View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4435_low_5 (Length: 313)
Name: NF4435_low_5
Description: NF4435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4435_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 295
Target Start/End: Complemental strand, 31699971 - 31699694
Alignment:
| Q |
18 |
tagctttggcattggcttcattaaattcttgaagaaactgaacaactgtttgagctaaattgacagggtcagtaacggacccgttgaagacagcttggtt |
117 |
Q |
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| T |
31699971 |
tagctttggcattggcttcattaaattcttgaagaaactgaacagctgtttgagctaagttgacagggtcaataacggacccgttgaagacagcttggtt |
31699872 |
T |
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| Q |
118 |
tcttgcgaaccaaatcttccaaaggatagtgcaaaacagttgtgaaccttccttatcagcgcaagacaaccattctaacaaccagcaattcagagcaaca |
217 |
Q |
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| T |
31699871 |
tcttgcggaccaaatcttccaaaggatagtgcagaacagttgtgaaccttccttatcagcgcaagacaaccattctaacaaccagcaattcagagcaaca |
31699772 |
T |
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| Q |
218 |
ttaataggagtatgggagcccaaaggcgaagcaaacaatgccagtttggatatattgcaattcatgaacaaatgttcc |
295 |
Q |
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| T |
31699771 |
ttaaaaggagtatgggagcccaaaggcgaagcaaacaatgccagtttggatatattgcaattcatgaacaaatgttcc |
31699694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 171
Target Start/End: Original strand, 29782849 - 29782919
Alignment:
| Q |
101 |
ttgaagacagcttggtttcttgcgaaccaaatcttccaaaggatagtgcaaaacagttgtgaaccttcctt |
171 |
Q |
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| T |
29782849 |
ttgaagacagcctggtttctagcataccacaacttccaaagaatggtacaaaacagttgtgacccttcctt |
29782919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 8e-24; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 47 - 299
Target Start/End: Original strand, 10073858 - 10074110
Alignment:
| Q |
47 |
tgaagaaactgaacaactgtttgagctaaattgacagggtcagtaacggacccgttgaagacagcttggtttcttgcgaaccaaatcttccaaaggatag |
146 |
Q |
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| T |
10073858 |
tgaataaactgaatagctgtgtgagctaaattaacagggtctgtagtggccccattaaaaacagcttgatttctagcgtaccaaagcttccagaggatag |
10073957 |
T |
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| Q |
147 |
tgcaaaacagttgtgaaccttccttatcagcgcaagacaaccattctaacaaccagcaattcagagcaacattaataggagtatgggagcccaaaggcga |
246 |
Q |
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| T |
10073958 |
tgcagaacagctgcgagtcatccttaacagcacaagatagccaatctaacaaatagctatgcaggtccatattaaagggagcatgggaacgcaaaggcga |
10074057 |
T |
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| Q |
247 |
agcaaacaatgccagtttggatatattgcaattcatgaacaaatgttccacag |
299 |
Q |
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| T |
10074058 |
tgcaaacagtgctagtttggacaaattacagttcatgaataaatgttccacag |
10074110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 47 - 267
Target Start/End: Original strand, 10135909 - 10136129
Alignment:
| Q |
47 |
tgaagaaactgaacaactgtttgagctaaattgacagggtcagtaacggacccgttgaagacagcttggtttcttgcgaaccaaatcttccaaaggatag |
146 |
Q |
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| T |
10135909 |
tgaataaactgaacagttgtgtgagcaaaattaacggggtctgtatcggccccattaaaaacagcttgatttctagcgtaccaaagcttctagaggatag |
10136008 |
T |
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| Q |
147 |
tgcaaaacagttgtgaaccttccttatcagcgcaagacaaccattctaacaaccagcaattcagagcaacattaataggagtatgggagcccaaaggcga |
246 |
Q |
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| T |
10136009 |
tgcagaacagctgcgagccatccttatcagcacaagatagccaatctaacaactagctatgcaggtccatattaaagggagcatggcaacccaaaggcga |
10136108 |
T |
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| Q |
247 |
agcaaacaatgccagtttgga |
267 |
Q |
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| T |
10136109 |
tgcaaacatagctagtttgga |
10136129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 299
Target Start/End: Complemental strand, 10356753 - 10356500
Alignment:
| Q |
47 |
tgaagaaactgaacaactgtttgagctaaattgacagggtcagtaacggacccgttgaagacagcttggtttcttgcgaaccaaatcttccaaaggatag |
146 |
Q |
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|||| |||||||||| || | ||||||||||| || ||||| ||| || ||| | || |||||||| ||||| || |||||| | |||| ||||||| |
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| T |
10356753 |
tgaataaactgaacagctctgtgagctaaattaacggggtctgtagtggccccactaaaaacagcttgatttctagcataccaaagcatccagaggatag |
10356654 |
T |
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| Q |
147 |
tgcaaaacagttgtgaaccttccttatcagcgcaagacaaccattctaacaaccagcaattcagagcaacattaataggagtatgggagcccaaaggcga |
246 |
Q |
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| T |
10356653 |
tgcagaacagctgcgagtcatccttaacagcacaagatagccaatctaacaactagctatgcaggtccatattaaagggagcatgggaacccaaaggcga |
10356554 |
T |
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| Q |
247 |
agcaaacaatgccagtttggatatattgcaattcat-gaacaaatgttccacag |
299 |
Q |
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| T |
10356553 |
tgcaaacatagctagtttggacaaattacagttcatcaaataaatgttccacag |
10356500 |
T |
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