View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4436-Insertion-4 (Length: 1029)

Name: NF4436-Insertion-4
Description: NF4436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4436-Insertion-4
NF4436-Insertion-4
[»] chr2 (18 HSPs)
chr2 (7-680)||(17247260-17247949)
chr2 (726-802)||(15018022-15018098)
chr2 (407-530)||(17250697-17250820)
chr2 (843-901)||(25977860-25977916)
chr2 (852-901)||(25979264-25979311)
chr2 (845-881)||(15531021-15531057)
chr2 (851-901)||(2412441-2412489)
chr2 (173-250)||(43115049-43115126)
chr2 (856-903)||(24754169-24754214)
chr2 (852-901)||(1777468-1777515)
chr2 (851-881)||(23861750-23861780)
chr2 (847-881)||(24358610-24358644)
chr2 (853-909)||(25283276-25283331)
chr2 (840-881)||(2481529-2481570)
chr2 (848-881)||(14003404-14003437)
chr2 (819-852)||(17248001-17248034)
chr2 (353-386)||(17250662-17250695)
chr2 (848-881)||(20131312-20131345)
[»] chr7 (25 HSPs)
chr7 (8-288)||(31403673-31403953)
chr7 (41-199)||(42304904-42305061)
chr7 (7-155)||(3884146-3884295)
chr7 (7-199)||(3897952-3898139)
chr7 (726-802)||(25924415-25924491)
chr7 (161-250)||(34762666-34762755)
chr7 (850-901)||(31848157-31848206)
chr7 (850-901)||(32197922-32197971)
chr7 (852-901)||(24195606-24195653)
chr7 (849-901)||(5611520-5611570)
chr7 (852-899)||(13418949-13418994)
chr7 (851-901)||(24197116-24197164)
chr7 (842-881)||(35838309-35838348)
chr7 (851-881)||(12932755-12932785)
chr7 (847-881)||(25988379-25988413)
chr7 (856-901)||(32544787-32544830)
chr7 (852-901)||(41693644-41693691)
chr7 (851-884)||(6892229-6892262)
chr7 (848-881)||(11767247-11767280)
chr7 (848-881)||(23399607-23399640)
chr7 (852-881)||(35212067-35212096)
chr7 (848-881)||(36748193-36748226)
chr7 (848-881)||(41054208-41054241)
chr7 (726-799)||(45992924-45992997)
chr7 (848-881)||(46759653-46759686)
[»] chr1 (29 HSPs)
chr1 (7-287)||(43427320-43427600)
chr1 (726-802)||(25504712-25504788)
chr1 (853-909)||(11711258-11711312)
chr1 (173-250)||(49508567-49508644)
chr1 (846-901)||(35721094-35721147)
chr1 (171-250)||(8771233-8771312)
chr1 (852-901)||(20723701-20723748)
chr1 (852-901)||(37395632-37395679)
chr1 (852-901)||(45979509-45979556)
chr1 (841-901)||(27264229-27264287)
chr1 (849-901)||(34934760-34934810)
chr1 (849-897)||(35722302-35722348)
chr1 (842-881)||(15516571-15516610)
chr1 (847-901)||(26863854-26863906)
chr1 (855-912)||(51240121-51240177)
chr1 (852-901)||(9774901-9774948)
chr1 (852-901)||(17977572-17977619)
chr1 (853-909)||(23469973-23470028)
chr1 (852-901)||(27262907-27262954)
chr1 (852-897)||(35911905-35911948)
chr1 (852-912)||(48594049-48594108)
chr1 (852-912)||(48598660-48598719)
chr1 (848-881)||(2604158-2604191)
chr1 (848-881)||(10887228-10887261)
chr1 (853-901)||(20722472-20722518)
chr1 (853-901)||(24609919-24609965)
chr1 (853-901)||(37396853-37396899)
chr1 (173-250)||(45432822-45432899)
chr1 (853-901)||(46075063-46075109)
[»] chr3 (19 HSPs)
chr3 (88-249)||(19671160-19671309)
chr3 (843-901)||(53121292-53121348)
chr3 (851-901)||(54437480-54437528)
chr3 (848-897)||(46026071-46026118)
chr3 (844-901)||(52403137-52403192)
chr3 (842-897)||(20585661-20585714)
chr3 (850-901)||(47433822-47433871)
chr3 (851-901)||(39820617-39820665)
chr3 (846-881)||(52342188-52342223)
chr3 (839-881)||(26089716-26089758)
chr3 (847-881)||(30128278-30128312)
chr3 (843-877)||(50998874-50998908)
chr3 (852-901)||(52401016-52401063)
chr3 (848-881)||(12740902-12740935)
chr3 (848-881)||(39132878-39132911)
chr3 (848-881)||(40545559-40545592)
chr3 (848-881)||(47005491-47005524)
chr3 (848-881)||(51550418-51550451)
chr3 (853-901)||(52708630-52708676)
[»] chr5 (10 HSPs)
chr5 (726-802)||(22094969-22095045)
chr5 (850-901)||(31540493-31540542)
chr5 (852-901)||(3936577-3936624)
chr5 (850-901)||(3954049-3954098)
chr5 (852-909)||(27571133-27571189)
chr5 (848-901)||(4565388-4565439)
chr5 (843-881)||(5917116-5917154)
chr5 (847-881)||(19565803-19565837)
chr5 (847-881)||(35877024-35877058)
chr5 (840-881)||(29875697-29875738)
[»] chr6 (17 HSPs)
chr6 (726-802)||(503251-503327)
chr6 (726-802)||(8264568-8264644)
chr6 (726-802)||(5085745-5085821)
chr6 (849-897)||(3276363-3276409)
chr6 (848-901)||(1972395-1972446)
chr6 (844-881)||(6412209-6412246)
chr6 (848-881)||(17517340-17517373)
chr6 (850-897)||(21953203-21953248)
chr6 (855-901)||(20895960-20896004)
chr6 (852-901)||(16995450-16995497)
chr6 (847-881)||(19129492-19129526)
chr6 (847-881)||(19321103-19321137)
chr6 (848-881)||(1007119-1007152)
chr6 (726-799)||(19255988-19256061)
chr6 (853-901)||(20393281-20393327)
chr6 (853-901)||(20897510-20897556)
chr6 (726-799)||(33640266-33640339)
[»] chr4 (19 HSPs)
chr4 (726-800)||(8935420-8935494)
chr4 (726-802)||(19114781-19114857)
chr4 (726-802)||(49925985-49926061)
chr4 (726-799)||(19648057-19648130)
chr4 (853-901)||(22204055-22204101)
chr4 (501-545)||(49805836-49805880)
chr4 (846-881)||(42823769-42823804)
chr4 (852-901)||(3880509-3880556)
chr4 (847-881)||(13074097-13074131)
chr4 (768-802)||(23657740-23657774)
chr4 (852-901)||(33137241-33137288)
chr4 (848-897)||(42359363-42359410)
chr4 (848-901)||(45619744-45619795)
chr4 (852-881)||(5259182-5259211)
chr4 (848-881)||(14594201-14594234)
chr4 (853-901)||(32699327-32699373)
chr4 (848-881)||(35464013-35464046)
chr4 (852-881)||(42358031-42358060)
chr4 (853-901)||(44705299-44705345)
[»] chr8 (16 HSPs)
chr8 (726-799)||(4987784-4987857)
chr8 (847-901)||(10717115-10717167)
chr8 (843-881)||(28346730-28346768)
chr8 (848-901)||(28998006-28998057)
chr8 (844-881)||(11019829-11019866)
chr8 (846-901)||(3483626-3483679)
chr8 (851-901)||(10718461-10718509)
chr8 (171-250)||(13533485-13533563)
chr8 (171-250)||(13623025-13623103)
chr8 (847-901)||(38658475-38658527)
chr8 (852-901)||(22272283-22272330)
chr8 (852-901)||(30123151-30123198)
chr8 (853-897)||(1420459-1420501)
chr8 (848-881)||(10337114-10337147)
chr8 (852-881)||(14197824-14197853)
chr8 (841-901)||(41847193-41847251)
[»] scaffold0002 (2 HSPs)
scaffold0002 (850-901)||(345910-345959)
scaffold0002 (847-901)||(376382-376434)
[»] scaffold0839 (1 HSPs)
scaffold0839 (161-250)||(4613-4702)
[»] scaffold0517 (2 HSPs)
scaffold0517 (852-901)||(11535-11582)
scaffold0517 (853-901)||(10315-10361)
[»] scaffold0010 (1 HSPs)
scaffold0010 (171-250)||(236634-236712)
[»] scaffold0684 (1 HSPs)
scaffold0684 (848-881)||(2632-2665)
[»] scaffold0005 (1 HSPs)
scaffold0005 (848-881)||(223144-223177)
[»] scaffold0001 (1 HSPs)
scaffold0001 (853-901)||(119593-119639)


Alignment Details
Target: chr2 (Bit Score: 328; Significance: 0; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 7 - 680
Target Start/End: Original strand, 17247260 - 17247949
Alignment:
Q  7 aattgtcacatgtcatctgttatctttgagtccaactgtaggttacttgttgatactattaactccaactttactccaaacaatgagttcggtgatatca 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||    
T  17247260 aattgtcacatgtcatctgttatctttgagtccaactgtaggttacttgttgatactattaactccaactctacttcaaacaatgagttcggagatatca 17247359  T
Q  107 tttctagatgtaagggtctattgtcgtctcgcaataattttattttgagctatataagaagactagcaaataaggtagctgataacatagctaaaagttc 206  Q
    ||||||||||||||| ||||||||| |||||||||||||||||| |||  ||| | ||||| | | |||||||||||| | ||||||||| ||||  |||    
T  17247360 tttctagatgtaaggatctattgtcatctcgcaataattttattgtgaattatgtcagaaggcaaacaaataaggtagttcataacatagttaaagcttc 17247459  T
Q  207 cttatctcaccctaacctccatattttttatgaagtaccatctatat------tgtacccgctattttttaacgaaatgaattagttccgtctttgtnnn 300  Q
    ||||||||||| ||  |||||||||||| |||| |||||||||| ||      |||||||| ||||||||||  |||| ||||||||| |||||||        
T  17247460 cttatctcaccttagtctccatatttttcatgaggtaccatctacatctacattgtacccgttattttttaataaaataaattagttctgtctttgctaa 17247559  T
Q  301 nnnnnntagcaccagtagtgcttcatgcacaacccgtnnnnnnnnnntacaaattagcgcataactgacaaataaatataagaaaaccactgtttnnnnn 400  Q
          |||||| || |||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||| ||| |||         
T  17247560 aaaaaatagcactagaagtgcttcatgcacaacccgtaaaaaaaa--tacaaattagcgcataactgacaaataaatataagaaaactactttttttttt 17247657  T
Q  401 nnnnnn----ccacaacaaacaaaataatataacacaactaactattttttctcaaaactaacctagctccaatcccagcaattaagtttattctttttt 496  Q
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17247658 aaaaaaaaaaccacaacaaacaaaataatataacacaactaactattttttctcaaaactaacctagctccaatcccagcaattaagtttattctttttt 17247757  T
Q  497 -attttatagaatgacctaaaaagtaatcaatataaatcttgttaagaaaatagtcaatggtcattagaacatttaatattgttgttaagagattcatag 595  Q
     ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  17247758 gattttatagaatgacctaaaaagtaatcaatataaatcttgtt-agaaaatagtcaatagtcattagaacatttaatattattgttaagagattcatag 17247856  T
Q  596 tttcgaatcaattagaaatgagaag--------nnnnnnnnnnnagtggaaatgagaagattttagaaactcgtcggacaagcttaatgaatg 680  Q
    ||||||||||||||| |||||||||                   ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  17247857 tttcgaatcaattagcaatgagaagatttttttttttttttggtagtggcaatgagaagattttagaaactcgtcggacaagcttaatgaatg 17247949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 726 - 802
Target Start/End: Complemental strand, 15018098 - 15018022
Alignment:
Q  726 atacttgattgggttcggtacctttgagtgttcgttttcgtgggttgtttgagctttatgaaaataaatctgttaca 802  Q
    ||||||| ||||| ||||| |||||| |||||||||||||| |||| |||||||||||||| ||||||| |||||||    
T  15018098 atacttggttgggatcggttcctttgtgtgttcgttttcgtaggttatttgagctttatgagaataaatatgttaca 15018022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 407 - 530
Target Start/End: Original strand, 17250697 - 17250820
Alignment:
Q  407 ccacaacaaacaaaataatataacacaactaactattttttctcaaaactaacctagctccaatccc---agcaattaagtttattcttttttattttat 503  Q
    ||||||||||||||| |   |||||| || ||||||||||||||||||||| || ||||||||||||   | ||||||| |||||||| |||  || |||    
T  17250697 ccacaacaaacaaaaga---taacaccacaaactattttttctcaaaactagccaagctccaatcccaataacaattaaatttattctctttgtttatat 17250793  T
Q  504 agaatgacctaaaaagtaatcaatata 530  Q
    | ||||||| ||||||||| |||||||    
T  17250794 aaaatgaccgaaaaagtaaacaatata 17250820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 843 - 901
Target Start/End: Original strand, 25977860 - 25977916
Alignment:
Q  843 attaattttaggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttt 901  Q
    ||||||||||||||||||||||||||||||||||||  |||||||| || |||||||||    
T  25977860 attaattttaggctaaaatatgtttttggtccctgc--aaatatagtgagtttgggttt 25977916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 852 - 901
Target Start/End: Complemental strand, 25979311 - 25979264
Alignment:
Q  852 aggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttt 901  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||    
T  25979311 aggctaaaatatgtttttggtccctgc--aaatatagcgaatttgggttt 25979264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 845 - 881
Target Start/End: Original strand, 15531021 - 15531057
Alignment:
Q  845 taattttaggctaaaatatgtttttggtccctgcaaa 881  Q
    |||||||||||||||||||||||||||||||||||||    
T  15531021 taattttaggctaaaatatgtttttggtccctgcaaa 15531057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 851 - 901
Target Start/End: Complemental strand, 2412489 - 2412441
Alignment:
Q  851 taggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttt 901  Q
    ||||||||||||||||||||||||||||  ||||||||||| |||||||||    
T  2412489 taggctaaaatatgtttttggtccctgc--aaatatagcgagtttgggttt 2412441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 250
Target Start/End: Original strand, 43115049 - 43115126
Alignment:
Q  173 caaataaggtagctgataacatagctaaaagttccttatctcaccctaacctccatattttttatgaagtaccatcta 250  Q
    |||||||||||||| |||||||||||| |  ||||||||| ||||||| || ||||||||| | ||| ||||| ||||    
T  43115049 caaataaggtagctcataacatagctagagcttccttatcccaccctagcccccatattttctctgatgtaccgtcta 43115126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 856 - 903
Target Start/End: Complemental strand, 24754214 - 24754169
Alignment:
Q  856 taaaatatgtttttggtccctgcaaaaatatagcgaatttgggtttga 903  Q
    |||||||||||||||||||||||  |||||| ||||||||||||||||    
T  24754214 taaaatatgtttttggtccctgc--aaatatggcgaatttgggtttga 24754169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 852 - 901
Target Start/End: Original strand, 1777468 - 1777515
Alignment:
Q  852 aggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttt 901  Q
    |||||||||||||||||||||||||||  ||||||||||| |||| ||||    
T  1777468 aggctaaaatatgtttttggtccctgc--aaatatagcgagtttgagttt 1777515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 851 - 881
Target Start/End: Original strand, 23861750 - 23861780
Alignment:
Q  851 taggctaaaatatgtttttggtccctgcaaa 881  Q
    |||||||||||||||||||||||||||||||    
T  23861750 taggctaaaatatgtttttggtccctgcaaa 23861780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 847 - 881
Target Start/End: Original strand, 24358610 - 24358644
Alignment:
Q  847 attttaggctaaaatatgtttttggtccctgcaaa 881  Q
    |||||||||||||||||| ||||||||||||||||    
T  24358610 attttaggctaaaatatggttttggtccctgcaaa 24358644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 853 - 909
Target Start/End: Complemental strand, 25283331 - 25283276
Alignment:
Q  853 ggctaaaatatgtttttggtccctgcaaaaatatagcgaatttg-ggtttgatccctg 909  Q
    ||||||||||||||||||||| ||||  |||||||||||||||| | |||||||||||    
T  25283331 ggctaaaatatgtttttggtcactgc--aaatatagcgaatttgagttttgatccctg 25283276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 840 - 881
Target Start/End: Complemental strand, 2481570 - 2481529
Alignment:
Q  840 atcattaattttaggctaaaatatgtttttggtccctgcaaa 881  Q
    |||||| |||| ||||||||||||| ||||||||||||||||    
T  2481570 atcatttatttaaggctaaaatatggttttggtccctgcaaa 2481529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 848 - 881
Target Start/End: Original strand, 14003404 - 14003437
Alignment:
Q  848 ttttaggctaaaatatgtttttggtccctgcaaa 881  Q
    ||||||||||||||||| ||||||||||||||||    
T  14003404 ttttaggctaaaatatggttttggtccctgcaaa 14003437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 819 - 852
Target Start/End: Original strand, 17248001 - 17248034
Alignment:
Q  819 caattagaacacaattaacatatcattaatttta 852  Q
    |||||| |||||||||||||||||||||||||||    
T  17248001 caattaaaacacaattaacatatcattaatttta 17248034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 353 - 386
Target Start/End: Original strand, 17250662 - 17250695
Alignment:
Q  353 attagcgcataactgacaaataaatataagaaaa 386  Q
    ||||| ||||||||||||||||||||||||||||    
T  17250662 attagtgcataactgacaaataaatataagaaaa 17250695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 848 - 881
Target Start/End: Original strand, 20131312 - 20131345
Alignment:
Q  848 ttttaggctaaaatatgtttttggtccctgcaaa 881  Q
    ||||||||||||||||| ||||||||||||||||    
T  20131312 ttttaggctaaaatatggttttggtccctgcaaa 20131345  T

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Target: chr7 (Bit Score: 153; Significance: 1e-80; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 8 - 288
Target Start/End: Original strand, 31403673 - 31403953
Alignment:
Q  8 attgtcacatgtcatctgttatctttgagtccaactgtaggttacttgttgatactattaactccaactttactccaaacaatgagttcggtgatatcat 107  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||| | ||||| ||    
T  31403673 attgccacatgccatctgttatctttgagtccaactgtaggttacttgttgatgctattaactccaaatctactccaaacaatgagttcagagatattat 31403772  T
Q  108 ttctagatgtaagggtctattgtcgtctcgcaataattttattttgagctatataagaagactagcaaataaggtagctgataacatagctaaaagttcc 207  Q
     ||||||||||||| |||||| || |||| ||||||||||||| |||||||| | || |||| | |||||| ||||||| |||||||||||| |  || |    
T  31403773 atctagatgtaaggatctattatcatctcacaataattttattgtgagctatgtcaggagacaaacaaatagggtagctcataacatagctagagctttc 31403872  T
Q  208 ttatctcaccctaacctccatattttttatgaagtaccatctatattgtacccgctattttttaacgaaatgaattagttc 288  Q
    ||||||||||||| ||||||||||||| |||||||||| |||| |||||||||| |||| ||||| |||||||||||||||    
T  31403873 ttatctcaccctagcctccatatttttcatgaagtaccctctacattgtacccgttattctttaatgaaatgaattagttc 31403953  T

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Target: chr7; HSP #2
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 41 - 199
Target Start/End: Complemental strand, 42305061 - 42304904
Alignment:
Q  41 actgtaggttacttgttgatactattaactccaactttactccaaacaatgagttcggtgatatcatttctagatgtaagggtctattgtcgtctcgcaa 140  Q
    ||||||||||||||| |||||| ||||||||||||| ||||||| | ||||||||||| ||| | ||||||||||||| || ||||||||| |||| |||    
T  42305061 actgtaggttacttgctgatac-attaactccaactctactccacataatgagttcggagatgttatttctagatgtatggatctattgtcatctcacaa 42304963  T
Q  141 taattttattttgagctatataagaagactagcaaataaggtagctgataacatagcta 199  Q
    ||||||||||||||||||| | || || | | ||||||||||| || ||||||||||||    
T  42304962 taattttattttgagctatgtgaggaggcaaacaaataaggtatcttataacatagcta 42304904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 7 - 155
Target Start/End: Complemental strand, 3884295 - 3884146
Alignment:
Q  7 aattgtcacatgtcatctgttatctttgagtccaactgtaggttacttgttgatactattaactccaa-ctttactccaaacaatgagttcggtgatatc 105  Q
    |||||||||||| |||||||||| |  | |||| ||||||||||||||||||| |||||||||| ||| || ||||||| | ||||||||||| |||||     
T  3884295 aattgtcacatgacatctgttatatccgtgtccgactgtaggttacttgttgacactattaacttcaaactctactccacataatgagttcggagatatt 3884196  T
Q  106 atttctagatgtaagggtctattgtcgtctcgcaataattttattttgag 155  Q
    |||||||||||||||| ||||||||| |||| ||||||||||||| ||||    
T  3884195 atttctagatgtaaggatctattgtcatctcacaataattttattgtgag 3884146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 7 - 199
Target Start/End: Complemental strand, 3898139 - 3897952
Alignment:
Q  7 aattgtcacatgtcatctgttatctttgagtccaactgtaggttacttgttgatactattaactccaactttactccaaacaatgagttcggtgatatca 106  Q
    |||||||| ||| ||| |||||||||||||||| ||| ||||||||||||||  |||||||||||||||| ||||||     ||||||| || ||||| |    
T  3898139 aattgtcatatgacatttgttatctttgagtccgactataggttacttgttggcactattaactccaactctactcc-----atgagtttggagatatta 3898045  T
Q  107 tttctagatgtaagggtctattgtcgtctcgcaataattttattttgagctatataagaagactagcaaataaggtagctgataacatagcta 199  Q
    ||| ||||||||||| ||||||||| ||||  |||||||||||| ||||  || | ||||| | |  ||||||||||||| ||||||||||||    
T  3898044 tttatagatgtaaggatctattgtcatctcataataattttattgtgagtaatgtcagaaggcaaataaataaggtagctcataacatagcta 3897952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 726 - 802
Target Start/End: Complemental strand, 25924491 - 25924415
Alignment:
Q  726 atacttgattgggttcggtacctttgagtgttcgttttcgtgggttgtttgagctttatgaaaataaatctgttaca 802  Q
    ||||||| ||||| ||| |||||||| |||||| ||||||| ||||||||||||||| ||||||||||| |||||||    
T  25924491 atacttggttggggtcgatacctttgtgtgttcattttcgtaggttgtttgagctttttgaaaataaatatgttaca 25924415  T

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Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 161 - 250
Target Start/End: Complemental strand, 34762755 - 34762666
Alignment:
Q  161 taagaagactagcaaataaggtagctgataacatagctaaaagttccttatctcaccctaacctccatattttttatgaagtaccatcta 250  Q
    |||| |||| |||||||||||||||| |||||||||||| |  ||||||||| ||||||| || ||||||||| | ||| ||||| ||||    
T  34762755 taaggagacaagcaaataaggtagctcataacatagctagagcttccttatcccaccctagcccccatattttctttgatgtaccgtcta 34762666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 850 - 901
Target Start/End: Complemental strand, 31848206 - 31848157
Alignment:
Q  850 ttaggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttt 901  Q
    |||||||||||||||||||| ||||||||  |||||||||||||||||||||    
T  31848206 ttaggctaaaatatgtttttagtccctgc--aaatatagcgaatttgggttt 31848157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 850 - 901
Target Start/End: Complemental strand, 32197971 - 32197922
Alignment:
Q  850 ttaggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttt 901  Q
    ||||||||||||||| |||||||||||||  |||||||||||||||||||||    
T  32197971 ttaggctaaaatatgcttttggtccctgc--aaatatagcgaatttgggttt 32197922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 852 - 901
Target Start/End: Original strand, 24195606 - 24195653
Alignment:
Q  852 aggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttt 901  Q
    |||||||||||||||||||||||||||  ||||||||||| |||||||||    
T  24195606 aggctaaaatatgtttttggtccctgc--aaatatagcgagtttgggttt 24195653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 849 - 901
Target Start/End: Complemental strand, 5611570 - 5611520
Alignment:
Q  849 tttaggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttt 901  Q
    |||||||||||||||| |||||||||||||  ||||||||||| |||||||||    
T  5611570 tttaggctaaaatatgattttggtccctgc--aaatatagcgagtttgggttt 5611520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 852 - 899
Target Start/End: Original strand, 13418949 - 13418994
Alignment:
Q  852 aggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggt 899  Q
    |||||||||||||||||||||||||||  |||||| ||||||||||||    
T  13418949 aggctaaaatatgtttttggtccctgc--aaatattgcgaatttgggt 13418994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 851 - 901
Target Start/End: Complemental strand, 24197164 - 24197116
Alignment:
Q  851 taggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttt 901  Q
    |||||||||||||| |||||||||||||  |||||||||||||||| ||||    
T  24197164 taggctaaaatatgcttttggtccctgc--aaatatagcgaatttgagttt 24197116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 842 - 881
Target Start/End: Complemental strand, 35838348 - 35838309
Alignment:
Q  842 cattaattttaggctaaaatatgtttttggtccctgcaaa 881  Q
    ||||| ||||||||||||||||| ||||||||||||||||    
T  35838348 cattatttttaggctaaaatatggttttggtccctgcaaa 35838309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 851 - 881
Target Start/End: Complemental strand, 12932785 - 12932755
Alignment:
Q  851 taggctaaaatatgtttttggtccctgcaaa 881  Q
    |||||||||||||||||||||||||||||||    
T  12932785 taggctaaaatatgtttttggtccctgcaaa 12932755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 847 - 881
Target Start/End: Original strand, 25988379 - 25988413
Alignment:
Q  847 attttaggctaaaatatgtttttggtccctgcaaa 881  Q
    |||||||||||||||||| ||||||||||||||||    
T  25988379 attttaggctaaaatatggttttggtccctgcaaa 25988413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 856 - 901
Target Start/End: Complemental strand, 32544830 - 32544787
Alignment:
Q  856 taaaatatgtttttggtccctgcaaaaatatagcgaatttgggttt 901  Q
    ||||||||| |||||||||||||  |||||||||||||||||||||    
T  32544830 taaaatatgattttggtccctgc--aaatatagcgaatttgggttt 32544787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 852 - 901
Target Start/End: Original strand, 41693644 - 41693691
Alignment:
Q  852 aggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttt 901  Q
    ||||||||||||||||||| |||||||  |||||| ||||||||||||||    
T  41693644 aggctaaaatatgtttttgatccctgc--aaatatggcgaatttgggttt 41693691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 851 - 884
Target Start/End: Complemental strand, 6892262 - 6892229
Alignment:
Q  851 taggctaaaatatgtttttggtccctgcaaaaat 884  Q
    |||||||||||||| |||||||||||||||||||    
T  6892262 taggctaaaatatggttttggtccctgcaaaaat 6892229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 848 - 881
Target Start/End: Complemental strand, 11767280 - 11767247
Alignment:
Q  848 ttttaggctaaaatatgtttttggtccctgcaaa 881  Q
    ||||||||||||||||| ||||||||||||||||    
T  11767280 ttttaggctaaaatatggttttggtccctgcaaa 11767247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 848 - 881
Target Start/End: Original strand, 23399607 - 23399640
Alignment:
Q  848 ttttaggctaaaatatgtttttggtccctgcaaa 881  Q
    ||||||||||||||||| ||||||||||||||||    
T  23399607 ttttaggctaaaatatggttttggtccctgcaaa 23399640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 852 - 881
Target Start/End: Original strand, 35212067 - 35212096
Alignment:
Q  852 aggctaaaatatgtttttggtccctgcaaa 881  Q
    ||||||||||||||||||||||||||||||    
T  35212067 aggctaaaatatgtttttggtccctgcaaa 35212096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 848 - 881
Target Start/End: Original strand, 36748193 - 36748226
Alignment:
Q  848 ttttaggctaaaatatgtttttggtccctgcaaa 881  Q
    |||| |||||||||||||||||||||||||||||    
T  36748193 tttttggctaaaatatgtttttggtccctgcaaa 36748226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 848 - 881
Target Start/End: Complemental strand, 41054241 - 41054208
Alignment:
Q  848 ttttaggctaaaatatgtttttggtccctgcaaa 881  Q
    ||||||||||||||||| ||||||||||||||||    
T  41054241 ttttaggctaaaatatggttttggtccctgcaaa 41054208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 726 - 799
Target Start/End: Complemental strand, 45992997 - 45992924
Alignment:
Q  726 atacttgattgggttcggtacctttgagtgttcgttttcgtgggttgtttgagctttatgaaaataaatctgtt 799  Q
    ||||||| ||||| ||| | |||||| |||||||||| ||| ||||||||||||||| ||  ||||||| ||||    
T  45992997 atacttggttggggtcgattcctttgtgtgttcgtttccgtaggttgtttgagctttttgttaataaatatgtt 45992924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 848 - 881
Target Start/End: Original strand, 46759653 - 46759686
Alignment:
Q  848 ttttaggctaaaatatgtttttggtccctgcaaa 881  Q
    ||||||||||||||||| ||||||||||||||||    
T  46759653 ttttaggctaaaatatggttttggtccctgcaaa 46759686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 126; Significance: 2e-64; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 7 - 287
Target Start/End: Original strand, 43427320 - 43427600
Alignment:
Q  7 aattgtcacatgtcatctgttatctttgagtccaactgtaggttacttgttgatactattaactccaactttactccaaacaatgagttcggtgatatca 106  Q
    |||||||||||  |||||||||||||||||||  || ||| |||| |||||||||||||||||||||||| |||||||||||||||||| || ||||| |    
T  43427320 aattgtcacataccatctgttatctttgagtctgaccgtaagttatttgttgatactattaactccaactctactccaaacaatgagtttggagatatta 43427419  T
Q  107 tttctagatgtaagggtctattgtcgtctcgcaataattttattttgagctatataagaagactagcaaataaggtagctgataacatagctaaaagttc 206  Q
    ||||||||||||||  ||||||||| |||||||||||||||||| |||||||| | || || | | |||||| ||||||| |||||||||||| |  | |    
T  43427420 tttctagatgtaagaatctattgtcatctcgcaataattttattgtgagctatgtcaggaggcaaacaaatagggtagcttataacatagctagagttac 43427519  T
Q  207 cttatctcaccctaacctccatattttttatgaagtaccatctata-ttgtacccgctattttttaacgaaatgaattagtt 287  Q
    ||||||||||||||||||  |||||||| ||||||||||||||| | ||||||| | |||| |||||  |||||||||||||    
T  43427520 cttatctcaccctaacct-aatatttttcatgaagtaccatctacatttgtacctgttattatttaataaaatgaattagtt 43427600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 726 - 802
Target Start/End: Original strand, 25504712 - 25504788
Alignment:
Q  726 atacttgattgggttcggtacctttgagtgttcgttttcgtgggttgtttgagctttatgaaaataaatctgttaca 802  Q
    ||||||| ||||| ||| |||||||| |||||||||| ||| ||||||||||||||| ||||||||||| |||||||    
T  25504712 atacttggttggggtcgttacctttgtgtgttcgtttccgtaggttgtttgagctttttgaaaataaatatgttaca 25504788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 853 - 909
Target Start/End: Complemental strand, 11711312 - 11711258
Alignment:
Q  853 ggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggtttgatccctg 909  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||| ||||||    
T  11711312 ggctaaaatatgtttttggtccctgc--aaatatagcgaatttgggtttggtccctg 11711258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 173 - 250
Target Start/End: Original strand, 49508567 - 49508644
Alignment:
Q  173 caaataaggtagctgataacatagctaaaagttccttatctcaccctaacctccatattttttatgaagtaccatcta 250  Q
    |||||||||||||| |||||||||||| |  ||||||||| ||||||| || ||||||||| ||||| ||||||||||    
T  49508567 caaataaggtagctcataacatagctagagcttccttatcccaccctagcccccatattttctatgatgtaccatcta 49508644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 846 - 901
Target Start/End: Original strand, 35721094 - 35721147
Alignment:
Q  846 aattttaggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttt 901  Q
    |||| ||||||||||||||||||||||||||||  ||||||| |||||||||||||    
T  35721094 aattataggctaaaatatgtttttggtccctgc--aaatataacgaatttgggttt 35721147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 250
Target Start/End: Complemental strand, 8771312 - 8771233
Alignment:
Q  171 agcaaataaggtagctgataacatagctaaaagttccttatctcaccctaacctccatattttttatgaagtaccatcta 250  Q
    |||||||||||||||| |||||||||||| |  ||||||||| ||||||| || ||||||||| | ||| ||||| ||||    
T  8771312 agcaaataaggtagctcataacatagctagagtttccttatcccaccctagcccccatattttctctgatgtaccgtcta 8771233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 852 - 901
Target Start/End: Complemental strand, 20723748 - 20723701
Alignment:
Q  852 aggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttt 901  Q
    |||||||||||||||||||||||||||  |||||||||||||||| ||||    
T  20723748 aggctaaaatatgtttttggtccctgc--aaatatagcgaatttgagttt 20723701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 852 - 901
Target Start/End: Original strand, 37395632 - 37395679
Alignment:
Q  852 aggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttt 901  Q
    |||||||||||||||||||||||||||  |||||||||| ||||||||||    
T  37395632 aggctaaaatatgtttttggtccctgc--aaatatagcgtatttgggttt 37395679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 852 - 901
Target Start/End: Complemental strand, 45979556 - 45979509
Alignment:
Q  852 aggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttt 901  Q
    |||||||||||||||||||||||||||  |||||||||||||||| ||||    
T  45979556 aggctaaaatatgtttttggtccctgc--aaatatagcgaatttgagttt 45979509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 841 - 901
Target Start/End: Complemental strand, 27264287 - 27264229
Alignment:
Q  841 tcattaattttaggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttt 901  Q
    |||||| || |||||||||||||| |||||||||||||  ||||||||||| |||||||||    
T  27264287 tcattatttataggctaaaatatgattttggtccctgc--aaatatagcgagtttgggttt 27264229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 849 - 901
Target Start/End: Complemental strand, 34934810 - 34934760
Alignment:
Q  849 tttaggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttt 901  Q
    |||||||||||||||| |||| ||||||||  |||||||||||||||||||||    
T  34934810 tttaggctaaaatatgctttttgtccctgc--aaatatagcgaatttgggttt 34934760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 849 - 897
Target Start/End: Complemental strand, 35722348 - 35722302
Alignment:
Q  849 tttaggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgg 897  Q
    |||||||||||||||||||||||||||||   |||||||||||||||||    
T  35722348 tttaggctaaaatatgtttttggtccctg--taaatatagcgaatttgg 35722302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 842 - 881
Target Start/End: Original strand, 15516571 - 15516610
Alignment:
Q  842 cattaattttaggctaaaatatgtttttggtccctgcaaa 881  Q
    |||| |||||||||||||||||| ||||||||||||||||    
T  15516571 cattgattttaggctaaaatatggttttggtccctgcaaa 15516610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 847 - 901
Target Start/End: Original strand, 26863854 - 26863906
Alignment:
Q  847 attttaggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttt 901  Q
    |||| |||||||||| ||||||||||||||||  |||||||||||||||| ||||    
T  26863854 atttaaggctaaaatgtgtttttggtccctgc--aaatatagcgaatttgagttt 26863906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 855 - 912
Target Start/End: Original strand, 51240121 - 51240177
Alignment:
Q  855 ctaaaatatgtttttggtccctgcaaaaatatagcgaatttgg-gtttgatccctgata 912  Q
    ||||||||||||||||||| ||||  |||||||||||||||||  ||||||||||||||    
T  51240121 ctaaaatatgtttttggtctctgc--aaatatagcgaatttggattttgatccctgata 51240177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 852 - 901
Target Start/End: Complemental strand, 9774948 - 9774901
Alignment:
Q  852 aggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttt 901  Q
    ||||||||||||| |||||||||||||  ||||||||||| |||||||||    
T  9774948 aggctaaaatatgcttttggtccctgc--aaatatagcgagtttgggttt 9774901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 852 - 901
Target Start/End: Complemental strand, 17977619 - 17977572
Alignment:
Q  852 aggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttt 901  Q
    ||||| ||||||| |||||||||||||  |||||||||||||||||||||    
T  17977619 aggcttaaatatggttttggtccctgc--aaatatagcgaatttgggttt 17977572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 853 - 909
Target Start/End: Complemental strand, 23470028 - 23469973
Alignment:
Q  853 ggctaaaatatgtttttggtccctgcaaaaatatagcgaattt-gggtttgatccctg 909  Q
    ||||||||||||||||||||||||||  ||||||||||| ||| || |||||||||||    
T  23470028 ggctaaaatatgtttttggtccctgc--aaatatagcgagtttcggttttgatccctg 23469973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 852 - 901
Target Start/End: Original strand, 27262907 - 27262954
Alignment:
Q  852 aggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttt 901  Q
    |||||||||||||||||||||||||||  ||||||||||| |||| ||||    
T  27262907 aggctaaaatatgtttttggtccctgc--aaatatagcgagtttgtgttt 27262954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 852 - 897
Target Start/End: Complemental strand, 35911948 - 35911905
Alignment:
Q  852 aggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgg 897  Q
    ||||||||||||| |||||||||||||  |||||||||||||||||    
T  35911948 aggctaaaatatgcttttggtccctgc--aaatatagcgaatttgg 35911905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 852 - 912
Target Start/End: Complemental strand, 48594108 - 48594049
Alignment:
Q  852 aggctaaaatatgtttttggtccctgcaaaaatatagcgaatttggg-tttgatccctgata 912  Q
    ||||||||||||||||||||||||||   |||||| |||| |||||| ||||||||||||||    
T  48594108 aggctaaaatatgtttttggtccctg--taaatatggcgagtttgggttttgatccctgata 48594049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 852 - 912
Target Start/End: Complemental strand, 48598719 - 48598660
Alignment:
Q  852 aggctaaaatatgtttttggtccctgcaaaaatatagcgaatttggg-tttgatccctgata 912  Q
    ||||||||||||||||||||||||||   |||||| |||| |||||| ||||||||||||||    
T  48598719 aggctaaaatatgtttttggtccctg--taaatatggcgagtttgggttttgatccctgata 48598660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 848 - 881
Target Start/End: Complemental strand, 2604191 - 2604158
Alignment:
Q  848 ttttaggctaaaatatgtttttggtccctgcaaa 881  Q
    |||||||||||||||||||||| |||||||||||    
T  2604191 ttttaggctaaaatatgtttttagtccctgcaaa 2604158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 848 - 881
Target Start/End: Original strand, 10887228 - 10887261
Alignment:
Q  848 ttttaggctaaaatatgtttttggtccctgcaaa 881  Q
    ||||||||||||||||| ||||||||||||||||    
T  10887228 ttttaggctaaaatatggttttggtccctgcaaa 10887261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 853 - 901
Target Start/End: Original strand, 20722472 - 20722518
Alignment:
Q  853 ggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttt 901  Q
    ||||||||| || |||||||||||||  |||||||||||||||||||||    
T  20722472 ggctaaaatgtgcttttggtccctgc--aaatatagcgaatttgggttt 20722518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 853 - 901
Target Start/End: Original strand, 24609919 - 24609965
Alignment:
Q  853 ggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttt 901  Q
    ||||||||||||||||||||||||||  |||||| |||| |||||||||    
T  24609919 ggctaaaatatgtttttggtccctgc--aaatatggcgagtttgggttt 24609965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 853 - 901
Target Start/End: Complemental strand, 37396899 - 37396853
Alignment:
Q  853 ggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttt 901  Q
    |||||||||||| |||||||||||||  |||||||||||||||| ||||    
T  37396899 ggctaaaatatgcttttggtccctgc--aaatatagcgaatttgagttt 37396853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 250
Target Start/End: Original strand, 45432822 - 45432899
Alignment:
Q  173 caaataaggtagctgataacatagctaaaagttccttatctcaccctaacctccatattttttatgaagtaccatcta 250  Q
    |||||||||||||| |||||||||||| |  ||||||||| ||||||| || || |||||| | ||| ||||| ||||    
T  45432822 caaataaggtagctcataacatagctagagcttccttatcccaccctagcccccgtattttctctgatgtaccgtcta 45432899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 853 - 901
Target Start/End: Complemental strand, 46075109 - 46075063
Alignment:
Q  853 ggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttt 901  Q
    |||||||||||||||||| |||||||  ||||||||||| |||||||||    
T  46075109 ggctaaaatatgtttttgatccctgc--aaatatagcgagtttgggttt 46075063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 2e-27; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 88 - 249
Target Start/End: Original strand, 19671160 - 19671309
Alignment:
Q  88 aatgagttcggtgatatcatttctagatgtaagggtctattgtcgtctcgcaataattttattttgagctatataagaagactagcaaataaggtagctg 187  Q
    ||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||| |           ||||||||||||||     
T  19671160 aatgagttcggagatatcatttctagatgtaaggatctattgtcatctcgcaataattttattatgagctatgt-----------caaataaggtagctt 19671248  T
Q  188 ataacatagctaaaagttccttatctcaccctaacctccatattttttatgaagtaccatct 249  Q
    |||||||||||| |  ||||||||| ||||||| || |||||||||| |||| |||||||||    
T  19671249 ataacatagctagagcttccttatcccaccctagcc-ccatatttttcatgatgtaccatct 19671309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 843 - 901
Target Start/End: Original strand, 53121292 - 53121348
Alignment:
Q  843 attaattttaggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttt 901  Q
    |||||||| |||||||||||||||||||||||||||  ||||||||||| |||||||||    
T  53121292 attaatttaaggctaaaatatgtttttggtccctgc--aaatatagcgagtttgggttt 53121348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 851 - 901
Target Start/End: Complemental strand, 54437528 - 54437480
Alignment:
Q  851 taggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttt 901  Q
    ||||||||||||||||||||||||||||  |||||||||||||||| ||||    
T  54437528 taggctaaaatatgtttttggtccctgc--aaatatagcgaatttgagttt 54437480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 848 - 897
Target Start/End: Original strand, 46026071 - 46026118
Alignment:
Q  848 ttttaggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgg 897  Q
    |||||||||||||||||||||||||||||||  ||||||||||| |||||    
T  46026071 ttttaggctaaaatatgtttttggtccctgc--aaatatagcgagtttgg 46026118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 844 - 901
Target Start/End: Complemental strand, 52403192 - 52403137
Alignment:
Q  844 ttaattttaggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttt 901  Q
    ||||||||||||||||||||| |||||||||||||  |||||| |||| |||||||||    
T  52403192 ttaattttaggctaaaatatgcttttggtccctgc--aaatatggcgagtttgggttt 52403137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 842 - 897
Target Start/End: Complemental strand, 20585714 - 20585661
Alignment:
Q  842 cattaattttaggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgg 897  Q
    ||||| ||||||||||||||||||||||| |||||||  ||||||||||| |||||    
T  20585714 cattatttttaggctaaaatatgtttttgatccctgc--aaatatagcgagtttgg 20585661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 850 - 901
Target Start/End: Complemental strand, 47433871 - 47433822
Alignment:
Q  850 ttaggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttt 901  Q
    ||||||||||||||| |||||||||||||  |||||||||||||||| ||||    
T  47433871 ttaggctaaaatatggttttggtccctgc--aaatatagcgaatttgagttt 47433822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 851 - 901
Target Start/End: Complemental strand, 39820665 - 39820617
Alignment:
Q  851 taggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttt 901  Q
    |||||||||||||| |||||||||||||  ||||||||||| |||||||||    
T  39820665 taggctaaaatatggttttggtccctgc--aaatatagcgagtttgggttt 39820617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 846 - 881
Target Start/End: Original strand, 52342188 - 52342223
Alignment:
Q  846 aattttaggctaaaatatgtttttggtccctgcaaa 881  Q
    ||||||||||||||||||| ||||||||||||||||    
T  52342188 aattttaggctaaaatatggttttggtccctgcaaa 52342223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 839 - 881
Target Start/End: Original strand, 26089716 - 26089758
Alignment:
Q  839 tatcattaattttaggctaaaatatgtttttggtccctgcaaa 881  Q
    ||||| ||||||| |||||||||||| ||||||||||||||||    
T  26089716 tatcaataatttttggctaaaatatggttttggtccctgcaaa 26089758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 847 - 881
Target Start/End: Original strand, 30128278 - 30128312
Alignment:
Q  847 attttaggctaaaatatgtttttggtccctgcaaa 881  Q
    |||||||||||||||||| ||||||||||||||||    
T  30128278 attttaggctaaaatatggttttggtccctgcaaa 30128312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 843 - 877
Target Start/End: Original strand, 50998874 - 50998908
Alignment:
Q  843 attaattttaggctaaaatatgtttttggtccctg 877  Q
    ||||||||| |||||||||||||||||||||||||    
T  50998874 attaatttttggctaaaatatgtttttggtccctg 50998908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 852 - 901
Target Start/End: Original strand, 52401016 - 52401063
Alignment:
Q  852 aggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttt 901  Q
    |||||||||||||||||||||||||||  |||||| |||| |||||||||    
T  52401016 aggctaaaatatgtttttggtccctgc--aaatatggcgagtttgggttt 52401063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 848 - 881
Target Start/End: Original strand, 12740902 - 12740935
Alignment:
Q  848 ttttaggctaaaatatgtttttggtccctgcaaa 881  Q
    ||||||||||||||||| ||||||||||||||||    
T  12740902 ttttaggctaaaatatggttttggtccctgcaaa 12740935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 848 - 881
Target Start/End: Complemental strand, 39132911 - 39132878
Alignment:
Q  848 ttttaggctaaaatatgtttttggtccctgcaaa 881  Q
    ||||||||||||||||| ||||||||||||||||    
T  39132911 ttttaggctaaaatatggttttggtccctgcaaa 39132878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 848 - 881
Target Start/End: Original strand, 40545559 - 40545592
Alignment:
Q  848 ttttaggctaaaatatgtttttggtccctgcaaa 881  Q
    ||||||||||||||||| ||||||||||||||||    
T  40545559 ttttaggctaaaatatggttttggtccctgcaaa 40545592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 848 - 881
Target Start/End: Complemental strand, 47005524 - 47005491
Alignment:
Q  848 ttttaggctaaaatatgtttttggtccctgcaaa 881  Q
    ||||||||||||||||| ||||||||||||||||    
T  47005524 ttttaggctaaaatatggttttggtccctgcaaa 47005491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 848 - 881
Target Start/End: Complemental strand, 51550451 - 51550418
Alignment:
Q  848 ttttaggctaaaatatgtttttggtccctgcaaa 881  Q
    ||||||||||||||||| ||||||||||||||||    
T  51550451 ttttaggctaaaatatggttttggtccctgcaaa 51550418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 853 - 901
Target Start/End: Complemental strand, 52708676 - 52708630
Alignment:
Q  853 ggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttt 901  Q
    |||||||||||| |||||||||||||  ||||||||||| |||||||||    
T  52708676 ggctaaaatatgcttttggtccctgc--aaatatagcgagtttgggttt 52708630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 7e-21; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 726 - 802
Target Start/End: Original strand, 22094969 - 22095045
Alignment:
Q  726 atacttgattgggttcggtacctttgagtgttcgttttcgtgggttgtttgagctttatgaaaataaatctgttaca 802  Q
    ||||||| ||||||||||| |||||  |||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  22094969 atacttggttgggttcggtccctttttgtgttcgttttcgtaggttgtttgagctttatgaaaataaatatgttaca 22095045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 850 - 901
Target Start/End: Original strand, 31540493 - 31540542
Alignment:
Q  850 ttaggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttt 901  Q
    |||||||||||||||||||||||||||||  ||||||| |||||||||||||    
T  31540493 ttaggctaaaatatgtttttggtccctgc--aaatataacgaatttgggttt 31540542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 852 - 901
Target Start/End: Original strand, 3936577 - 3936624
Alignment:
Q  852 aggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttt 901  Q
    |||||||||||||||||||||||||||  ||||||||||| |||||||||    
T  3936577 aggctaaaatatgtttttggtccctgc--aaatatagcgagtttgggttt 3936624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 850 - 901
Target Start/End: Original strand, 3954049 - 3954098
Alignment:
Q  850 ttaggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttt 901  Q
    ||||||||||||||||||||||||| |||  ||||||| |||||||||||||    
T  3954049 ttaggctaaaatatgtttttggtccttgc--aaatatatcgaatttgggttt 3954098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 852 - 909
Target Start/End: Complemental strand, 27571189 - 27571133
Alignment:
Q  852 aggctaaaatatgtttttggtccctgcaaaaatatagcgaatttggg-tttgatccctg 909  Q
    ||||||||||||| |||||||||||||  ||||||||||| |||||| |||||||||||    
T  27571189 aggctaaaatatgattttggtccctgc--aaatatagcgagtttgggttttgatccctg 27571133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 848 - 901
Target Start/End: Original strand, 4565388 - 4565439
Alignment:
Q  848 ttttaggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttt 901  Q
    |||||||||||||||||||||| ||||||  | ||||||||||| |||||||||    
T  4565388 ttttaggctaaaatatgtttttagtccct--acaaatatagcgagtttgggttt 4565439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 843 - 881
Target Start/End: Original strand, 5917116 - 5917154
Alignment:
Q  843 attaattttaggctaaaatatgtttttggtccctgcaaa 881  Q
    ||||||| |||||||||||||| ||||||||||||||||    
T  5917116 attaattataggctaaaatatggttttggtccctgcaaa 5917154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 847 - 881
Target Start/End: Complemental strand, 19565837 - 19565803
Alignment:
Q  847 attttaggctaaaatatgtttttggtccctgcaaa 881  Q
    |||||||||||||||||| ||||||||||||||||    
T  19565837 attttaggctaaaatatggttttggtccctgcaaa 19565803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 847 - 881
Target Start/End: Complemental strand, 35877058 - 35877024
Alignment:
Q  847 attttaggctaaaatatgtttttggtccctgcaaa 881  Q
    |||||||||||||||||| ||||||||||||||||    
T  35877058 attttaggctaaaatatggttttggtccctgcaaa 35877024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 840 - 881
Target Start/End: Complemental strand, 29875738 - 29875697
Alignment:
Q  840 atcattaattttaggctaaaatatgtttttggtccctgcaaa 881  Q
    ||||||| ||||||||||||||||| |||| |||||||||||    
T  29875738 atcattatttttaggctaaaatatggttttagtccctgcaaa 29875697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 2e-18; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 726 - 802
Target Start/End: Original strand, 503251 - 503327
Alignment:
Q  726 atacttgattgggttcggtacctttgagtgttcgttttcgtgggttgtttgagctttatgaaaataaatctgttaca 802  Q
    ||||||| ||||| ||| |||||||| |||||||||||||| ||||||||||||||| ||||||||||| |||||||    
T  503251 atacttggttggggtcgatacctttgtgtgttcgttttcgtaggttgtttgagctttttgaaaataaatatgttaca 503327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 726 - 802
Target Start/End: Complemental strand, 8264644 - 8264568
Alignment:
Q  726 atacttgattgggttcggtacctttgagtgttcgttttcgtgggttgtttgagctttatgaaaataaatctgttaca 802  Q
    ||||||| ||||| ||  |||||||| |||||||||||||| ||||||||||||||| ||||||||||| |||||||    
T  8264644 atacttggttggggtcaatacctttgtgtgttcgttttcgtaggttgtttgagctttttgaaaataaatatgttaca 8264568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 726 - 802
Target Start/End: Original strand, 5085745 - 5085821
Alignment:
Q  726 atacttgattgggttcggtacctttgagtgttcgttttcgtgggttgtttgagctttatgaaaataaatctgttaca 802  Q
    ||||||| ||||| ||||| | |||| |||| ||||||||| ||||||||||||||||||| ||||||| |||||||    
T  5085745 atacttggttgggatcggttcttttgtgtgtacgttttcgtaggttgtttgagctttatgagaataaatatgttaca 5085821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 849 - 897
Target Start/End: Original strand, 3276363 - 3276409
Alignment:
Q  849 tttaggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgg 897  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||    
T  3276363 tttaggctaaaatatgtttttggtccctgc--aaatatagcgaatttgg 3276409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 848 - 901
Target Start/End: Original strand, 1972395 - 1972446
Alignment:
Q  848 ttttaggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttt 901  Q
    |||| ||||||||||||||||||||||||||  ||||| |||||||||||||||    
T  1972395 tttttggctaaaatatgtttttggtccctgc--aaataaagcgaatttgggttt 1972446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 844 - 881
Target Start/End: Original strand, 6412209 - 6412246
Alignment:
Q  844 ttaattttaggctaaaatatgtttttggtccctgcaaa 881  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  6412209 ttaattttaggctaaaatatggttttggtccctgcaaa 6412246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 848 - 881
Target Start/End: Complemental strand, 17517373 - 17517340
Alignment:
Q  848 ttttaggctaaaatatgtttttggtccctgcaaa 881  Q
    ||||||||||||||||||||||||||||||||||    
T  17517373 ttttaggctaaaatatgtttttggtccctgcaaa 17517340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 850 - 897
Target Start/End: Original strand, 21953203 - 21953248
Alignment:
Q  850 ttaggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgg 897  Q
    ||||||||||||||| |||||||||||||  |||||||||||||||||    
T  21953203 ttaggctaaaatatgcttttggtccctgc--aaatatagcgaatttgg 21953248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 855 - 901
Target Start/End: Original strand, 20895960 - 20896004
Alignment:
Q  855 ctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttt 901  Q
    ||||||||||||||||||||||||  |||||||||||||||| ||||    
T  20895960 ctaaaatatgtttttggtccctgc--aaatatagcgaatttgagttt 20896004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 852 - 901
Target Start/End: Original strand, 16995450 - 16995497
Alignment:
Q  852 aggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttt 901  Q
    |||||||||||||||||||||||||||  |||||||  ||||||||||||    
T  16995450 aggctaaaatatgtttttggtccctgc--aaatataaagaatttgggttt 16995497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 847 - 881
Target Start/End: Complemental strand, 19129526 - 19129492
Alignment:
Q  847 attttaggctaaaatatgtttttggtccctgcaaa 881  Q
    |||||||||||||||||| ||||||||||||||||    
T  19129526 attttaggctaaaatatgattttggtccctgcaaa 19129492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 847 - 881
Target Start/End: Complemental strand, 19321137 - 19321103
Alignment:
Q  847 attttaggctaaaatatgtttttggtccctgcaaa 881  Q
    |||||||||||||||||| ||||||||||||||||    
T  19321137 attttaggctaaaatatggttttggtccctgcaaa 19321103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 848 - 881
Target Start/End: Original strand, 1007119 - 1007152
Alignment:
Q  848 ttttaggctaaaatatgtttttggtccctgcaaa 881  Q
    ||||||||||||||||| ||||||||||||||||    
T  1007119 ttttaggctaaaatatggttttggtccctgcaaa 1007152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 726 - 799
Target Start/End: Complemental strand, 19256061 - 19255988
Alignment:
Q  726 atacttgattgggttcggtacctttgagtgttcgttttcgtgggttgtttgagctttatgaaaataaatctgtt 799  Q
    ||||||| ||||| ||| | |||||| |||||||||| ||| ||||||||||||||| ||  ||||||| ||||    
T  19256061 atacttggttggggtcgattcctttgtgtgttcgtttccgtaggttgtttgagctttttgttaataaatatgtt 19255988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 853 - 901
Target Start/End: Complemental strand, 20393327 - 20393281
Alignment:
Q  853 ggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttt 901  Q
    |||||||||||| ||||| ||||||||||  ||||||||||||||||||    
T  20393327 ggctaaaatatgcttttgatccctgcaaa--tatagcgaatttgggttt 20393281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 853 - 901
Target Start/End: Complemental strand, 20897556 - 20897510
Alignment:
Q  853 ggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttt 901  Q
    |||||||||||| |||||||||||||  |||||||| ||||||||||||    
T  20897556 ggctaaaatatggttttggtccctgc--aaatatagtgaatttgggttt 20897510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 726 - 799
Target Start/End: Complemental strand, 33640339 - 33640266
Alignment:
Q  726 atacttgattgggttcggtacctttgagtgttcgttttcgtgggttgtttgagctttatgaaaataaatctgtt 799  Q
    ||||||| ||||| ||| | |||||| |||||||||| ||| ||||||||||||||| ||  ||||||| ||||    
T  33640339 atacttggttggggtcgattcctttgtgtgttcgtttccgtaggttgtttgagctttttgttaataaatatgtt 33640266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 3e-17; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 726 - 800
Target Start/End: Complemental strand, 8935494 - 8935420
Alignment:
Q  726 atacttgattgggttcggtacctttgagtgttcgttttcgtgggttgtttgagctttatgaaaataaatctgtta 800  Q
    ||||||| ||||| ||| |||||||| |||||||||||||| ||||||||||||||| ||||||||||| |||||    
T  8935494 atacttggttggggtcgatacctttgtgtgttcgttttcgtaggttgtttgagctttttgaaaataaatatgtta 8935420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 726 - 802
Target Start/End: Complemental strand, 19114857 - 19114781
Alignment:
Q  726 atacttgattgggttcggtacctttgagtgttcgttttcgtgggttgtttgagctttatgaaaataaatctgttaca 802  Q
    ||||||| ||||| ||||| |||||| |||||||||||||| |||| |||||||||||||| ||||||| |||||||    
T  19114857 atacttggttgggatcggttcctttgtgtgttcgttttcgtaggttatttgagctttatgagaataaatatgttaca 19114781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 726 - 802
Target Start/End: Original strand, 49925985 - 49926061
Alignment:
Q  726 atacttgattgggttcggtacctttgagtgttcgttttcgtgggttgtttgagctttatgaaaataaatctgttaca 802  Q
    ||||||| ||||| ||| |||||||| |||||||||| ||| ||||||||||||||| ||||||||||| |||||||    
T  49925985 atacttggttggggtcgttacctttgtgtgttcgtttccgtaggttgtttgagctttttgaaaataaatatgttaca 49926061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 726 - 799
Target Start/End: Complemental strand, 19648130 - 19648057
Alignment:
Q  726 atacttgattgggttcggtacctttgagtgttcgttttcgtgggttgtttgagctttatgaaaataaatctgtt 799  Q
    ||||||| ||||| |||||||||||| |||||||||| ||| ||||||||||||||| ||| ||||||| ||||    
T  19648130 atacttggttggggtcggtacctttgtgtgttcgtttccgtaggttgtttgagctttttgataataaatatgtt 19648057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 853 - 901
Target Start/End: Original strand, 22204055 - 22204101
Alignment:
Q  853 ggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttt 901  Q
    ||||||||||||||||||||||||||  ||||||||||| |||||||||    
T  22204055 ggctaaaatatgtttttggtccctgc--aaatatagcgagtttgggttt 22204101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 501 - 545
Target Start/End: Complemental strand, 49805880 - 49805836
Alignment:
Q  501 tatagaatgacctaaaaagtaatcaatataaatcttgttaagaaa 545  Q
    |||||||| |||||||||||||||||  |||||||||||||||||    
T  49805880 tatagaataacctaaaaagtaatcaacttaaatcttgttaagaaa 49805836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 846 - 881
Target Start/End: Original strand, 42823769 - 42823804
Alignment:
Q  846 aattttaggctaaaatatgtttttggtccctgcaaa 881  Q
    ||||||||||||||||||| ||||||||||||||||    
T  42823769 aattttaggctaaaatatgattttggtccctgcaaa 42823804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 852 - 901
Target Start/End: Complemental strand, 3880556 - 3880509
Alignment:
Q  852 aggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttt 901  Q
    ||||||||||||||||||||| |||||  ||||||||||| |||||||||    
T  3880556 aggctaaaatatgtttttggttcctgc--aaatatagcgagtttgggttt 3880509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 847 - 881
Target Start/End: Complemental strand, 13074131 - 13074097
Alignment:
Q  847 attttaggctaaaatatgtttttggtccctgcaaa 881  Q
    |||||||||||||||||| ||||||||||||||||    
T  13074131 attttaggctaaaatatggttttggtccctgcaaa 13074097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 768 - 802
Target Start/End: Complemental strand, 23657774 - 23657740
Alignment:
Q  768 ggttgtttgagctttatgaaaataaatctgttaca 802  Q
    |||||||||||||||||||||||||||| ||||||    
T  23657774 ggttgtttgagctttatgaaaataaatcagttaca 23657740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 852 - 901
Target Start/End: Complemental strand, 33137288 - 33137241
Alignment:
Q  852 aggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttt 901  Q
    ||||||||||||||||||| |||||||  ||||||||||| |||||||||    
T  33137288 aggctaaaatatgtttttgatccctgc--aaatatagcgagtttgggttt 33137241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 848 - 897
Target Start/End: Complemental strand, 42359410 - 42359363
Alignment:
Q  848 ttttaggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgg 897  Q
    |||| ||||||||||||||||||||||||||  ||||||||||| |||||    
T  42359410 tttttggctaaaatatgtttttggtccctgc--aaatatagcgagtttgg 42359363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 848 - 901
Target Start/End: Complemental strand, 45619795 - 45619744
Alignment:
Q  848 ttttaggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttt 901  Q
    |||||||||||||||||||||| ||||||||  ||||||||||| ||| |||||    
T  45619795 ttttaggctaaaatatgtttttagtccctgc--aaatatagcgagtttaggttt 45619744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 852 - 881
Target Start/End: Complemental strand, 5259211 - 5259182
Alignment:
Q  852 aggctaaaatatgtttttggtccctgcaaa 881  Q
    ||||||||||||||||||||||||||||||    
T  5259211 aggctaaaatatgtttttggtccctgcaaa 5259182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 848 - 881
Target Start/End: Original strand, 14594201 - 14594234
Alignment:
Q  848 ttttaggctaaaatatgtttttggtccctgcaaa 881  Q
    ||||||||||||||||| ||||||||||||||||    
T  14594201 ttttaggctaaaatatggttttggtccctgcaaa 14594234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 853 - 901
Target Start/End: Complemental strand, 32699373 - 32699327
Alignment:
Q  853 ggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttt 901  Q
    |||||||||||||||||||||||||   ||||||||||| |||||||||    
T  32699373 ggctaaaatatgtttttggtccctg--taaatatagcgagtttgggttt 32699327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 848 - 881
Target Start/End: Original strand, 35464013 - 35464046
Alignment:
Q  848 ttttaggctaaaatatgtttttggtccctgcaaa 881  Q
    ||||||||||||||||| ||||||||||||||||    
T  35464013 ttttaggctaaaatatggttttggtccctgcaaa 35464046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 852 - 881
Target Start/End: Original strand, 42358031 - 42358060
Alignment:
Q  852 aggctaaaatatgtttttggtccctgcaaa 881  Q
    ||||||||||||||||||||||||||||||    
T  42358031 aggctaaaatatgtttttggtccctgcaaa 42358060  T

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Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 853 - 901
Target Start/End: Original strand, 44705299 - 44705345
Alignment:
Q  853 ggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttt 901  Q
    ||||||||||||||||||||| ||||  |||||||| ||||||||||||    
T  44705299 ggctaaaatatgtttttggtctctgc--aaatatagtgaatttgggttt 44705345  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 726 - 799
Target Start/End: Original strand, 4987784 - 4987857
Alignment:
Q  726 atacttgattgggttcggtacctttgagtgttcgttttcgtgggttgtttgagctttatgaaaataaatctgtt 799  Q
    ||||||| ||||| |||||||||||| |||||||||| ||| ||||||||||||||| ||| ||||||| ||||    
T  4987784 atacttggttggggtcggtacctttgtgtgttcgtttccgtaggttgtttgagctttttgataataaatatgtt 4987857  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 847 - 901
Target Start/End: Original strand, 10717115 - 10717167
Alignment:
Q  847 attttaggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttt 901  Q
    |||||||||||||||||| |||||||||||||  ||||||||||| |||||||||    
T  10717115 attttaggctaaaatatgcttttggtccctgc--aaatatagcgagtttgggttt 10717167  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 843 - 881
Target Start/End: Complemental strand, 28346768 - 28346730
Alignment:
Q  843 attaattttaggctaaaatatgtttttggtccctgcaaa 881  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  28346768 attaattttaggctaaaatatggttttggtccctgcaaa 28346730  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 848 - 901
Target Start/End: Complemental strand, 28998057 - 28998006
Alignment:
Q  848 ttttaggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttt 901  Q
    |||| ||||||||||||||||||||||||||  ||||||||||| |||||||||    
T  28998057 tttttggctaaaatatgtttttggtccctgc--aaatatagcgagtttgggttt 28998006  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 844 - 881
Target Start/End: Complemental strand, 11019866 - 11019829
Alignment:
Q  844 ttaattttaggctaaaatatgtttttggtccctgcaaa 881  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  11019866 ttaattttaggctaaaatatggttttggtccctgcaaa 11019829  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 846 - 901
Target Start/End: Original strand, 3483626 - 3483679
Alignment:
Q  846 aattttaggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttt 901  Q
    |||||||| ||||||||||||||||||||||||  ||||||||||| |||| ||||    
T  3483626 aattttagactaaaatatgtttttggtccctgc--aaatatagcgagtttgagttt 3483679  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 851 - 901
Target Start/End: Complemental strand, 10718509 - 10718461
Alignment:
Q  851 taggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttt 901  Q
    |||||||||||||| |||||||||||||  ||||||||||| |||||||||    
T  10718509 taggctaaaatatgcttttggtccctgc--aaatatagcgagtttgggttt 10718461  T

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Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 250
Target Start/End: Original strand, 13533485 - 13533563
Alignment:
Q  171 agcaaataaggtagctgataacatagctaaaagttccttatctcaccctaacctccatattttttatgaagtaccatcta 250  Q
    ||||||||||||| || ||||||||||||||  ||||||||| ||||||| || ||||||||| | ||| ||||| ||||    
T  13533485 agcaaataaggtaactcataacatagctaaagcttccttatcccaccctagcc-ccatattttctctgatgtaccgtcta 13533563  T

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Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 250
Target Start/End: Original strand, 13623025 - 13623103
Alignment:
Q  171 agcaaataaggtagctgataacatagctaaaagttccttatctcaccctaacctccatattttttatgaagtaccatcta 250  Q
    ||||||||||||| || ||||||||||||||  ||||||||| ||||||| || ||||||||| | ||| ||||| ||||    
T  13623025 agcaaataaggtaactcataacatagctaaagcttccttatcccaccctagcc-ccatattttctctgatgtaccgtcta 13623103  T

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Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 847 - 901
Target Start/End: Original strand, 38658475 - 38658527
Alignment:
Q  847 attttaggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttt 901  Q
    |||||||||||||||||| || |||||| |||  |||||||||||||||||||||    
T  38658475 attttaggctaaaatatgcttctggtccatgc--aaatatagcgaatttgggttt 38658527  T

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Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 852 - 901
Target Start/End: Complemental strand, 22272330 - 22272283
Alignment:
Q  852 aggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttt 901  Q
    ||||||||||||| |||||||||| ||  |||||||||||||||||||||    
T  22272330 aggctaaaatatgcttttggtccccgc--aaatatagcgaatttgggttt 22272283  T

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Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 852 - 901
Target Start/End: Original strand, 30123151 - 30123198
Alignment:
Q  852 aggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttt 901  Q
    ||||||||||||||||||||||| |  | |||||||||||||||||||||    
T  30123151 aggctaaaatatgtttttggtccat--acaaatatagcgaatttgggttt 30123198  T

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Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 853 - 897
Target Start/End: Complemental strand, 1420501 - 1420459
Alignment:
Q  853 ggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgg 897  Q
    ||||||||||||||||||||||||||  ||||||||||| |||||    
T  1420501 ggctaaaatatgtttttggtccctgc--aaatatagcgagtttgg 1420459  T

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Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 848 - 881
Target Start/End: Original strand, 10337114 - 10337147
Alignment:
Q  848 ttttaggctaaaatatgtttttggtccctgcaaa 881  Q
    ||||||||||||||||| ||||||||||||||||    
T  10337114 ttttaggctaaaatatggttttggtccctgcaaa 10337147  T

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Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 852 - 881
Target Start/End: Original strand, 14197824 - 14197853
Alignment:
Q  852 aggctaaaatatgtttttggtccctgcaaa 881  Q
    ||||||||||||||||||||||||||||||    
T  14197824 aggctaaaatatgtttttggtccctgcaaa 14197853  T

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Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 841 - 901
Target Start/End: Complemental strand, 41847251 - 41847193
Alignment:
Q  841 tcattaattttaggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttt 901  Q
    ||||| |||||||||||||||||| |||| ||| ||||  |||||||||||||||| ||||    
T  41847251 tcattcattttaggctaaaatatgcttttagtctctgc--aaatatagcgaatttgagttt 41847193  T

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Target: scaffold0002 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 850 - 901
Target Start/End: Complemental strand, 345959 - 345910
Alignment:
Q  850 ttaggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttt 901  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  345959 ttaggctaaaatatgtttttggtccctgc--aaatatagcgaatttgggttt 345910  T

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Target: scaffold0002; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 847 - 901
Target Start/End: Complemental strand, 376434 - 376382
Alignment:
Q  847 attttaggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttt 901  Q
    |||||||||||||||||| |||||||||||||  ||||||||||| |||||||||    
T  376434 attttaggctaaaatatgcttttggtccctgc--aaatatagcgagtttgggttt 376382  T

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Target: scaffold0839 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0839
Description:

Target: scaffold0839; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 161 - 250
Target Start/End: Complemental strand, 4702 - 4613
Alignment:
Q  161 taagaagactagcaaataaggtagctgataacatagctaaaagttccttatctcaccctaacctccatattttttatgaagtaccatcta 250  Q
    |||| |||| |||||||||| ||||| |||||||||||| |  ||||||||| |||||||||| ||||||||| | ||| ||||| ||||    
T  4702 taaggagacaagcaaataagttagctcataacatagctagagcttccttatcccaccctaacccccatattttctctgatgtaccgtcta 4613  T

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Target: scaffold0517 (Bit Score: 35; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 852 - 901
Target Start/End: Complemental strand, 11582 - 11535
Alignment:
Q  852 aggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttt 901  Q
    |||||||||||||||||||||||||||  |||||||||| ||||||||||    
T  11582 aggctaaaatatgtttttggtccctgc--aaatatagcgtatttgggttt 11535  T

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Target: scaffold0517; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 853 - 901
Target Start/End: Original strand, 10315 - 10361
Alignment:
Q  853 ggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttt 901  Q
    |||||||||||| |||||||||||||  |||||||||||||||| ||||    
T  10315 ggctaaaatatgcttttggtccctgc--aaatatagcgaatttgagttt 10361  T

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Target: scaffold0010 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 250
Target Start/End: Complemental strand, 236712 - 236634
Alignment:
Q  171 agcaaataaggtagctgataacatagctaaaagttccttatctcaccctaacctccatattttttatgaagtaccatcta 250  Q
    |||||||||||||||| |||||||||||| |  ||||||||| || |||| || ||||||||| ||||| ||||| ||||    
T  236712 agcaaataaggtagctcataacatagctagagcttccttatccca-cctagcccccatattttctatgatgtaccgtcta 236634  T

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Target: scaffold0684 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0684
Description:

Target: scaffold0684; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 848 - 881
Target Start/End: Complemental strand, 2665 - 2632
Alignment:
Q  848 ttttaggctaaaatatgtttttggtccctgcaaa 881  Q
    ||||||||||||||||| ||||||||||||||||    
T  2665 ttttaggctaaaatatggttttggtccctgcaaa 2632  T

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Target: scaffold0005 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 848 - 881
Target Start/End: Complemental strand, 223177 - 223144
Alignment:
Q  848 ttttaggctaaaatatgtttttggtccctgcaaa 881  Q
    ||||||||||||||||| ||||||||||||||||    
T  223177 ttttaggctaaaatatggttttggtccctgcaaa 223144  T

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Target: scaffold0001 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 853 - 901
Target Start/End: Original strand, 119593 - 119639
Alignment:
Q  853 ggctaaaatatgtttttggtccctgcaaaaatatagcgaatttgggttt 901  Q
    |||||||||||| |||||||||||||  |||||||||||||||| ||||    
T  119593 ggctaaaatatgcttttggtccctgc--aaatatagcgaatttgagttt 119639  T

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