View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4436-Insertion-18 (Length: 104)
Name: NF4436-Insertion-18
Description: NF4436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4436-Insertion-18 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 97; Significance: 3e-48; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 3e-48
Query Start/End: Original strand, 8 - 104
Target Start/End: Original strand, 6600933 - 6601029
Alignment:
| Q |
8 |
catacaaatacattactaaattttttaaaatcacatatgtaggtttttagttaacagccctacaatttttccttatttgaccctgctgtcccgcaag |
104 |
Q |
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| T |
6600933 |
catacaaatacattactaaattttttaaaatcacatatgtaggtttttagttaacagccctacaatttttccttatttgaccctgctgtcccgcaag |
6601029 |
T |
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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.0000000000005
Query Start/End: Original strand, 55 - 100
Target Start/End: Original strand, 6608393 - 6608438
Alignment:
| Q |
55 |
tagttaacagccctacaatttttccttatttgaccctgctgtcccg |
100 |
Q |
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| T |
6608393 |
tagttaacaaccctacaatttttccttatttgaccctgttgtcccg |
6608438 |
T |
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