View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4436-Insertion-12 (Length: 614)

Name: NF4436-Insertion-12
Description: NF4436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4436-Insertion-12
NF4436-Insertion-12
[»] chr8 (1 HSPs)
chr8 (8-614)||(34205122-34205728)


Alignment Details
Target: chr8 (Bit Score: 540; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 8 - 614
Target Start/End: Original strand, 34205122 - 34205728
Alignment:
Q  8 ttcttgcctttacctttctcacgagcatcctttgtagtttcttaaagatgaaggattaatttgtagtttctttaatatgaagggtatgtcatatctttat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34205122 ttcttgcctttacctttctcacgagcatcctttgtagtttcttaaagatgaaggattaatttgtagtttctttaatatgaagggtatgtcatatctttat 34205221  T
Q  108 ctttacaaatagagtcataattttcatcactctctttttaaaattgagtccttcccttgatatgattcttcttgagcaattttcaatggattccaaaatt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  34205222 ctttacaaatagagtcataattttcatcactctctttttaaaattgagtccttcccttgatatgattcttcatgagcaattttcaatggattccaaaatt 34205321  T
Q  208 cttgacttgaggagcatcctgctaccttttcaagttattaatgatggatttaaatataattgtagcaataatagatacaaattatagcatatttgtgtaa 307  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  34205322 cttgagttgaggagcatcctgctactttttcaagttattaatgatggatttaaatataattgtagcaataatagatacaaattatagcatatttgtataa 34205421  T
Q  308 aagatagataagaattgtgtacctatagatttatgagagcagatgatagtgagatgatt-aacattggtagagaatgagagtctaccaccctcttaattt 406  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||    
T  34205422 aagatagataagaattgtgtacctatagatttatgagagaagatgatagtgagatgattaaacattggtagagaatgagagtctacta-cctcttaattt 34205520  T
Q  407 gtcgtctattttttgggttaggttaacgataataacatattacaacccaccacgttccattaaaaaacaaaattcaacgcatactcattagctaattagt 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||| |||| | |||||||||    
T  34205521 gtcgtctattttttgggttaggttaacgataataacatattacaacccatcacgttccattaaaaaacaaaaatcaacacatattcatgaactaattagt 34205620  T
Q  507 acttttataatatttgatcagaatttacattaataataattcataataatctattattgtcaatgcataaaattgcctttgagttccatagtactttttt 606  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  34205621 acttttataatatttgatcagaatttacattaataataattcataataatttattattgtcaatgcataaaattgcctttgagttccatagtactttttt 34205720  T
Q  607 gtttctcc 614  Q
    ||||||||    
T  34205721 gtttctcc 34205728  T

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