View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4435_low_4 (Length: 343)
Name: NF4435_low_4
Description: NF4435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4435_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-163; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 10 - 327
Target Start/End: Complemental strand, 37960556 - 37960239
Alignment:
| Q |
10 |
ttatactgtggctgtaaagagagatgagttaattggaaaaaatgggattgtttcggcttcaattggtattgaaaagaagataagacattttaagagtcat |
109 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
37960556 |
ttataccgtggctgtaaagagagatgagttaattggaaaaaatgggattgtttcggcttcaattggtatcgaaaagaagataagacatttaaagagtcat |
37960457 |
T |
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| Q |
110 |
gctttgttaggagctgaaacattgatgtctgattatagggaaatgtcaaaacctggtaagtctttaactgtggttgctggttcaccgaaattggctgttt |
209 |
Q |
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| T |
37960456 |
gctttgttaggagctgaaacattgatgtctgattatagggaaatgtcaaaacctggtaagtctgtaactgtggttgctggttcaccgaaattggctgttt |
37960357 |
T |
|
| Q |
210 |
atgatacagattttgggtgggggaagcctaagaaatctgatgcagttcatcttgattcgtccggttcgatttctctttctgattgtagagatggcggagg |
309 |
Q |
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| T |
37960356 |
atgagacagattttgggtgggggaagcctaagaaatctgatgctgttcatcttgattcgtccggttcgatttctctttctgattgtagagacggcggagg |
37960257 |
T |
|
| Q |
310 |
tggaattgaagttggttt |
327 |
Q |
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| T |
37960256 |
tggaattgaagttggttt |
37960239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 144 - 327
Target Start/End: Complemental strand, 37954613 - 37954430
Alignment:
| Q |
144 |
atagggaaatgtcaaaacctggtaagtctttaactgtggttgctggttcaccgaaattggctgtttatgatacagattttgggtgggggaagcctaagaa |
243 |
Q |
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||||||||||||||||||||||||||||| | | |||| |||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
37954613 |
atagggaaatgtcaaaacctggtaagtctgttaatgtgattgctggttcaccgaatttggctgtttatgagacagattttggatgggggaagcctaagaa |
37954514 |
T |
|
| Q |
244 |
atctgatgcagttcatcttgattcgtccggttcgatttctctttctgattgtagagatggcggaggtggaattgaagttggttt |
327 |
Q |
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| T |
37954513 |
atctgatgcagttcatcttgattcatccggttcgatttctctttctgattgtagaggtggtggaggtggaattaaggttggttt |
37954430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 76 - 303
Target Start/End: Original strand, 37907552 - 37907779
Alignment:
| Q |
76 |
tattgaaaagaagataagacattttaagagtcatgctttgttaggagctgaaacattgatgtctgattatagggaaatgtcaaaacctggtaagtcttta |
175 |
Q |
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|||| |||||||||||||| ||||||||||| |||||||||||| ||||||||| ||||| ||||||||| |||| | | |||||||||||| || || |
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| T |
37907552 |
tatttaaaagaagataagagattttaagagtgatgctttgttagaagctgaaacgttgatacctgattatatggaattattaaaacctggtaactcattt |
37907651 |
T |
|
| Q |
176 |
actgtggttgctggttcaccgaaattggctgtttatgatacagattttgggtgggggaagcctaagaaatctgatgcagttcatcttgattcgtccggtt |
275 |
Q |
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| T |
37907652 |
gtagtggttgctgggtcacctaaacttgatgtttgtgagactgattttgggtggggaaaaccaaagaaatctgatgcagtgcatattgattcgttccgtt |
37907751 |
T |
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| Q |
276 |
cgatttctctttctgattgtagagatgg |
303 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
37907752 |
cgatttctctttctgattgtagagatgg |
37907779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 10 - 327
Target Start/End: Original strand, 37915639 - 37915956
Alignment:
| Q |
10 |
ttatactgtggctgtaaagagagatgagttaattggaaaaaatgggattgtttcggcttcaattggtattgaaaagaagataagacattttaagagtcat |
109 |
Q |
| |
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||||||||| | |||||| || | ||||||| |||||||| |||| ||| || ||| ||| || ||||||| |||||||||| |||| |||||| || |
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| T |
37915639 |
ttatactgtagttgtaaataggggtgagttagttggaaaagatggtattcttgtggcggcaaatgctattgaacggaagataagagatttcaagagtgat |
37915738 |
T |
|
| Q |
110 |
gctttgttaggagctgaaacattgatgtctgattatagggaaatgtcaaaacctggtaagtctttaactgtggttgctggttcaccgaaattggctgttt |
209 |
Q |
| |
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|| ||||| |||| |||||| |||||| |||||||||||||||| |||||| ||||| ||| | | ||||| |||| || || ||| | | ||||| |
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| T |
37915739 |
gccttgttgggagttgaaacgttgatgcctgattatagggaaataataaaaccaggtaactctgttaaaatggtttctgggtcgcctaaacttgatgttt |
37915838 |
T |
|
| Q |
210 |
atgatacagattttgggtgggggaagcctaagaaatctgatgcagttcatcttgattcgtccggttcgatttctctttctgattgtagagatggcggagg |
309 |
Q |
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|||| || |||||||||||||| || || |||||||| |||| ||| ||| ||||||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
37915839 |
atgagactgattttgggtggggaaaaccaaagaaatccgatgtagtgcatattgattcgtccagttcgatttctctttctgattgtagagatggtcgagg |
37915938 |
T |
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| Q |
310 |
tggaattgaagttggttt |
327 |
Q |
| |
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||||||||| |||||||| |
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| T |
37915939 |
tggaattgaggttggttt |
37915956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 16 - 327
Target Start/End: Original strand, 3783787 - 3784107
Alignment:
| Q |
16 |
tgtggctgtaaagagagatgagttaattggaaaaaatgggattgtttcggcttcaattggtattgaaaagaagataagacattttaagagtcat---gct |
112 |
Q |
| |
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||||| ||||||||| | ||||||| |||||| ||||||||||||| ||||| ||| |||||| |||| |||||||||| |||| |||||| || ||| |
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| T |
3783787 |
tgtggttgtaaagagggctgagttagttggaacaaatgggattgttgcggctgcaaatggtatcgaaaggaagataagagatttcaagagtgataatgct |
3783886 |
T |
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| Q |
113 |
ttgttaggagctgaaacattgatgtctgattatagggaaatgtcaaaacctggtaagtctttaactgtggttgctggttcaccgaaattggctgtttatg |
212 |
Q |
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|||||||| || || | || |||||| |||| ||| | |||||||||||||||||| | | ||||||| ||||| ||||| | |||||||| |
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| T |
3783887 |
ttgttaggtcctaaatggtggacttctgatcatagtgaattatcaaaacctggtaagtctgttgtaggaattgctggctcacctaaatttgatgtttatg |
3783986 |
T |
|
| Q |
213 |
atacagattttgggtgggggaagcctaagaaatctgatgcagttcatcttgattcgtccggttcg------atttctctttctgattgtagagatggcgg |
306 |
Q |
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| || || || ||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| || |
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| T |
3783987 |
agactgacttcgggtgggggaagcctaaaaaatctgatgcagttcatcttgattcgtcgtcttcgatttctatttctctttctgattgtagagatggtgg |
3784086 |
T |
|
| Q |
307 |
aggtggaattgaagttggttt |
327 |
Q |
| |
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|||||||||| | |||||||| |
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| T |
3784087 |
aggtggaattcaggttggttt |
3784107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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