View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4436-Insertion-17 (Length: 169)
Name: NF4436-Insertion-17
Description: NF4436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4436-Insertion-17 |
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| [»] chr5 (6 HSPs) |
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| [»] chr4 (8 HSPs) |
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| [»] scaffold0287 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 154; Significance: 6e-82; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 6e-82
Query Start/End: Original strand, 8 - 169
Target Start/End: Complemental strand, 9400432 - 9400271
Alignment:
| Q |
8 |
gctactgccaagggagccaatggaaatgtgcactataggtggttaccagattccagcaaagacaatagtgtatgtgaatgcttgggctattcatagagac |
107 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9400432 |
gctactgccaagggagtcaatggaaatgtgcactataggtggttaccagattccagcaaagacaatagtgtatgtgaatgcttgggctattcatagagac |
9400333 |
T |
|
| Q |
108 |
tctaatgtttggaaagatccggaagagttttatccagagagattcttagaaagttctataaa |
169 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9400332 |
tctaatgtttggaaagatccagaagagttttatccagagagattcttagaaagttctataaa |
9400271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 5e-36
Query Start/End: Original strand, 29 - 169
Target Start/End: Complemental strand, 20074173 - 20074033
Alignment:
| Q |
29 |
ggaaatgtgcactataggtggttaccagattccagcaaagacaatagtgtatgtgaatgcttgggctattcatagagactctaatgtttggaaagatccg |
128 |
Q |
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||||| ||||||||||||||| ||||| ||||| |||||| | |||||| ||||||||||||||||||||||| |||| |||||||||||||| |||| |
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| T |
20074173 |
ggaaaagtgcactataggtggctaccaaattccggcaaaggcggtagtgtttgtgaatgcttgggctattcatacagaccctaatgtttggaaaaatcca |
20074074 |
T |
|
| Q |
129 |
gaagagttttatccagagagattcttagaaagttctataaa |
169 |
Q |
| |
|
||||| |||||||| |||||||| ||||||||||| ||||| |
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|
| T |
20074073 |
gaagaattttatcctgagagatttttagaaagttcgataaa |
20074033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.0000000009
Query Start/End: Original strand, 57 - 161
Target Start/End: Complemental strand, 31039569 - 31039465
Alignment:
| Q |
57 |
attccagcaaagacaatagtgtatgtgaatgcttgggctattcatagagactctaatgtttggaaagatccggaagagttttatccagagagattcttag |
156 |
Q |
| |
|
||||||| |||||| | ||||| |||||||| | ||| || ||||||||| | | || ||||| ||||| |||||||||||||||||||||||| ||| |
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|
| T |
31039569 |
attccagacaagacattggtgtacgtgaatgcattggcgatccatagagacccagaagtatggaaggatccagaagagttttatccagagagattcatag |
31039470 |
T |
|
| Q |
157 |
aaagt |
161 |
Q |
| |
|
|||| |
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|
| T |
31039469 |
gaagt |
31039465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.0000000009
Query Start/End: Original strand, 57 - 161
Target Start/End: Complemental strand, 31053059 - 31052955
Alignment:
| Q |
57 |
attccagcaaagacaatagtgtatgtgaatgcttgggctattcatagagactctaatgtttggaaagatccggaagagttttatccagagagattcttag |
156 |
Q |
| |
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||||||| |||||| | ||||| |||||||| | ||| || ||||||||| | | || ||||| ||||| |||||||||||||||||||||||| ||| |
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|
| T |
31053059 |
attccagacaagacattggtgtacgtgaatgcattggcgatccatagagacccagaagtatggaaggatccagaagagttttatccagagagattcatag |
31052960 |
T |
|
| Q |
157 |
aaagt |
161 |
Q |
| |
|
|||| |
|
|
| T |
31052959 |
gaagt |
31052955 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 113
Target Start/End: Original strand, 5893927 - 5893959
Alignment:
| Q |
81 |
gtgaatgcttgggctattcatagagactctaat |
113 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |
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|
| T |
5893927 |
gtgaatgcttgggctattcatagagaccctaat |
5893959 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 117 - 152
Target Start/End: Complemental strand, 31071831 - 31071796
Alignment:
| Q |
117 |
tggaaagatccggaagagttttatccagagagattc |
152 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||| |
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|
| T |
31071831 |
tggaaggatccagaagagttttatccagagagattc |
31071796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 8e-41; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 8e-41
Query Start/End: Original strand, 29 - 169
Target Start/End: Complemental strand, 8929541 - 8929401
Alignment:
| Q |
29 |
ggaaatgtgcactataggtggttaccagattccagcaaagacaatagtgtatgtgaatgcttgggctattcatagagactctaatgtttggaaagatccg |
128 |
Q |
| |
|
||||| ||||| | ||||||| ||||| ||||| ||||| |||||||| ||||||||||||||| ||||||||||||||||| | |||||||||||||| |
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|
| T |
8929541 |
ggaaaagtgcattgtaggtggctaccatattcctgcaaaaacaatagtatatgtgaatgcttggtctattcatagagactctgaaatttggaaagatccg |
8929442 |
T |
|
| Q |
129 |
gaagagttttatccagagagattcttagaaagttctataaa |
169 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||||| |
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|
| T |
8929441 |
gaagagttttatcctgagagattcttagagagttctataaa |
8929401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 5e-39
Query Start/End: Original strand, 36 - 169
Target Start/End: Complemental strand, 9000295 - 9000162
Alignment:
| Q |
36 |
tgcactataggtggttaccagattccagcaaagacaatagtgtatgtgaatgcttgggctattcatagagactctaatgtttggaaagatccggaagagt |
135 |
Q |
| |
|
||||||||| |||| ||| | |||||||| ||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||| |||| ||||| | |
|
|
| T |
9000295 |
tgcactataagtggatacaatattccagccaagacaatattgtatgtgaatgcttgggctattcagagagaccctaatgtttggaaaaatccagaagaat |
9000196 |
T |
|
| Q |
136 |
tttatccagagagattcttagaaagttctataaa |
169 |
Q |
| |
|
||||||| || ||||||||||||||||||||||| |
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|
| T |
9000195 |
tttatcctgaaagattcttagaaagttctataaa |
9000162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 36 - 169
Target Start/End: Complemental strand, 8914612 - 8914479
Alignment:
| Q |
36 |
tgcactataggtggttaccagattccagcaaagacaatagtgtatgtgaatgcttgggctattcatagagactctaatgtttggaaagatccggaagagt |
135 |
Q |
| |
|
||||||||| ||| | ||| ||||| |||||| | ||||||| ||||||||||||||||||||||| |||||| |||||||||||| | || ||||| | |
|
|
| T |
8914612 |
tgcactataaatggcttccaaattcccgcaaaggcgatagtgtttgtgaatgcttgggctattcatacagactcaaatgtttggaaaaacccagaagaat |
8914513 |
T |
|
| Q |
136 |
tttatccagagagattcttagaaagttctataaa |
169 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||| |
|
|
| T |
8914512 |
tttatccagagagatttttagaaagttctttaaa |
8914479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 30 - 163
Target Start/End: Complemental strand, 8966391 - 8966258
Alignment:
| Q |
30 |
gaaatgtgcactataggtggttaccagattccagcaaagacaatagtgtatgtgaatgcttgggctattcatagagactctaatgtttggaaagatccgg |
129 |
Q |
| |
|
|||| ||||| |||| |||||||| |||||||||| || |||||||||||||||||||||||||||||||| |||||| | | | ||||||| |||| | |
|
|
| T |
8966391 |
gaaaagtgcattataagtggttacaagattccagccaacacaatagtgtatgtgaatgcttgggctattcaaagagacccaagtaattggaaaaatccag |
8966292 |
T |
|
| Q |
130 |
aagagttttatccagagagattcttagaaagttc |
163 |
Q |
| |
|
||||||||||||| ||||||||||| ||| |||| |
|
|
| T |
8966291 |
aagagttttatcccgagagattcttggaatgttc |
8966258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 29 - 169
Target Start/End: Complemental strand, 8900714 - 8900574
Alignment:
| Q |
29 |
ggaaatgtgcactataggtggttaccagattccagcaaagacaatagtgtatgtgaatgcttgggctattcatagagactctaatgtttggaaagatccg |
128 |
Q |
| |
|
||||| ||||| |||| |||| ||||| ||||| |||||| | || |||| ||||||||||||||||||||||| |||| | ||||||||||| | || |
|
|
| T |
8900714 |
ggaaaagtgcattataagtggctaccaaattcctgcaaaggcgattgtgtttgtgaatgcttgggctattcatacagacccagatgtttggaaaaaccca |
8900615 |
T |
|
| Q |
129 |
gaagagttttatccagagagattcttagaaagttctataaa |
169 |
Q |
| |
|
|||||||||||||| || ||||| ||||||||||||||||| |
|
|
| T |
8900614 |
gaagagttttatcctgaaagatttttagaaagttctataaa |
8900574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 36 - 169
Target Start/End: Original strand, 9030829 - 9030962
Alignment:
| Q |
36 |
tgcactataggtggttaccagattccagcaaagacaatagtgtatgtgaatgcttgggctattcatagagactctaatgtttggaaagatccggaagagt |
135 |
Q |
| |
|
||||||||| ||| ||| | |||||||| | ||||||| ||||||||||||||||||||||||| |||||| |||||||||| || | | ||||| | |
|
|
| T |
9030829 |
tgcactataaatggatacaatattccagccaggacaatattgtatgtgaatgcttgggctattcagagagaccataatgtttgggaaaacgcagaagaat |
9030928 |
T |
|
| Q |
136 |
tttatccagagagattcttagaaagttctataaa |
169 |
Q |
| |
|
||||||| || ||||||||||||||||||||||| |
|
|
| T |
9030929 |
tttatcctgaaagattcttagaaagttctataaa |
9030962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 57 - 169
Target Start/End: Original strand, 8955000 - 8955112
Alignment:
| Q |
57 |
attccagcaaagacaatagtgtatgtgaatgcttgggctattcatagagactctaatgtttggaaagatccggaagagttttatccagagagattcttag |
156 |
Q |
| |
|
||||| |||||||||||| | ||||| ||||||||||||||||| ||||| | || |||||| | | || ||||| |||||||| ||||||||||||| |
|
|
| T |
8955000 |
attcctgcaaagacaatattatatgtaaatgcttgggctattcagagagatccagatatttggataaacccagaagaattttatcctgagagattcttag |
8955099 |
T |
|
| Q |
157 |
aaagttctataaa |
169 |
Q |
| |
|
||||||||||||| |
|
|
| T |
8955100 |
aaagttctataaa |
8955112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 69 - 169
Target Start/End: Original strand, 8979348 - 8979448
Alignment:
| Q |
69 |
acaatagtgtatgtgaatgcttgggctattcatagagactctaatgtttggaaagatccggaagagttttatccagagagattcttagaaagttctataa |
168 |
Q |
| |
|
|||||| ||||||| || | ||||||||||| ||||| ||||| ||||||| |||| ||||| |||||||| ||||||||| ||||||||||||||| |
|
|
| T |
8979348 |
acaatattgtatgtaaacgtctgggctattcaaagagatcctaatacttggaaaaatccagaagaattttatcccgagagattcatagaaagttctataa |
8979447 |
T |
|
| Q |
169 |
a |
169 |
Q |
| |
|
| |
|
|
| T |
8979448 |
a |
8979448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0287 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: scaffold0287
Description:
Target: scaffold0287; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 155
Target Start/End: Original strand, 15856 - 15894
Alignment:
| Q |
117 |
tggaaagatccggaagagttttatccagagagattctta |
155 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
15856 |
tggaaagatcccgacgagttttatccagagagattctta |
15894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 155
Target Start/End: Complemental strand, 3630229 - 3630191
Alignment:
| Q |
117 |
tggaaagatccggaagagttttatccagagagattctta |
155 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
3630229 |
tggaaagatcccgacgagttttatccagagagattctta |
3630191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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