View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4436-Insertion-2 (Length: 1041)
Name: NF4436-Insertion-2
Description: NF4436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4436-Insertion-2 |
 | |
|
| [»] scaffold0016 (6 HSPs) |
| | |
|
| [»] scaffold0103 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0016 (Bit Score: 298; Significance: 1e-167; HSPs: 6)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 259 - 568
Target Start/End: Complemental strand, 44710 - 44401
Alignment:
| Q |
259 |
tttagcgtcattgtcttgatcttgaacattaaaggctatgattaattatatttttagttgcagtgtttctatttttaagtgaaaaattatgttaagatat |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44710 |
tttagcgtcattgtcttgatcttgaacattaaaggctatgattaattatatttttagttgcagtgtttctatttttaagtgaaaaattatgttaagatat |
44611 |
T |
|
| Q |
359 |
tcatagatttgaactatattttcaggagcatatgaatgaccgtcggagtatgggaagcaacattcatccgtctagccagtcaaggaaaatttccatagga |
458 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
44610 |
tcatggatttgaactatattttcaggagcatatgaatgaccgttggagtatgggaagcaacattcatccgtctacccagtcaaggaaaatttccatagga |
44511 |
T |
|
| Q |
459 |
gctatggcagaaccgaaagccagctcaagaagcggacctctaagaaaggggttcatttttgttgtccttagaatcaaaaagaaatactaggtgtttgtat |
558 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44510 |
gctatggcagaaccgaaagccagctcaagaagcggacctctaagaaaggggttcatttttgttgtccttagaatcaaaaagaaatactaggtgtttgtat |
44411 |
T |
|
| Q |
559 |
gcttctctac |
568 |
Q |
| |
|
|||||||||| |
|
|
| T |
44410 |
gcttctctac |
44401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 6 - 253
Target Start/End: Complemental strand, 48346 - 48099
Alignment:
| Q |
6 |
catatataccaccagaaactgaattaaatttaacaaactgactagcaacaagaaaaaatgtcacatcacagtgatagggacaatgacaatgataacgttg |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48346 |
catatataccaccagaaactgaattaaatttaacaaactgactagcaacaagaaaaaatgtcacatcacagtgatagggacaatgacaatgataacgttg |
48247 |
T |
|
| Q |
106 |
taactaaattgtcaataggaaatgtagaaacaaattaatttagtaagttatatttctaatcaagttaaactttctttccaaatttctgttgcttgttaat |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48246 |
taactaaattgtcaataggaaatgtagaaacaaattaatttagtaagttatatttctaatcaagttaaactttctttccaaatttctgttgcttgttaat |
48147 |
T |
|
| Q |
206 |
ccgttgacaaacataatattgagatgaaatcaactacatggaatcctt |
253 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
48146 |
ccgttgacaaacatagtattgagatgaaatcaactacatggaatcctt |
48099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #3
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 680 - 949
Target Start/End: Complemental strand, 44288 - 44018
Alignment:
| Q |
680 |
caaataattgttttatgcttggttgatatcactttacagtgatatagatgattttatatgtagttgtaaaattgcatcctcaattttcctgatttatttt |
779 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44288 |
caaataattgttttatgcttggttgatatcactttacagtgatatagatgattttatatgtagttgtaaaattgcatcctcaattttcctgatttatttt |
44189 |
T |
|
| Q |
780 |
cttannnnnnngcaggtggtgaaattattggagtgggttgtattctcagggttctgttcatatccaggtgagattctactgtcttttggtttcc-ttttt |
878 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
44188 |
cttatttttttgcaggcggtgaaattattggagtgggttgtattctcagggttctgttcatatccaggtgagattctactgtcttttggtttcctttttt |
44089 |
T |
|
| Q |
879 |
gtttgtttgttcttgtagatgatcttatatgtccctctatattgattttaatggtgttttttcattttaca |
949 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44088 |
gtttgtttgttcttgtagatgatcttatatgtccctctatattgattttaatggtgttttttcattttaca |
44018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #4
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 100 - 242
Target Start/End: Complemental strand, 78943 - 78810
Alignment:
| Q |
100 |
acgttgtaactaaattgtcaataggaaatgtagaaacaaattaatttagtaagttatatttctaatcaagttaaactttctttccaaatttctgttgctt |
199 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
78943 |
acgttttaactaatttgtcaataggaaatgtagaaacaaattaatctagtaa-ttagatttctaatcaagttaaatattctttccaaatttct------- |
78852 |
T |
|
| Q |
200 |
gttaatccgttgacaaacataatattgagatgaaatcaactac |
242 |
Q |
| |
|
||||| |||||||| | |||||||| ||||||||||||||| |
|
|
| T |
78851 |
-ataatctgttgacaagcttaatattgggatgaaatcaactac |
78810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 79118 - 79046
Alignment:
| Q |
20 |
gaaactgaattaaatttaaca-aactgactagcaacaagaaaaaatgtcacatcacagtgatagggacaatga |
91 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||||| ||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
79118 |
gaaactgaattaaatttaacataaccgactagcaacaggaaaaaatgtcacattacaatgatagggacaatga |
79046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 891 - 940
Target Start/End: Complemental strand, 43603 - 43554
Alignment:
| Q |
891 |
ttgtagatgatcttatatgtccctctatattgattttaatggtgtttttt |
940 |
Q |
| |
|
||||||||||||||| ||| ||||| || |||||||||||||||||||| |
|
|
| T |
43603 |
ttgtagatgatcttaggtgtgcctctttaatgattttaatggtgtttttt |
43554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 282; Significance: 1e-157; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-157
Query Start/End: Original strand, 259 - 568
Target Start/End: Complemental strand, 27259888 - 27259579
Alignment:
| Q |
259 |
tttagcgtcattgtcttgatcttgaacattaaaggctatgattaattatatttttagttgcagtgtttctatttttaagtgaaaaattatgttaagatat |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
27259888 |
tttagcgtcattgtcttgatcttgaacattaaaggctatgattaattatatttttagttgcagtgtttctatttttaagtgaaaaattatattaagatat |
27259789 |
T |
|
| Q |
359 |
tcatagatttgaactatattttcaggagcatatgaatgaccgtcggagtatgggaagcaacattcatccgtctagccagtcaaggaaaatttccatagga |
458 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27259788 |
tcatggatttgaactatattttcaggagcatatgaatgactgtcggagtatgggaagcaacattcatccgtctagccagtcaaggaaaatttccatagga |
27259689 |
T |
|
| Q |
459 |
gctatggcagaaccgaaagccagctcaagaagcggacctctaagaaaggggttcatttttgttgtccttagaatcaaaaagaaatactaggtgtttgtat |
558 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
27259688 |
gctatggcagaaccgaaagccagctcaagaagtggacctctaagaaaggggttcatttttgtcgtccttggaatcaaaaagaaatactaggtgtttgtaa |
27259589 |
T |
|
| Q |
559 |
gcttctctac |
568 |
Q |
| |
|
|||||||||| |
|
|
| T |
27259588 |
gcttctctac |
27259579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 195; E-Value: 1e-105
Query Start/End: Original strand, 690 - 949
Target Start/End: Complemental strand, 27259475 - 27259216
Alignment:
| Q |
690 |
ttttatgcttggttgatatcactttacagtgatatagatgattttatatgtagttgtaaaattgcatcctcaattttcctgatttattttcttannnnnn |
789 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
|
|
| T |
27259475 |
ttttatgcttggttgatatcactttacagtgatatagatgattttatatgtagttgtaaaattgcatccttcattttcctgatttattttattatttttt |
27259376 |
T |
|
| Q |
790 |
ngcaggtggtgaaattattggagtgggttgtattctcagggttctgttcatatccaggtgagattctactgtcttttggtttcct-ttttgtttgtttgt |
888 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
27259375 |
-gcaggcagtgaaattattggagtgggttgtattctcagggttctgttcatatccaggtgagattctactgtcttttggtttccttttttgtttgtttgt |
27259277 |
T |
|
| Q |
889 |
tcttgtagatgatcttatatgtccctctatattgattttaatggtgttttttcattttaca |
949 |
Q |
| |
|
| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
27259276 |
tgttgtagatgatcttatatgtgcctctatattgattttaatggtgttttttcatattaca |
27259216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 891 - 940
Target Start/End: Complemental strand, 2682075 - 2682026
Alignment:
| Q |
891 |
ttgtagatgatcttatatgtccctctatattgattttaatggtgtttttt |
940 |
Q |
| |
|
|||||||||||||||| ||| ||||| || |||||||||||||||||||| |
|
|
| T |
2682075 |
ttgtagatgatcttatgtgtgcctctttaatgattttaatggtgtttttt |
2682026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 173; Significance: 2e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 2e-92
Query Start/End: Original strand, 280 - 509
Target Start/End: Complemental strand, 38315296 - 38315072
Alignment:
| Q |
280 |
ttgaacattaaaggctatgattaattatatttttagttgcagtgtttctatttttaagtgaaaaattatgttaagatattcatagatttgaactatattt |
379 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
38315296 |
ttgaacattaaaggctaggattaattatgattttagttgcagtgtttctatttttaagtgaaaaattatattaagatattcatggatttgaactatattt |
38315197 |
T |
|
| Q |
380 |
tcaggagcatatgaatgaccgtcggagtatgggaagcaacattcatccgtctagccagtcaaggaaaatttccataggagctatggcagaaccgaaagcc |
479 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
38315196 |
tcaggagcatatgaatgactgtcggagtatgggaag---cattcatccgtctagccagtcaaggaaaatttccataggagttatggcagaatcgaaagcc |
38315100 |
T |
|
| Q |
480 |
agctcaagaagcggacctctaagaaagggg |
509 |
Q |
| |
|
|||||||||||||||| |||||||||||| |
|
|
| T |
38315099 |
agctcaagaagcggac--ctaagaaagggg |
38315072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 153; Significance: 1e-80; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 373 - 557
Target Start/End: Original strand, 1478480 - 1478664
Alignment:
| Q |
373 |
tatattttcaggagcatatgaatgaccgtcggagtatgggaagcaacattcatccgtctagccagtcaaggaaaatttccataggagctatggcagaacc |
472 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| | |
|
|
| T |
1478480 |
tatattttcaggagcatatgaatgactgtcggagtatgggaagcaacattcacccgtctagccagtcaaggaaaacttccataggagctatggcagaatc |
1478579 |
T |
|
| Q |
473 |
gaaagccagctcaagaagcggacctctaagaaaggggttcatttttgttgtccttagaatcaaaaagaaatactaggtgtttgta |
557 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1478580 |
aaaagccagctcaagaagtggacctctaagtaaggggttcatttctgttgtccttagaatcaaaaagaaatactaggtgtttgta |
1478664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0103 (Bit Score: 64; Significance: 2e-27; HSPs: 1)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 259 - 330
Target Start/End: Original strand, 8433 - 8504
Alignment:
| Q |
259 |
tttagcgtcattgtcttgatcttgaacattaaaggctatgattaattatatttttagttgcagtgtttctat |
330 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
8433 |
tttagcgtcattgtcttaatcttgaacattaaaggctaggattaattatatttttagttgcagtgtttctat |
8504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 2e-27; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 259 - 330
Target Start/End: Complemental strand, 2631579 - 2631508
Alignment:
| Q |
259 |
tttagcgtcattgtcttgatcttgaacattaaaggctatgattaattatatttttagttgcagtgtttctat |
330 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
2631579 |
tttagcgtcattgtcttaatcttgaacattaaaggctaggattaattatatttttagttgcagtgtttctat |
2631508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 249
Target Start/End: Original strand, 33716132 - 33716234
Alignment:
| Q |
147 |
agtaagttatatttctaatcaagttaaactttctttccaaatttctgttgcttgttaatccgttgacaaacataatattgagatgaaatcaactacatgg |
246 |
Q |
| |
|
||||||| | |||| |||| |||||||| |||| || |||||||||||| |||| |||| |||| |||||||||||||| |||||||| |||| || || |
|
|
| T |
33716132 |
agtaagtaagatttttaatgaagttaaattttcctttcaaatttctgtttcttggtaatacgttaacaaacataatatttggatgaaattaactgcacgg |
33716231 |
T |
|
| Q |
247 |
aat |
249 |
Q |
| |
|
||| |
|
|
| T |
33716232 |
aat |
33716234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 225
Target Start/End: Original strand, 21275012 - 21275086
Alignment:
| Q |
150 |
aagttatatttctaatcaagttaaactttctttccaaatttctgttgcttgttaatccgttgacaaacataatatt |
225 |
Q |
| |
|
|||||||||||||||| |||||||| | |||| | | |||||| |||||||||||||||| |||||||| ||||| |
|
|
| T |
21275012 |
aagttatatttctaatgaagttaaattgtctt-cgacatttctattgcttgttaatccgtaaacaaacatgatatt |
21275086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 151
Target Start/End: Original strand, 21178045 - 21178082
Alignment:
| Q |
114 |
ttgtcaataggaaatgtagaaacaaattaatttagtaa |
151 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
21178045 |
ttgttaataggaaatgtagaaacaaatgaatttagtaa |
21178082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 891 - 940
Target Start/End: Original strand, 5481236 - 5481285
Alignment:
| Q |
891 |
ttgtagatgatcttatatgtccctctatattgattttaatggtgtttttt |
940 |
Q |
| |
|
|||||||||||||||| ||| ||||| || |||||||||||||||||||| |
|
|
| T |
5481236 |
ttgtagatgatcttatgtgtgcctctttaatgattttaatggtgtttttt |
5481285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 891 - 940
Target Start/End: Complemental strand, 45005501 - 45005452
Alignment:
| Q |
891 |
ttgtagatgatcttatatgtccctctatattgattttaatggtgtttttt |
940 |
Q |
| |
|
|||||||||||||||| ||| ||||| || |||||||||||||||||||| |
|
|
| T |
45005501 |
ttgtagatgatcttatgtgtgcctctttaatgattttaatggtgtttttt |
45005452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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