View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4436-Insertion-3 (Length: 1030)
Name: NF4436-Insertion-3
Description: NF4436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4436-Insertion-3 |
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Alignment Details
Target: chr7 (Bit Score: 609; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 609; E-Value: 0
Query Start/End: Original strand, 6 - 662
Target Start/End: Complemental strand, 42038665 - 42038009
Alignment:
| Q |
6 |
caaaaacaatagtaaaggttgcactcgggacaacctacttacgcttagaatgtttatttaagcttgtgaatactggttgtgttttctgtggtactctgat |
105 |
Q |
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| T |
42038665 |
caaaaacaatagtaaaggtcgcactcgggacaacctacttacgcttagaatgtttatttaagcttgtgaatactggttgtgttttctgtggtaatctgat |
42038566 |
T |
|
| Q |
106 |
ggagtcggtgattcacttgttcatgtcctttgacaccatcctctctatgtggtattgtatagttggatagttgggttggcagtttgttcttcttcaggat |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
42038565 |
ggagtcggtgattcacttgttcatgtcctttgacaccatcgtctctatgtggtattgtatagttggatggttgggttggcagtttgttcttcttcaggat |
42038466 |
T |
|
| Q |
206 |
cttggttgcttttgtgtctttttgggggttgggttatagtaagatggttaggttatgtttgacgcttgtttgacatgacgcttgtatgacatgttgtcta |
305 |
Q |
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| T |
42038465 |
cttggttgcttttgtgtctttttgggggttgggttatagtaagatggtcaggttatgtttgacgcttgtttgacatggcgcttgtatgacatgttgtcta |
42038366 |
T |
|
| Q |
306 |
gcggactatttggaactctcacaatgatctaatctttgttgggatgatttatttatgttgagttcttgttggatagggcaaagtttgatcgatagggcaa |
405 |
Q |
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| T |
42038365 |
gcggactatttggaactctcacaatgatctaatctttgttgggatgatctatttatgttgagttcttgttggatagggcaaagtttgatcgatagggcaa |
42038266 |
T |
|
| Q |
406 |
aattttgatggtggaagtgtttctcggtaaaatcttggcagtgcatacttcttctatgagtgggagacacatccagccatgagttggaaccgtagaatct |
505 |
Q |
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| T |
42038265 |
aattttgatcgtggaagtgtttctcggtaaaatcttggcagtgcatacttcttctatgagtgggagacacatccagccgtgagttggaaccgtagaatct |
42038166 |
T |
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| Q |
506 |
tgtgtgagtgtctgtgttggggtctcagcgggcttgggtggtttgtcttccaattctcgacagcccattaggtttggtccctctccctgttcccctaggg |
605 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42038165 |
tgtgtgagtgtctgtgttggggtctcagcgggcttgggtggtttgtcttccaatcctcgacagcccattaggtttggtccctctccctgttcccctaggg |
42038066 |
T |
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| Q |
606 |
aatgggcaacttccgacgagtagtctggttttggaggttattctcaggtttttggga |
662 |
Q |
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| T |
42038065 |
aatgggcaacttccgacgggtagtctggttttgtaggttattctcaggtttttggga |
42038009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 150; E-Value: 9e-79
Query Start/End: Original strand, 731 - 941
Target Start/End: Complemental strand, 42037940 - 42037730
Alignment:
| Q |
731 |
ggtacccctggggctcaggctgctattttctgtttgttttgtagcactcttgcacagcctctttattttgttaatatatttatctttgccataa-aaaat |
829 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
42037940 |
ggtacccctggggctcaggctgctactttctgtttgttttgtagcactcttgcacaacctctttattttgttaatatatttatctttgccataaaaaaat |
42037841 |
T |
|
| Q |
830 |
agtaaagtatgaacatgatacaccccttaagaaattgtaaatacttatgcttattatattatcaatactgatgtgtannnnnnnnaatggcaaacaaag- |
928 |
Q |
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| T |
42037840 |
agtaaagtatgaacatgatgca--ccttaagaaattgtaaatacttatgcttattatattatcaatactgatgtgtattttttttaatggcaaacaaaga |
42037743 |
T |
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| Q |
929 |
aatattattgaaa |
941 |
Q |
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||||||||||||| |
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| T |
42037742 |
aatattattgaaa |
42037730 |
T |
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