View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4436-Insertion-13 (Length: 596)
Name: NF4436-Insertion-13
Description: NF4436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4436-Insertion-13 |
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Alignment Details
Target: chr4 (Bit Score: 502; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 7 - 586
Target Start/End: Complemental strand, 48259115 - 48258540
Alignment:
| Q |
7 |
ataaccgtccctgctatgggtttttcccaaaacccttgttcgatatgtttgttatatggctctcctagtatgattttcaggggtttgtattgattttatc |
106 |
Q |
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| T |
48259115 |
ataaccgtccctgctatgggtttttcccaaaaccctcgtttgatatgtttgttatatggctctcctagtatgattttcaggggtttgtattgattttatc |
48259016 |
T |
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| Q |
107 |
acattgtatgtactaaaaaatggtgttcttcttgnnnnnnnnagtatctaaaatagtaatgtctttactttaaaaaatcaggttgtacctcgcaaaccat |
206 |
Q |
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| T |
48259015 |
acattgtatgtactaaaaaatggtgttcttcttgttttttatagtatctaaaatagtaatgtctttactttaaaaaatcaggctgtacctcgcaaaccat |
48258916 |
T |
|
| Q |
207 |
atattatacatattggcgacgttgtgtatttaatggcctcatcatccaaactgccaataatctgtctcagctagtgtatgaaatcacacataatgatatt |
306 |
Q |
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||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
48258915 |
atattatacat--tagcgacgttgtgtatttaatggcctcatcattcaaactgccaataatctgtctcggctagtgtatgaaatcacacataatgatatt |
48258818 |
T |
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| Q |
307 |
taggaattgaataccaaaggtagatccaaaccaagccttcataccaaaatcaccttccatgtaaagatagttcacaatttccactttattggcacatcta |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48258817 |
taggaattgaataccaaaggtagatccaaaccaagccttcataccaaaatcaccttccatgtaaagatagttcacaatttccactttattggcacatcta |
48258718 |
T |
|
| Q |
407 |
gggcataaaacgtctccggccaagcctttatgatttaactcactcatgacatgcatagagtcgttaagaatgtgtcataggaaatctttgtgcttaggta |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
48258717 |
gggcataaaacgtctccggccaagcctttatgatttaactcactcatgacatgcatagagtctttaagaatgtgtcatgggaaatctttgtgcttaggta |
48258618 |
T |
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| Q |
507 |
tagtgtggagattccataatttcttccaaatctttttgtcacctctatgatgccactcttcgatgctttatagccagttt |
586 |
Q |
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| T |
48258617 |
tagtgtggagattccataatttcttccaaatctttttgtcacctctatgatg--actcttcgatgctttatagccagttt |
48258540 |
T |
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