View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4436-Insertion-6 (Length: 984)
Name: NF4436-Insertion-6
Description: NF4436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4436-Insertion-6 |
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| [»] scaffold1019 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 632; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 632; E-Value: 0
Query Start/End: Original strand, 255 - 973
Target Start/End: Complemental strand, 10514393 - 10513675
Alignment:
| Q |
255 |
gaatgcaatcatttttcatcaaagaagcaaatagtatcatctttgccagccatatatgtccctatattcatatgtatagtaaagtccagtaaacatttag |
354 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||| || ||||||||||| |
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| T |
10514393 |
gaatgcaatcatttttcatcaaagaagcaattagtatcatctttgc-agccatatatgtccctctattcatatgtatagtaaagtacaataaacatttag |
10514295 |
T |
|
| Q |
355 |
aatttgatctgataagtgattttttgagaaatctaaaagtttgatgagtatgtttgatcatcatgaactttgtacctaagtcaccatgagttaaactttc |
454 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
10514294 |
aatttgatctgataagtgattttttgagaaatctaaaagtttgatgagtatgtttgatcatcgtgaactttgtacctaagtcaccatgagttaaactttc |
10514195 |
T |
|
| Q |
455 |
aaattgcagatagaatcaaacttaaactttcaaattggaaggcaagtttgttatctatggcaggtagagtccagttggtgcaatctgttattcatagtat |
554 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
10514194 |
aaattgcagatagaatcaaacttaaactttcaaattggaaggcaagtttgttatctatggcaggtagagtccagttggtgcaatttgttattcatagtat |
10514095 |
T |
|
| Q |
555 |
gctaacctatagcatctctatttatgtctggcctgtttctcttctcaaagatcttgaaaaagagattaggaattttatttggagtggagacaaagacaaa |
654 |
Q |
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|||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||| |
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| T |
10514094 |
gctaacctatagtatctctatttatgcctggcctatttctcttctcaaagatcttgaaaaagagattaggaatttcatctagagtggagacaaagacaaa |
10513995 |
T |
|
| Q |
655 |
aggaaattaatttcagtctcttggaagaaggtgtgtagacattggaagcagggtggtttaaacttaagatccttcataagtttgaatcaagctaccaact |
754 |
Q |
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| T |
10513994 |
aggaaattaatttcagtctcttggaagaaggtgtgtagacattggaagcagggtggtttaaacttaagatccctcataagtttgaatcaagctaccaact |
10513895 |
T |
|
| Q |
755 |
tgaagctttgctggaatttgatcaactctcagaaaccttgtgcagctcttttgaaagatagagtcttgagaaacaacaaatctataaagcatcacatctt |
854 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10513894 |
tgaagctttgctggaatttgatcaactctcagaaaccttgggcaactcttttgaaggatagagtcttgagaaacaacaaatctataaagcatcacatctt |
10513795 |
T |
|
| Q |
855 |
ctcttctttttggagcagtataaaagaagagtactcttgcattcaatctaactccatttggttgttaggcgatggtaaggatattagcttctgg-atgac |
953 |
Q |
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||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
10513794 |
ctcttctttatggagcaatataaaagaagagtactcttgcattcaatctaactccatttggttgttaggcgatggtaaggatattagcttctggaatgac |
10513695 |
T |
|
| Q |
954 |
ccttggtttggccaatctct |
973 |
Q |
| |
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|||||||||||||||||||| |
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| T |
10513694 |
ccttggtttggccaatctct |
10513675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 8 - 233
Target Start/End: Complemental strand, 10515185 - 10514960
Alignment:
| Q |
8 |
ggaggtattgtgcatctccctcccaaatggtctgcagacatggtctacgtgcaatggcaaggaagatgtatcgtacgagcctctgggatatgattccaaa |
107 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
10515185 |
ggaggtattgtgcatctccctcccaaatggtctacagacatggtctgcgtgcaatggcaaggaagatgtatcgtacgagcctctgggatatgactccaaa |
10515086 |
T |
|
| Q |
108 |
gcctgttgtggatgtgcctattccttctcttcctcgaattcattcacctctagtggtgactcatgttatggctgagaggcttctctctcaactctgcatc |
207 |
Q |
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| T |
10515085 |
tcctgttgtggatgtgcctattccttctcttcctcgaattcattcacctctagtggtgactcatgttatggctgagaggcttcgctctcaactctgcatc |
10514986 |
T |
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| Q |
208 |
tcatcccaggttcctgcctaataaag |
233 |
Q |
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| T |
10514985 |
tcatcccaggttcctgcctaataaag |
10514960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1019 (Bit Score: 227; Significance: 1e-124; HSPs: 1)
Name: scaffold1019
Description:
Target: scaffold1019; HSP #1
Raw Score: 227; E-Value: 1e-124
Query Start/End: Original strand, 456 - 710
Target Start/End: Complemental strand, 255 - 1
Alignment:
| Q |
456 |
aattgcagatagaatcaaacttaaactttcaaattggaaggcaagtttgttatctatggcaggtagagtccagttggtgcaatctgttattcatagtatg |
555 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
255 |
aattgcagatagaatcaaacttaaactttcaaattggaaggcaagtttgttatctatggcaggtagagtccagttggtgcaatctgttattcatagtatg |
156 |
T |
|
| Q |
556 |
ctaacctatagcatctctatttatgtctggcctgtttctcttctcaaagatcttgaaaaagagattaggaattttatttggagtggagacaaagacaaaa |
655 |
Q |
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|||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||| || |||||| ||||||||||||||| |
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| T |
155 |
ttaacctatagcatctctatttatgcctggcctatttctcttctcaaagatcttgagaaagagattaggaatttcatctggagtagagacaaagacaaaa |
56 |
T |
|
| Q |
656 |
ggaaattaatttcagtctcttggaagaaggtgtgtagacattggaagcagggtgg |
710 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55 |
ggaaattaatttcagtctcttggaagaaggtgtgtagacattggaagcagggtgg |
1 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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