View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4436-Insertion-1 (Length: 1075)
Name: NF4436-Insertion-1
Description: NF4436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4436-Insertion-1 |
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| [»] scaffold0031 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 617; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 617; E-Value: 0
Query Start/End: Original strand, 7 - 707
Target Start/End: Original strand, 254819 - 255532
Alignment:
| Q |
7 |
agtaaccacgccaattgaccttattaaaatccacaacaaaccatcggcttagtctgattttgggaacagaaagaacaaagatagcaagaaagggtaaaag |
106 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
254819 |
agtaaccacgccaattgaccttattaaaatcgacaacaaaccatcggcttagtctgattttgggaacagaaagaacaaagatagcaagaaagggtaaaag |
254918 |
T |
|
| Q |
107 |
tgaaaaaatggttaaaacaacagcagagaaaccaacgatgtgaagacctctgtaattcaaataagtaagcgaaaaagtgatccctaagagagcaggaatt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
254919 |
tgaaaaaatggttaaaacaacagcagagaaaccaacaatgtgaagacctctgtaattcaaataagtaagagaaaaagtgatccctaagagagcaggaatt |
255018 |
T |
|
| Q |
207 |
cgggctaacatacgattaaaaataggaaaagaatgtttcaagtaatcaagaaacaaaacaggataaagagcgttgtccataacaccactaaaccatttcc |
306 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
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| T |
255019 |
cgggctaacataagattaaaaataggaaaagaatgtttcaagtaatcaagaaacaaaacaggataaagagcattgtccataacaccactgaaccatttcc |
255118 |
T |
|
| Q |
307 |
aaaaaccttgttgaaaaccccaaaagggaccaaaagaagaggatatccaaagaacatagccaccgttgtgagggaaaatagtggcaagttcagcggtgac |
406 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
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| T |
255119 |
aaaaaccttgttgaaaaccccaaaagggaccaaaagaagaggatatccaaagaacatagccaccgttgtgagggaaagcagtggcaagttcggcggtgac |
255218 |
T |
|
| Q |
407 |
gagagcttcagggacgctccaaatgagagggaaaaagaagaaaccgagtaaggatagaagaggaccaccgccggttctaacagaatcctcaactccgaat |
506 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
255219 |
gagagcttcagggacgctccaaatgagagggaaaaggaagaaaccgagtaaggatagaagaggaccaccgccggtactaacagaatcctcaactccgaat |
255318 |
T |
|
| Q |
507 |
ggaccgccggagacttcgtagaagattagagcaataagaggtaataaggttagttttggatttgatttggcatcatccatcaatagaataaaggtaccaa |
606 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
255319 |
ggaccgccggagacttcgtagaagattagagcaataagaggtaataaggttagttttggatttgatttggcatcatccatcaatagaataaaggtaccaa |
255418 |
T |
|
| Q |
607 |
ttcggatgagattaac------------aatatttttattcagatctgttcacagcacaaccttcatgttgcttaacttcttgaatcaa-taataaatca |
693 |
Q |
| |
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|||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
255419 |
ttcggacgagattaacttcttgcttgttaatatttttattcagatctgttcacagcacaaccttcatgttgcttaacttcttgaatcaattaataaatca |
255518 |
T |
|
| Q |
694 |
attttttcattact |
707 |
Q |
| |
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|||||||||||||| |
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| T |
255519 |
attttttcattact |
255532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 152; E-Value: 6e-80
Query Start/End: Original strand, 746 - 953
Target Start/End: Original strand, 255558 - 255765
Alignment:
| Q |
746 |
aatctttcacacccgtcgaccttaacaaaatgccgtcgcccttttccctctctcatacattcacaacattagtggtgtttgatcttgatccgatggctta |
845 |
Q |
| |
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||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
255558 |
aatctttcacacccgtcaaccttaacaaaatgctgttgcccttttccctctctcatacattcacaacattattggtgtttgatcttgatccgatggctta |
255657 |
T |
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| Q |
846 |
gaaaaagctgctttaattgtaaatttattatttcaaaaataccgagtttaaattataactgctctttatctgtggtcaattagtttgaacaatatatttc |
945 |
Q |
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|||||||||| |||||||||||||||||||||| |||||||| || ||||||||| |||||||||| |||||| ||||||||||||| | ||| |||||| |
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| T |
255658 |
gaaaaagctgttttaattgtaaatttattattttaaaaatactgattttaaattagaactgctcttcatctgtagtcaattagtttggataatgtatttc |
255757 |
T |
|
| Q |
946 |
aatatgta |
953 |
Q |
| |
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|||||||| |
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| T |
255758 |
aatatgta |
255765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 9e-39; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 9e-39
Query Start/End: Original strand, 7 - 201
Target Start/End: Original strand, 21244078 - 21244270
Alignment:
| Q |
7 |
agtaaccacgccaattgaccttattaaaatccacaacaaaccatcggcttagtctgattttgggaacagaaagaacaaagatagcaagaaagggtaaaag |
106 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||||||||| ||| |||||||||| |||| |||| ||| |||| ||||||| ||| |||| |
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| T |
21244078 |
agtaaccacgccaattcaccttcttaaaatccacaacaaaccatcgtcttggtctgattttcggaa-agaa-gaatcgcgataacaagaaacggtgaaag |
21244175 |
T |
|
| Q |
107 |
tgaaaaaatggttaaaacaacagcagagaaaccaacgatgtgaagacctctgtaattcaaataagtaagcgaaaaagtgatccctaagagagcag |
201 |
Q |
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|||||| ||| ||||| |||||||||||||||||| || ||||||| | | |||||||| |||||||||||||| ||||||||||| ||||||| |
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| T |
21244176 |
ggaaaaagtggctaaaagaacagcagagaaaccaacaatatgaagacgtatataattcaagtaagtaagcgaaaatgtgatccctaaaagagcag |
21244270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 233 - 298
Target Start/End: Original strand, 21244275 - 21244340
Alignment:
| Q |
233 |
aaaagaatgtttcaagtaatcaagaaacaaaacaggataaagagcgttgtccataacaccactaaa |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
21244275 |
aaaagaatgtttcaagtaatcaagaaacaaaacaggataaagagcattgtccataacaccactaaa |
21244340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 444 - 522
Target Start/End: Original strand, 21244366 - 21244444
Alignment:
| Q |
444 |
aagaaaccgagtaaggatagaagaggaccaccgccggttctaacagaatcctcaactccgaatggaccgccggagactt |
522 |
Q |
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||||| |||||||||||||||||||||||||| |||| |||| ||||||| ||||||||||| |||| ||||||||| |
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| T |
21244366 |
aagaagccgagtaaggatagaagaggaccaccaccggctctatcagaatcttcaactccgaagagaccatcggagactt |
21244444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 249 - 329
Target Start/End: Original strand, 42604 - 42684
Alignment:
| Q |
249 |
taatcaagaaacaaaacaggataaagagcgttgtccataacaccactaaaccatttccaaaaaccttgttgaaaaccccaa |
329 |
Q |
| |
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||||||||||||||||| ||||| | ||| ||||| || |||||||||| ||||||| |||||||||| ||||||||| |
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| T |
42604 |
taatcaagaaacaaaactggatacaaagcattgtctatgacaccactaatccatttcatccaaccttgttggaaaccccaa |
42684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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