View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4436-Insertion-8 (Length: 792)
Name: NF4436-Insertion-8
Description: NF4436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4436-Insertion-8 |
 | |
|
| [»] chr1 (8 HSPs) |
| |
|
| [»] scaffold0059 (2 HSPs) |
| | |
|
| [»] scaffold0554 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 444 - 792
Target Start/End: Complemental strand, 15885260 - 15884912
Alignment:
| Q |
444 |
tgatgatgttttctagtattcgatcaatacgtctatgcaacctctcaagtttaggcctcaaaccagaaacaagttgaagccatttagatgaaggaaacag |
543 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
15885260 |
tgatgatgttttctagtattcgatcaatacgtctatgcaacctctcaagtttaggcctcaaaccggaaacaagttgaatccatttagatgaaggaaacag |
15885161 |
T |
|
| Q |
544 |
ttcacctatgtcaaaacctcctgcaattgattctcccttccccaaagacgtgaactcttcttggtctttgcatttgtttccaaatgcagcccttgaaagg |
643 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15885160 |
ttcacctatgtcaaaacctccagcaattgattctcccttccccaaagacgcgaactcttcttggtctttgcatttgtttccaaatgcagcccttgaaagg |
15885061 |
T |
|
| Q |
644 |
atagcaaatgtcgatgaaactacaagttcagtgaggttgatggatgacccttgcttcgaaccaatccttttgatgagattggtaaacacttcttctctta |
743 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15885060 |
atagcaaatgtcgatgaaactacaagttcagtgaggttgatggatgacccttgcttcgaaccaatccttttgatgagattggtaaacacttcttctctta |
15884961 |
T |
|
| Q |
744 |
ttggatggaatgaactcacacgtttttgcgataaaagctccattgtgca |
792 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
15884960 |
ttggatggaatgaactcacatgtttttgcgataaaagctccattgtgca |
15884912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 8 - 385
Target Start/End: Complemental strand, 15885708 - 15885319
Alignment:
| Q |
8 |
caaataagtgagctcattaatatagttctcaccaacaattccttttgtgttgaatatttctcttacctcatcttgtgctttcttcatcactctttcatcc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
15885708 |
caaataagtgagctcattaatatagttctcaccaacaattccttttgtgttgaacatttctcttacttcatcttgtgctttcttcatcactctttcatcc |
15885609 |
T |
|
| Q |
108 |
cttaccaactctgccattgcccaaactatggtggtactcgatgtatctcctccagcaccaaacatgtcctgaaaagtaaaatgcatgtggctaatgagac |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15885608 |
cttaccaactctgccattgcccaaactatggtggtactcgatgtatctcctccagcaccaaacatgtcctgaaaagtaaaatgcatgtggctaatgagac |
15885509 |
T |
|
| Q |
208 |
ttgaaaacactatgcttcgatgtggataataata------------ataagtatctaacattcatctaaattatatttcaaggggcttattatccttact |
295 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
15885508 |
atgaaaacactatgtttcgatgtggataataataataataataataataagtatctaacattcatctaaattatacttcaaggggtttattatccttact |
15885409 |
T |
|
| Q |
296 |
aggagtacagccttgatgttgttgtcagttaagcatatatctttttcattatcattgcgacgttggtattttagaagaacgtcaaccaaa |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15885408 |
aggagtacagccttgatgttgttgtcagttaagcatatatctttttcattatcattgcgacgttggtattttagaagaacgtcaaccaaa |
15885319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 440 - 792
Target Start/End: Original strand, 12610784 - 12611136
Alignment:
| Q |
440 |
tcagtgatgatgttttctagtattcgatcaatacgtctatgcaacctctcaagtttaggcctcaaaccagaaacaagttgaagccatttagatgaaggaa |
539 |
Q |
| |
|
||||||| ||||||||||||||| ||||||| | |||||||||||||| ||||||||||||||||| |||||| ||||||||||||| | |||||||| |
|
|
| T |
12610784 |
tcagtgacaatgttttctagtatttgatcaatttgcctatgcaacctctccagtttaggcctcaaaccggaaacacgttgaagccatttcgctgaaggaa |
12610883 |
T |
|
| Q |
540 |
acagttcacctatgtcaaaacctcctgcaattgattctcccttccccaaagacgtgaactcttcttggtctttgcatttgtttccaaatgcagcccttga |
639 |
Q |
| |
|
| | |||| ||||||||||||||||||||||||||||||| | || | ||| ||||||||| | |||||| |||| | ||||| |||||| ||| |
|
|
| T |
12610884 |
ataattcagctatgtcaaaacctcctgcaattgattctccatctccaatagatccaaactcttctctgcctttgcctttgctgccaaacgcagcctttgt |
12610983 |
T |
|
| Q |
640 |
aaggatagcaaatgtcgatgaaactacaagttcagtgaggttgatggatgacccttgcttcgaaccaatccttttgatgagattggtaaacacttcttct |
739 |
Q |
| |
|
|| ||||| |||||| |||||||||||||| | ||| | |||| || |||||||| | |||| ||||| |||| | ||||||| ||| | |||||||| |
|
|
| T |
12610984 |
aatgatagaaaatgttgatgaaactacaagctgagttatattgacgggcgacccttgttgcgaatcaatcttttttacgagattgttaagctcttcttct |
12611083 |
T |
|
| Q |
740 |
cttattggatggaatgaactcacacgtttttgcgataaaagctccattgtgca |
792 |
Q |
| |
|
|||||||| || || ||||| ||||| ||||| | ||||||||||||||||| |
|
|
| T |
12611084 |
cttattggttgaaacgaactaacacgcttttgtgtgaaaagctccattgtgca |
12611136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 444 - 773
Target Start/End: Original strand, 12637788 - 12638117
Alignment:
| Q |
444 |
tgatgatgttttctagtattcgatcaatacgtctatgcaacctctcaagtttaggcctcaaaccagaaacaagttgaagccatttagatgaaggaaacag |
543 |
Q |
| |
|
||||||||||| ||| ||| ||||||| |||||||||| ||||| ||||| ||| ||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
12637788 |
tgatgatgtttactaatataagatcaatttgtctatgcaatacctcaattttagacctgaaaccagaaactagttgaagccatttagctgaaggaaacaa |
12637887 |
T |
|
| Q |
544 |
ttcacctatgtcaaaacctcctgcaattgattctcccttccccaaagacgtgaactcttcttggtctttgcatttgtttccaaatgcagcccttgaaagg |
643 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||| || |||| || || || ||||||| ||||||||||||||||||| |||||||||| | |
|
|
| T |
12637888 |
ttcacctatgtcaaaacctcctccaactgattctccatttgccaacgatacgagctgttcttggcctttgcatttgtttccaaacgcagcccttgtagta |
12637987 |
T |
|
| Q |
644 |
atagcaaatgtcgatgaaactacaagttcagtgaggttgatggatgacccttgcttcgaaccaatccttttgatgagattggtaaacacttcttctctta |
743 |
Q |
| |
|
|||| | | |||| |||||| || ||||| |||||||| ||| ||||| | ||| |||| ||||||||||||||||| ||| |||||||||||| |
|
|
| T |
12637988 |
atagtcataattgatgtaactacggcttgagtgatgttgatgggtgatccttgttgtgaatcaatacttttgatgagattggtgaactcttcttctctta |
12638087 |
T |
|
| Q |
744 |
ttggatggaatgaactcacacgtttttgcg |
773 |
Q |
| |
|
| || |||||||||| ||||||||||||| |
|
|
| T |
12638088 |
taggccggaatgaactaacacgtttttgcg |
12638117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 9 - 168
Target Start/End: Original strand, 12610160 - 12610319
Alignment:
| Q |
9 |
aaataagtgagctcattaatatagttctcaccaacaattccttttgtgttgaatatttctcttacctcatcttgtgctttcttcatcactctttcatccc |
108 |
Q |
| |
|
||||||||||| ||||| ||| | || || ||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
12610160 |
aaataagtgagttcatttatacaattttcttcaacatttcctttcatgttgaatatatctcttacctcatcttgtgctttcttcatcactcttttatccc |
12610259 |
T |
|
| Q |
109 |
ttaccaactctgccattgcccaaactatggtggtactcgatgtatctcctccagcaccaa |
168 |
Q |
| |
|
|||||||||||| ||||||||||||||| || | | |||||||| ||||||||||||| |
|
|
| T |
12610260 |
ttaccaactctgacattgcccaaactatagtagaagctgatgtatcacctccagcaccaa |
12610319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 21 - 182
Target Start/End: Original strand, 12637265 - 12637426
Alignment:
| Q |
21 |
tcattaatatagttctcaccaacaattccttttgtgttgaatatttctcttacctcatcttgtgctttcttcatcactctttcatcccttaccaactctg |
120 |
Q |
| |
|
||||| |||||||| ||||||||| ||||||| |||||||||||| ||| || |||| |||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
12637265 |
tcatttatatagttttcaccaacagttcctttcttgttgaatatttttctcacttcatattgtgctttcttcatcactcttggatcccttactaactctg |
12637364 |
T |
|
| Q |
121 |
ccattgcccaaactatggtggtactcgatgtatctcctccagcaccaaacatgtcctgaaaa |
182 |
Q |
| |
|
||||||||||||||||||| || ||||| || ||||||||||||| |||||||||||| |
|
|
| T |
12637365 |
ccattgcccaaactatggtagtggatgatgtttcacctccagcaccaatgatgtcctgaaaa |
12637426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 279 - 351
Target Start/End: Original strand, 12637629 - 12637701
Alignment:
| Q |
279 |
ggcttattatccttactaggagtacagccttgatgttgttgtcagttaagcatatatctttttcattatcatt |
351 |
Q |
| |
|
|||||||||| ||||| |||| || ||||||||| ||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
12637629 |
ggcttattatacttaccaggattatagccttgatattgttgtcagttaagcatatatcttggtcaatatcatt |
12637701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 274 - 383
Target Start/End: Original strand, 12610618 - 12610727
Alignment:
| Q |
274 |
caaggggcttattatccttactaggagtacagccttgatgttgttgtcagttaagcatatatctttttcattatcattgcgacgttggtattttagaaga |
373 |
Q |
| |
|
||||||| ||||||||||||| |||| || || |||||| ||||| |||||||| |||||||||| | | ||||| | || |||| ||||||||||| |
|
|
| T |
12610618 |
caaggggtttattatccttaccaggattatagacttgatattgttatcagttaaacatatatcttggttgctgtcattaccaccttggaattttagaaga |
12610717 |
T |
|
| Q |
374 |
acgtcaacca |
383 |
Q |
| |
|
||||| |||| |
|
|
| T |
12610718 |
acgtctacca |
12610727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 74; Significance: 2e-33; HSPs: 2)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 55 - 192
Target Start/End: Original strand, 62454 - 62591
Alignment:
| Q |
55 |
tgttgaatatttctcttacctcatcttgtgctttcttcatcactctttcatcccttaccaactctgccattgcccaaactatggtggtactcgatgtatc |
154 |
Q |
| |
|
||||| |||||||||| || ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| | | | |||||||| |
|
|
| T |
62454 |
tgttgtatatttctctcacttcatcttgtgctttcttcatcactcttggatctcttaccaactctgccattgcccaaactacgctcaaagctgatgtatc |
62553 |
T |
|
| Q |
155 |
tcctccagcaccaaacatgtcctgaaaagtaaaatgca |
192 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
62554 |
acctccagcaccaaacatgtcctgaaaattaaaatgca |
62591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 448 - 757
Target Start/End: Original strand, 62925 - 63234
Alignment:
| Q |
448 |
gatgttttctagtattcgatcaatacgtctatgcaacctctcaagtttaggcctcaaaccagaaacaagttgaagccatttagatgaaggaaacagttca |
547 |
Q |
| |
|
||||||||| ||||| |||||| ||||||||||||||| |||||||||||| | | | | ||||||||||||||| | ||||||||| | |||| |
|
|
| T |
62925 |
gatgttttcaagtatctgatcaagttgtctatgcaacctcttaagtttaggcctttgattaaatataagttgaagccatttggctgaaggaaataattca |
63024 |
T |
|
| Q |
548 |
cctatgtcaaaacctcctgcaattgattctcccttccccaaagacgtgaactcttcttggtctttgcatttgtttccaaatgcagcccttgaaaggatag |
647 |
Q |
| |
|
||| |||||||||||| |||||||| || || ||||| |||| |||| ||||||| |||||||||||| ||||| ||||||||||||| ||||| |
|
|
| T |
63025 |
attatttcaaaacctcctccaattgatcctatatttcccaatgacgcaaactgttcttgggctttgcatttgtcgccaaacgcagcccttgaaatgatag |
63124 |
T |
|
| Q |
648 |
caaatgtcgatgaaactacaagttcagtgaggttgatggatgacccttgcttcgaaccaatccttttgatgagattggtaaacacttcttctcttattgg |
747 |
Q |
| |
|
|| | | || || |||||||||||||| ||||| | | ||||| | | || ||||||||||||||||||||| | | |||||||||||||||| |
|
|
| T |
63125 |
aaatcattgttgtaagtacaagttcagtgatgttgacaggcaatccttgttgcaaatcaatccttttgatgagattggagagctcttcttctcttattgg |
63224 |
T |
|
| Q |
748 |
atggaatgaa |
757 |
Q |
| |
|
|||||||| |
|
|
| T |
63225 |
ccggaatgaa |
63234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 65 - 185
Target Start/End: Original strand, 21780124 - 21780244
Alignment:
| Q |
65 |
ttctcttacctcatcttgtgctttcttcatcactctttcatcccttaccaactctgccattgcccaaactatggtggtactcgatgtatctcctccagca |
164 |
Q |
| |
|
|||||| || |||||||||||||||||||| | |||| ||||||||||| ||| ||||||||||| |||||||| | ||||| || ||||||||| |
|
|
| T |
21780124 |
ttctctcacttcatcttgtgctttcttcattattcttggatcccttaccatttctaccattgcccaatctatggtgcttgctgatgtctcacctccagca |
21780223 |
T |
|
| Q |
165 |
ccaaacatgtcctgaaaagta |
185 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
21780224 |
ccaaacatgtcctgaaaagta |
21780244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 5e-18; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 66 - 185
Target Start/End: Original strand, 23036482 - 23036601
Alignment:
| Q |
66 |
tctcttacctcatcttgtgctttcttcatcactctttcatcccttaccaactctgccattgcccaaactatggtggtactcgatgtatctcctccagcac |
165 |
Q |
| |
|
||||| |||||| |||||||||||||||| | |||| || |||||||| ||||||||||||||| |||||||| | ||||| || |||||||||| |
|
|
| T |
23036482 |
tctctcacctcagcttgtgctttcttcattattcttggattccttaccatttctgccattgcccaatctatggtgcttgctgatgtctcacctccagcac |
23036581 |
T |
|
| Q |
166 |
caaacatgtcctgaaaagta |
185 |
Q |
| |
|
|||| ||||||||||||||| |
|
|
| T |
23036582 |
caaaaatgtcctgaaaagta |
23036601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 66 - 180
Target Start/End: Original strand, 23149070 - 23149184
Alignment:
| Q |
66 |
tctcttacctcatcttgtgctttcttcatcactctttcatcccttaccaactctgccattgcccaaactatggtggtactcgatgtatctcctccagcac |
165 |
Q |
| |
|
||||| ||||||||||||||||||||||| | |||| |||| |||||| |||| ||||||||||| |||||||| | ||||| || |||||||||| |
|
|
| T |
23149070 |
tctctcacctcatcttgtgctttcttcattattcttggatcctttaccatctctaccattgcccaatctatggtgcttgctgatgtctcgcctccagcac |
23149169 |
T |
|
| Q |
166 |
caaacatgtcctgaa |
180 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
23149170 |
caaaaatgtcctgaa |
23149184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 66 - 185
Target Start/End: Original strand, 23146232 - 23146351
Alignment:
| Q |
66 |
tctcttacctcatcttgtgctttcttcatcactctttcatcccttaccaactctgccattgcccaaactatggtggtactcgatgtatctcctccagcac |
165 |
Q |
| |
|
||||| ||||||||||||||||||||||| | |||| |||| ||||||| ||| ||||||||||| |||||||| | ||||| || ||||||||| |
|
|
| T |
23146232 |
tctctcacctcatcttgtgctttcttcatgattcttggatcctttaccaattctaccattgcccaatctatggtgcttgctgatgtctcacctccagcag |
23146331 |
T |
|
| Q |
166 |
caaacatgtcctgaaaagta |
185 |
Q |
| |
|
|||| |||||||| |||||| |
|
|
| T |
23146332 |
caaaaatgtcctgtaaagta |
23146351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 436 - 542
Target Start/End: Original strand, 23039803 - 23039909
Alignment:
| Q |
436 |
atgctcagtgatgatgttttctagtattcgatcaatacgtctatgcaacctctcaagtttaggcctcaaaccagaaacaagttgaagccatttagatgaa |
535 |
Q |
| |
|
||||||| ||||||||||||||| ||| ||||| | ||| ||| ||||||||||| |||||||||| ||||| |||||| || | |||||||| ||| |
|
|
| T |
23039803 |
atgctcattgatgatgttttctaatatctgatcagtttgtcgatgaaacctctcaagcttaggcctcataccagtaacaagctgtaaccatttagctgag |
23039902 |
T |
|
| Q |
536 |
ggaaaca |
542 |
Q |
| |
|
||||||| |
|
|
| T |
23039903 |
ggaaaca |
23039909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 436 - 569
Target Start/End: Original strand, 23146678 - 23146811
Alignment:
| Q |
436 |
atgctcagtgatgatgttttctagtattcgatcaatacgtctatgcaacctctcaagtttaggcctcaaaccagaaacaagttgaagccatttagatgaa |
535 |
Q |
| |
|
||||||| ||||||||||||| | ||| ||||| | ||| ||| ||||||||||| |||||||||| ||||| |||||| || | |||||||| ||| |
|
|
| T |
23146678 |
atgctcattgatgatgttttcaaatatctgatcagtttgtcgatgaaacctctcaagcttaggcctcataccagtaacaagctgtaaccatttagctgag |
23146777 |
T |
|
| Q |
536 |
ggaaacagttcacctatgtcaaaacctcctgcaa |
569 |
Q |
| |
|
||||||| || || | ||||||||| ||||||| |
|
|
| T |
23146778 |
ggaaacaaatctcccaagtcaaaaccccctgcaa |
23146811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 180
Target Start/End: Original strand, 23024590 - 23024698
Alignment:
| Q |
72 |
acctcatcttgtgctttcttcatcactctttcatcccttaccaactctgccattgcccaaactatggtggtactcgatgtatctcctccagcaccaaaca |
171 |
Q |
| |
|
|||||| |||||||||||||||| | |||| || | |||||| ||||||||||||||| |||||||| | ||||| || |||||||||||||| | |
|
|
| T |
23024590 |
acctcagcttgtgctttcttcattattcttggattctttaccatttctgccattgcccaatctatggtgcttgctgatgtctcacctccagcaccaaaaa |
23024689 |
T |
|
| Q |
172 |
tgtcctgaa |
180 |
Q |
| |
|
||||||||| |
|
|
| T |
23024690 |
tgtcctgaa |
23024698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 486 - 570
Target Start/End: Original strand, 23033659 - 23033743
Alignment:
| Q |
486 |
tctcaagtttaggcctcaaaccagaaacaagttgaagccatttagatgaaggaaacagttcacctatgtcaaaacctcctgcaat |
570 |
Q |
| |
|
||||||| |||||||| | ||||| |||| |||||||||||||||| |||||||||| || || | || ||||||||||||||| |
|
|
| T |
23033659 |
tctcaagcttaggcctaataccagtaacatgttgaagccatttagaagaaggaaacaaatctcccaagttaaaacctcctgcaat |
23033743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 66 - 185
Target Start/End: Original strand, 23033011 - 23033130
Alignment:
| Q |
66 |
tctcttacctcatcttgtgctttcttcatcactctttcatcccttaccaactctgccattgcccaaactatggtggtactcgatgtatctcctccagcac |
165 |
Q |
| |
|
||||| |||||| |||||||||||||||| | || || ||| |||| || |||| ||| |||||| |||||||| | ||||| || |||||||||| |
|
|
| T |
23033011 |
tctctcacctcagcttgtgctttcttcattattcgttgatctcttatcatttctgtcatcgcccaatctatggtgcttgctgatgtctcgcctccagcac |
23033110 |
T |
|
| Q |
166 |
caaacatgtcctgaaaagta |
185 |
Q |
| |
|
|||| ||||||||||||||| |
|
|
| T |
23033111 |
caaaaatgtcctgaaaagta |
23033130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 66 - 185
Target Start/End: Original strand, 23039353 - 23039472
Alignment:
| Q |
66 |
tctcttacctcatcttgtgctttcttcatcactctttcatcccttaccaactctgccattgcccaaactatggtggtactcgatgtatctcctccagcac |
165 |
Q |
| |
|
||||| ||||||||||| ||||||||||| | |||| |||||||| || ||| |||||||||| |||||||| | ||||| || |||||||||| |
|
|
| T |
23039353 |
tctctcacctcatcttgcgctttcttcattattcttggatcccttatcatttctaccattgcccagtctatggtgcttgctgatgtctcacctccagcac |
23039452 |
T |
|
| Q |
166 |
caaacatgtcctgaaaagta |
185 |
Q |
| |
|
|||| | ||||||||||||| |
|
|
| T |
23039453 |
caaaaacgtcctgaaaagta |
23039472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 180
Target Start/End: Original strand, 23140358 - 23140472
Alignment:
| Q |
66 |
tctcttacctcatcttgtgctttcttcatcactctttcatcccttaccaactctgccattgcccaaactatggtggtactcgatgtatctcctccagcac |
165 |
Q |
| |
|
||||| ||||||||||| |||||||||| | |||| |||||||| || ||| ||||||||||| |||||||| | ||||| || |||||||||| |
|
|
| T |
23140358 |
tctctcacctcatcttgcactttcttcattattcttggatcccttatcatttctaccattgcccaatctatggtgcttgctgatgtctcacctccagcac |
23140457 |
T |
|
| Q |
166 |
caaacatgtcctgaa |
180 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
23140458 |
caaaaatgtcctgaa |
23140472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 436 - 542
Target Start/End: Original strand, 23036926 - 23037032
Alignment:
| Q |
436 |
atgctcagtgatgatgttttctagtattcgatcaatacgtctatgcaacctctcaagtttaggcctcaaaccagaaacaagttgaagccatttagatgaa |
535 |
Q |
| |
|
||||||| ||||||||||||||| ||| ||||| | ||| ||| | |||||| || |||||||||||||||| || | | || |||||||||| ||| |
|
|
| T |
23036926 |
atgctcattgatgatgttttctaatatctgatcagtttgtcgatgaatcctctccagcttaggcctcaaaccagtaatacgctgtagccatttagctgag |
23037025 |
T |
|
| Q |
536 |
ggaaaca |
542 |
Q |
| |
|
||||||| |
|
|
| T |
23037026 |
ggaaaca |
23037032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0554 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 2)
Name: scaffold0554
Description:
Target: scaffold0554; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 436 - 570
Target Start/End: Complemental strand, 5760 - 5626
Alignment:
| Q |
436 |
atgctcagtgatgatgttttctagtattcgatcaatacgtctatgcaacctctcaagtttaggcctcaaaccagaaacaagttgaagccatttagatgaa |
535 |
Q |
| |
|
||||||| ||||||||||||| |||||| ||||| | ||| ||| | | ||||||| |||||||||||||||| ||| |||| |||||||||| || |
|
|
| T |
5760 |
atgctcattgatgatgttttcaagtatttgatcagtttgtcgatgaagcatctcaagcttaggcctcaaaccagtaacttgttgtagccatttagcagat |
5661 |
T |
|
| Q |
536 |
ggaaacagttcacctatgtcaaaacctcctgcaat |
570 |
Q |
| |
|
||||||| || || | |||||||||||||||||| |
|
|
| T |
5660 |
ggaaacaaatctcccaagtcaaaacctcctgcaat |
5626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0554; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 185
Target Start/End: Complemental strand, 6436 - 6323
Alignment:
| Q |
72 |
acctcatcttgtgctttcttcatcactctttcatcccttaccaactctgccattgcccaaactatggtggtactcgatgtatctcctccagcaccaaaca |
171 |
Q |
| |
|
|||||| ||||||||||| |||| | |||| ||||||| || ||||||||||||||| |||||||||| |||||||| |||||||||||||| | |
|
|
| T |
6436 |
acctcagcttgtgctttcatcattattcttggctcccttatcatttctgccattgcccaatctatggtggttgctgatgtatcacctccagcaccaaaaa |
6337 |
T |
|
| Q |
172 |
tgtcctgaaaagta |
185 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
6336 |
tgtcctaaaaagta |
6323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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