View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4435_low_8 (Length: 237)
Name: NF4435_low_8
Description: NF4435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4435_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 102; Significance: 9e-51; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 3016185 - 3016286
Alignment:
| Q |
1 |
atacttacgacacatttttaatgacacgatgttgaataagtgtcaaagaatttgtatctataacatagttataaacaaaaaattatacaaatttgagtat |
100 |
Q |
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| T |
3016185 |
atacttacgacacatttttaatgacacgatgttgaataagtgtcaaagaatttgtatctataacatagttataaacaaaaaattatacaaatttgagtat |
3016284 |
T |
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| Q |
101 |
at |
102 |
Q |
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|| |
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| T |
3016285 |
at |
3016286 |
T |
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Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 194 - 237
Target Start/End: Original strand, 3016388 - 3016431
Alignment:
| Q |
194 |
ttcgtaaatgtttacgcaattgaacctaatttacttcacatttc |
237 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3016388 |
ttcgtaaatgtttacgcaattgaacctaatttacttcacatttc |
3016431 |
T |
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