcgaagatgaacaagtcaaagctcattttgg |
214 |
Q |
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| T |
11730374 |
tttttgtcattgttggtgtttcaggaataggaaagacaaaacttgcacgtcttgtttgcaaggatgagcaagtcaaagcaaattttgg |
11730461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 135 - 233
Target Start/End: Original strand, 11859136 - 11859234
Alignment:
| Q |
135 |
attgttggtgttcctggaattgggaaaacaaaacttgcaagtcttgtttgcgaagatgaacaagtcaaagctcattttggtttcgaaccaatttggatc |
233 |
Q |
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||||||||||||||||||||||| |||||||||||||| |||| ||||| |||||||| |||||||||| || ||||||| || ||||||||||| |
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| T |
11859136 |
attgttggtgttcctggaattggcaaaacaaaacttgctcgtctcgtttgtgaagatgagcaagtcaaagggagttctggtttccaagcaatttggatc |
11859234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 125 - 233
Target Start/End: Original strand, 12037924 - 12038032
Alignment:
| Q |
125 |
tgttattgtcattgttggtgttcctggaattgggaaaacaaaacttgcaagtcttgtttgcgaagatgaacaagtcaaagctcattttggtttcgaacca |
224 |
Q |
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||||||||| ||||||||||||||||||||||| |||||||||||||| ||| ||||| || ||||| |||||| || ||||||| || ||||| |
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| T |
12037924 |
tgttattgttattgttggtgttcctggaattggcaaaacaaaacttgctcatctcgtttgtgaggatgagcaagtcgaaatgaattttgggttacaacca |
12038023 |
T |
|
| Q |
225 |
atttggatc |
233 |
Q |
| |
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| T |
12038024 |
atttggatc |
12038032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 135 - 228
Target Start/End: Original strand, 11826968 - 11827061
Alignment:
| Q |
135 |
attgttggtgttcctggaattgggaaaacaaaacttgcaagtcttgtttgcgaagatgaacaagtcaaagctcattttggtttcgaaccaattt |
228 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||| ||| ||||| || || || ||||||||||| |||||| ||||||| ||||| |
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| T |
11826968 |
attgttggtgttactggaattgggaaaacaaaacttgctcatctcgtttgtgaggacgagcaagtcaaagcgaattttgaattcgaacaaattt |
11827061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 103
Target Start/End: Original strand, 11859049 - 11859104
Alignment:
| Q |
48 |
gttggcagagaaaatgaaaagaaggagattatagatcaactactgaagttgaacaa |
103 |
Q |
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||||||||||||| || |||||||||||||||||| |||| |||||| ||||||| |
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| T |
11859049 |
gttggcagagaaagagagaagaaggagattatagataaactgctgaagatgaacaa |
11859104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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