View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4436-Insertion-15 (Length: 447)
Name: NF4436-Insertion-15
Description: NF4436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4436-Insertion-15 |
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Alignment Details
Target: chr7 (Bit Score: 393; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 7 - 446
Target Start/End: Original strand, 45662917 - 45663354
Alignment:
| Q |
7 |
aattttagtcagtaaaacgcattaaaatcttcttttcaatgggttttctccgtcaattgtcttcagattatagggggcttttccagcaaaaatggggggc |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45662917 |
aattttagtcagtaaaacgcattaaaatcttcttttcaatgggttttctccgtcaattgtcttcagattatagggggcttttccagcaaaaatggggggc |
45663016 |
T |
|
| Q |
107 |
taatagagtaataccagaaaacgtacacaattcaaataaatcaatcaatggatagaaaacactgtttatgactgtttaggatgggccggcccaacatttt |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
45663017 |
taatagagtaataccagaaaacgtacacaattcaaataaatcaatcaatggatagaaaacactgtttatgactgtttaggatgggccggccgaacatttt |
45663116 |
T |
|
| Q |
207 |
caggctagtaaaagtttttggaagtttgctgtttacactgaagatttgctatcacacctgaaaatgatcgaaataacccaaacaacagttaatttccgtt |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
45663117 |
caggctagtaaaagtttttggaagtttgctgtttacactgaagatttgccatcacacctgaaaatgatcgaaataacccaaacaatagttaattgccgtt |
45663216 |
T |
|
| Q |
307 |
ttctccaaaagaaaaattaaacaacgagcgacagttaacggccgttgaaggtcattttcaattgtgtgatagcaatttttgaagtctaaagagcaatctt |
406 |
Q |
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||||||||||||||||||||| | |||| ||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
45663217 |
ttctccaaaagaaaaattaaaga--gagctacagttaactgccgttgaaggtcattttcaagtgtgtgatagcaatctttgaagtctaaagagcaatctt |
45663314 |
T |
|
| Q |
407 |
caagtttttgtttaggttttagaaaaactactactatata |
446 |
Q |
| |
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| T |
45663315 |
caagtttttgtttaggttttagaaaaactactactatata |
45663354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 398
Target Start/End: Complemental strand, 34845713 - 34845669
Alignment:
| Q |
354 |
aaggtcattttcaattgtgtgatagcaatttttgaagtctaaaga |
398 |
Q |
| |
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| T |
34845713 |
aaggtcattttcaaatgtgagatagtaatctttgaagtctaaaga |
34845669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 293 - 407
Target Start/End: Complemental strand, 50765701 - 50765578
Alignment:
| Q |
293 |
agttaatttccgttttctccaaaagaaaaattaaacaacgagcgacagttaacggccgttgaaggt---------cattttcaattgtgtgatagcaatt |
383 |
Q |
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|||||||| ||||| ||||||||||||||||||||| ||| || ||||||| || |||| |||| ||||||||| |||||||||||||| |
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| T |
50765701 |
agttaattgtcgtttgctccaaaagaaaaattaaacagcgaatgatagttaactgctgttggaggtattaaaaatcattttcaagtgtgtgatagcaatc |
50765602 |
T |
|
| Q |
384 |
tttgaagtctaaagagcaatcttc |
407 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
50765601 |
tttgaagtctaaagagcaatcttc |
50765578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 310 - 408
Target Start/End: Original strand, 14133802 - 14133909
Alignment:
| Q |
310 |
tccaaaagaaaaattaaacaacgagcgacagttaacggccgttgaaggt---------cattttcaattgtgtgatagcaatttttgaagtctaaagagc |
400 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||||| |||| |||||||| |||||||||||||| ||||||||||||||||| |
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| T |
14133802 |
tccaaaagaaaaattaaacaacgaacgacagttaagtgccgttagaggtattaaaagtcattttcagctgtgtgatagcaatctttgaagtctaaagagc |
14133901 |
T |
|
| Q |
401 |
aatcttca |
408 |
Q |
| |
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|||||||| |
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|
| T |
14133902 |
aatcttca |
14133909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 351 - 407
Target Start/End: Original strand, 50549035 - 50549091
Alignment:
| Q |
351 |
ttgaaggtcattttcaattgtgtgatagcaatttttgaagtctaaagagcaatcttc |
407 |
Q |
| |
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||||||||||||| || | |||||||||||| ||||||||||||| |||||||||| |
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|
| T |
50549035 |
ttgaaggtcatttgcaggtctgtgatagcaatctttgaagtctaaaaagcaatcttc |
50549091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 403
Target Start/End: Complemental strand, 5672702 - 5672650
Alignment:
| Q |
351 |
ttgaaggtcattttcaattgtgtgatagcaatttttgaagtctaaagagcaat |
403 |
Q |
| |
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||||||||||||| ||| ||| ||||| |||| ||| |||||||||||||||| |
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| T |
5672702 |
ttgaaggtcatttccaagtgtctgataacaatctttaaagtctaaagagcaat |
5672650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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