View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4436-Insertion-7 (Length: 814)

Name: NF4436-Insertion-7
Description: NF4436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4436-Insertion-7
NF4436-Insertion-7
[»] chr2 (3 HSPs)
chr2 (388-814)||(5279510-5279933)
chr2 (184-331)||(5279355-5279502)
chr2 (45-177)||(5279054-5279186)


Alignment Details
Target: chr2 (Bit Score: 373; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 388 - 814
Target Start/End: Original strand, 5279510 - 5279933
Alignment:
Q  388 taattattttttaatgaaacttatgaagtattaattaatattagtgcaattttccacattttttaatggccgcttccaacatagagttaggtagtagtaa 487  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |    
T  5279510 taattattttttaatgaaacttatgaagtattaattaatattagtgcaattttccacattttttaatggccgcttccaacatagagttaggtagta---a 5279606  T
Q  488 ttccttttttatatgatggcaaggacacgtttaattgatttcgataatctccacaaattatttctagctagttgaatattaaaacataatttagagaaca 587  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  5279607 ttcattttttatatgatggcaaggacacgtttaattgatttcgataatctccacaaattatttctagctagttgaatattaaaacagaatttagagaaca 5279706  T
Q  588 aaaaggctgatatactttttattagcaacagaaaggacaacattaattaaattaaattaaaccattaacaactttggaccatctctttccaagtctccga 687  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||    
T  5279707 aaaaggctgaaatactttttattagccacagaaaggacaacattaattaaattaaattaaagcattaacaactttggaccatctctttcgaagcctccga 5279806  T
Q  688 tccacatgtggtgcacatcacaaggaaggacaattccttcgtttatttaattgtgaggaacataagctaaggtttgactaatgaaatttgtgtgatctta 787  Q
    |||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5279807 tccacatgcggtgcacatgacaaggaaggacaattacttcgtttatttaattgtgaggaacataagctaaggtttgactaatgaaatttgtgtgatctta 5279906  T
Q  788 acaatttgaaatccccgtggtcggtca 814  Q
    |||||||||||||||||||||||||||    
T  5279907 acaatttgaaatccccgtggtcggtca 5279933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 184 - 331
Target Start/End: Original strand, 5279355 - 5279502
Alignment:
Q  184 cctaatgtcataaactggtcctagttatgctttgttttgcaattgaacttccttattataatggatttcgaccaccctttgttacttgaagtggcacggg 283  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  5279355 cctaatgtcataaactggtcctagttttgctttgttttgcaattgaacttccttatttcaatggatttcgaccaccctttgttacttgaagtggcacggg 5279454  T
Q  284 cttcccttacaactttgtttcaaacaaatatattagtcttaacatgtt 331  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5279455 cttcccttacaactttgtttcaaacaaatatattagtcttaacatgtt 5279502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 45 - 177
Target Start/End: Original strand, 5279054 - 5279186
Alignment:
Q  45 ttaaagtgctggtataaatgagatgttaaaatatcgtactatgatccgtattttttcaacnnnnnnnnttgtattttagtagcttgaaaatagagttgag 144  Q
    |||||||| ||||||||||| ||||| |||| ||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||    
T  5279054 ttaaagtgatggtataaatgggatgtcaaaacatcgtactatgatccgtattttttcaacaaaaaaaattgtattttagtagcttgaaaatagagttgag 5279153  T
Q  145 atgtcaatcgtcataatcgatgcaagtcctttt 177  Q
    || |||| |||||||||| ||||||||| ||||    
T  5279154 atatcaaccgtcataatcaatgcaagtcttttt 5279186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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