View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4436-Insertion-5 (Length: 1006)

Name: NF4436-Insertion-5
Description: NF4436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4436-Insertion-5
NF4436-Insertion-5
[»] chr8 (10 HSPs)
chr8 (212-906)||(3923683-3924387)
chr8 (708-834)||(3930426-3930552)
chr8 (838-911)||(3930576-3930649)
chr8 (59-110)||(4219859-4219909)
chr8 (8-44)||(3917668-3917704)
chr8 (910-973)||(3930703-3930766)
chr8 (910-947)||(4054551-4054588)
chr8 (658-722)||(3930153-3930217)
chr8 (86-117)||(3917713-3917744)
chr8 (917-973)||(3924448-3924504)
[»] chr2 (5 HSPs)
chr2 (253-313)||(14202065-14202125)
chr2 (262-321)||(7421245-7421304)
chr2 (65-109)||(13563484-13563529)
chr2 (258-315)||(13573961-13574018)
chr2 (65-109)||(13574327-13574372)


Alignment Details
Target: chr8 (Bit Score: 615; Significance: 0; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 615; E-Value: 0
Query Start/End: Original strand, 212 - 906
Target Start/End: Original strand, 3923683 - 3924387
Alignment:
Q  212 aattagggatacgtttgaggtttgaggttagtggtggacatatatgaaagatgcaggtgggtgaattctaattttcttcctaaatatgacataatggtat 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3923683 aattagggatacgtttgaggtttgaggttagtggtggacatatatgaaagatgcaggtgggtgaattctaattttcttcctaaatatgacataatggtat 3923782  T
Q  312 ttggatggttcctcatctatgcatttgcaattgtaattttgttatagatagagtgggaagtcacattgtaagaaatagagtttacgtgtggttgatgaag 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3923783 ttggatggttcctcatctatgcatttgcaattgtaattttgttatagatagagtgggaagtcacattgtaagaaatagagtttacgtgtggttgatgaag 3923882  T
Q  412 tttctacatgaaacttgctgtttttgtttggtttgggctcatcttaggactaaataatattttcag-tggaataaattaagtttggaagatttctcttca 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||     
T  3923883 tttctacatgaaacttgctgtttttgtttggtttgggctcatcttgggactaaataatattttctggtggaataaattaagtttggaagatttctcttct 3923982  T
Q  511 agccctttcattgtttataa-------gccctaaacaagttttaaaatatagaactttttgtttatgaatatgtaactctttcnnnnnnn--ggtggaat 601  Q
    ||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||    
T  3923983 agccctttcattgtttataaattataagccctaaacaagttttaaaatatagaactttttgtttatgaatatgtaactctttctttttttttggtggaat 3924082  T
Q  602 gaatatgtaacttttttcttatcaaacttagtaaacatatattattttcgctattagacctaaagtttgagttttattaaccttaccattcgatatacct 701  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  3924083 gaatatgtaacttttttcttatcaaacttactaaacatatattattttcgctattagacctaaagtttgagttttattaacattaccattcgatatacct 3924182  T
Q  702 tgatttaaatgtgaaaactgaaacatgtactgttggatacaagtcatatgcttgatcaacccgttgggattaactcagctttctttctctaattaatttt 801  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3924183 tgatttaaatgtgaaaactgaaacatgtactgttggatacaagtcatatgcttgatcaacccgttgggattaactcagctttctttctctaattaatttt 3924282  T
Q  802 tggtaaaaagtaattctcttaattaagatttatatatattatgtgttccgtttcaaacccattaatcactaaaaagtacataaaagaaattaatacaaac 901  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  3924283 tggtaaaaagtaattctcttaattaagatttatatatattatgtgttccgtttcaaacccattgatcactaaaaagtacataaaagaaattaatacaaac 3924382  T
Q  902 ccttt 906  Q
    |||||    
T  3924383 ccttt 3924387  T

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Target: chr8; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 708 - 834
Target Start/End: Original strand, 3930426 - 3930552
Alignment:
Q  708 aaatgtgaaaactgaaacatgtactgttggatacaagtcatatgcttgatcaacccgttgggattaactcagctttctttctctaattaatttttggtaa 807  Q
    |||||| ||||| |||||||||| ||||| ||||||  ||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||    
T  3930426 aaatgtaaaaaccgaaacatgtattgttgtatacaaaccatcttcttgatcaacccgtcgggattaactcagctttctttctctaattaatttttggcaa 3930525  T
Q  808 aaagtaattctcttaattaagatttat 834  Q
    |||||||||||||||||||||||||||    
T  3930526 aaagtaattctcttaattaagatttat 3930552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 838 - 911
Target Start/End: Original strand, 3930576 - 3930649
Alignment:
Q  838 tattatgtgttccgtttcaaacccattaatcactaaaaagtacataaaagaaattaatacaaaccctttgatca 911  Q
    ||||||||||| || | ||||||| || ||||| | |||||||||||||| |||||||||||||||||||||||    
T  3930576 tattatgtgtttcgatacaaaccctttgatcacaagaaagtacataaaagtaattaatacaaaccctttgatca 3930649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 59 - 110
Target Start/End: Complemental strand, 4219909 - 4219859
Alignment:
Q  59 atcaaatatttactacgtgtggtttgcttttatgattgtagtttaaggttga 110  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  4219909 atcaaatatttactacgtgtg-tttccttttatgattgtagtttaaggttga 4219859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 3917668 - 3917704
Alignment:
Q  8 aaatagtataaaaaatttgagtttgataaatgtgtga 44  Q
    |||||||||||||||||||||||||||||||||||||    
T  3917668 aaatagtataaaaaatttgagtttgataaatgtgtga 3917704  T

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Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 910 - 973
Target Start/End: Original strand, 3930703 - 3930766
Alignment:
Q  910 catatagcatggtaccataatacaaattcaaaacacactaaagata-tgtatattctagcttgac 973  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||| | ||||| ||||||||||    
T  3930703 catataacatggtaccataatacaaattcaaaacacac-aaagatattatatatcctagcttgac 3930766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 910 - 947
Target Start/End: Complemental strand, 4054588 - 4054551
Alignment:
Q  910 catatagcatggtaccataatacaaattcaaaacacac 947  Q
    |||||| |||||||||||||||||||||||||||||||    
T  4054588 catataacatggtaccataatacaaattcaaaacacac 4054551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 658 - 722
Target Start/End: Original strand, 3930153 - 3930217
Alignment:
Q  658 gacctaaagtttgagttttattaaccttaccattcgatataccttgatttaaatgtgaaaactga 722  Q
    |||||||||||||||||||| |||||||| | |||||||  |  |||||||||||| ||||||||    
T  3930153 gacctaaagtttgagttttagtaaccttatctttcgataggcactgatttaaatgtaaaaactga 3930217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 117
Target Start/End: Original strand, 3917713 - 3917744
Alignment:
Q  86 ttttatgattgtagtttaaggttgaccagctt 117  Q
    ||||||||||||||||||||||||||||||||    
T  3917713 ttttatgattgtagtttaaggttgaccagctt 3917744  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 917 - 973
Target Start/End: Original strand, 3924448 - 3924504
Alignment:
Q  917 catggtaccataatacaaattcaaaacacactaaagat-atgtatattctagcttgac 973  Q
    |||||||||||||||||||||||||| |||| |||||| || ||||| ||||||||||    
T  3924448 catggtaccataatacaaattcaaaatacac-aaagataatatatatcctagcttgac 3924504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 253 - 313
Target Start/End: Complemental strand, 14202125 - 14202065
Alignment:
Q  253 atatgaaagatgcaggtgggtgaattctaattttcttcctaaatatgacataatggtattt 313  Q
    |||| ||||||||  |||| |||||||||| |||||||||||||||||||| |||||||||    
T  14202125 atatcaaagatgctagtggttgaattctaaatttcttcctaaatatgacatcatggtattt 14202065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 262 - 321
Target Start/End: Complemental strand, 7421304 - 7421245
Alignment:
Q  262 atgcaggtgggtgaattctaattttcttcctaaatatgacataatggtatttggatggtt 321  Q
    |||| ||||| ||||||||||||||||||| |||||| |||| ||||||||||| |||||    
T  7421304 atgctggtggttgaattctaattttcttccaaaatatcacatcatggtatttgggtggtt 7421245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 109
Target Start/End: Complemental strand, 13563529 - 13563484
Alignment:
Q  65 tatttactacgtgtggtttgcttttatga-ttgtagtttaaggttg 109  Q
    ||||||||||||||||||| ||||| ||| ||||||||||||||||    
T  13563529 tatttactacgtgtggtttccttttttgatttgtagtttaaggttg 13563484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 315
Target Start/End: Complemental strand, 13574018 - 13573961
Alignment:
Q  258 aaagatgcaggtgggtgaattctaattttcttcctaaatatgacataatggtatttgg 315  Q
    |||||||| ||||| |||||||||||||||||||| ||||| | || ||| |||||||    
T  13574018 aaagatgctggtggttgaattctaattttcttccttaatataatatcatgctatttgg 13573961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 109
Target Start/End: Complemental strand, 13574372 - 13574327
Alignment:
Q  65 tatttactacgtgtggtttgcttttatgatt-gtagtttaaggttg 109  Q
    ||||||||||||||||||| ||||| ||||| ||||||||||||||    
T  13574372 tatttactacgtgtggtttccttttttgattcgtagtttaaggttg 13574327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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