View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4435_low_1 (Length: 565)
Name: NF4435_low_1
Description: NF4435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4435_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 509; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 19 - 546
Target Start/End: Complemental strand, 30276066 - 30275541
Alignment:
| Q |
19 |
gtcctctgccataaaggctgcgaagtttgcagtcatgtattgttctttgttagaagatcagaaattaatgctgctgccatacttggtaaatcaactcttt |
118 |
Q |
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| T |
30276066 |
gtcctctgccataaaggctgcgaagtttgcagtcatgtattgttctttgttagaagatcagaaattaatgctgctgccatacttggtaaatcaactcttt |
30275967 |
T |
|
| Q |
119 |
ccttgcattgaagaggttttgaatacacacataaaccactttaagaaagtgattcctatattctcaataagtgattcttggattttagagaaataccttg |
218 |
Q |
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| T |
30275966 |
ccttgcattgaagaggttttgaatacacacataaaccactttaagaaagtgattcctatattctcaataagtgattcttggattttagagaaataccttg |
30275867 |
T |
|
| Q |
219 |
tgtctggagtgtttggcggagctgggtcttcaaccgaacaacctgattattgtctgctaacttctagtggccggaaggttctgacactattacaggtgtg |
318 |
Q |
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| T |
30275866 |
tgtctggagtgtttggcggagctgggtcttcaaccgaacaacctgattattgtctgctaacttctagtggccggaaggttctgacactattacaggtgtg |
30275767 |
T |
|
| Q |
319 |
ttcataattaccatacattattaaacattactgatgtgttttgattttctgtttagctttataaaagaagcatttaacagttgatacaccacatttatgt |
418 |
Q |
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| T |
30275766 |
ttc--aattaccatacattattaaacattactgatgtgttttgattttctgtttagctttataaaagaagcatttaacagttgatacaccacatttatgt |
30275669 |
T |
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| Q |
419 |
tggtctaatctctaatgtgatactataatttaatgttgaacgtcgtttctacttaataactaaacacagcagattgtaaattgtaacgaacataaattat |
518 |
Q |
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| T |
30275668 |
tggtctaatctctattgtgatactataatttaatgttgaacgtcgtttctacttaataactaaacacagcagattgtaaattgtaacgaacataaattat |
30275569 |
T |
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| Q |
519 |
ttttaagaacttatcctcttgagttgca |
546 |
Q |
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| T |
30275568 |
ttttaagaacttatcctcttgcgttgca |
30275541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 43 - 546
Target Start/End: Complemental strand, 7779350 - 7778852
Alignment:
| Q |
43 |
gtttgcagtcatgtattgttctttgttagaagatcagaaattaatgctgctgccatacttggtaaatcaactctttccttgcattgaagaggttttgaat |
142 |
Q |
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| T |
7779350 |
gtttgcagtcatggattgttct--gttagaagatcagaaattaatgctgctaccatacttggtaaagcatctctttccttgcattgaagag-ttttgaat |
7779254 |
T |
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| Q |
143 |
acacacataaaccactttaagaaagtgattcctatattctcaataagtgattcttggattttagagaaataccttgtgtctggagtgtttggcggagctg |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7779253 |
acacacataaaccactttaagaaagtgattcctatattctcagtaagtgattcttggattttagagaaataccttgtgtctggagtgtttggcggagctg |
7779154 |
T |
|
| Q |
243 |
ggtcttcaaccgaacaacctgattattgtctgctaacttctagtggccggaaggttctgacactattacaggtgtgttcataattaccatacattattaa |
342 |
Q |
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| T |
7779153 |
gatcttcaaaagaacaacctgattattgtctgctaacttctagtggccagaacgttctgacactattacaggtgtgttca--attaccatatattattaa |
7779056 |
T |
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| Q |
343 |
acattactgatgtgttttgattttctgtttagctttataaaagaagcatttaacagttgatacaccacatttatgttggtctaatctctaatgtgatact |
442 |
Q |
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| T |
7779055 |
acattactgatgtgttttgattttctgtttagctttatcaaagaagcatttaacagttgatacaccgcatttatgtcggtctaatctctaatctgatact |
7778956 |
T |
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| Q |
443 |
ataatttaatgttgaacgtcgtttctacttaataactaaacacagcagattgtaaattgtaacgaacataaattatttttaagaacttatcctcttgagt |
542 |
Q |
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|||| |||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||| |||||| || |
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| T |
7778955 |
ataacttaatgttgaacgttgtttctacttaacaactaaacacaacagattgtaaattgtaactaacataaattatttttaagaccttatactcttgcgt |
7778856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 351 - 407
Target Start/End: Original strand, 28843245 - 28843301
Alignment:
| Q |
351 |
gatgtgttttgattttctgtttagctttataaaagaagcatttaacagttgatacac |
407 |
Q |
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|||||||||| || || ||||||| ||||||||||| | | |||||||||||||||| |
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| T |
28843245 |
gatgtgttttaatattatgtttagatttataaaagaggtacttaacagttgatacac |
28843301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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