View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4436-Insertion-9 (Length: 753)

Name: NF4436-Insertion-9
Description: NF4436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4436-Insertion-9
NF4436-Insertion-9
[»] chr3 (20 HSPs)
chr3 (253-739)||(2447304-2447793)
chr3 (34-233)||(2447114-2447307)
chr3 (539-736)||(41649945-41650142)
chr3 (543-739)||(49501420-49501616)
chr3 (543-736)||(49741990-49742183)
chr3 (543-735)||(49303211-49303403)
chr3 (543-739)||(23029650-23029835)
chr3 (12-133)||(2485461-2485582)
chr3 (10-117)||(9564309-9564416)
chr3 (8-135)||(2495875-2495998)
chr3 (8-92)||(674985-675069)
chr3 (8-92)||(749581-749665)
chr3 (8-126)||(2634299-2634415)
chr3 (479-559)||(53401593-53401671)
chr3 (343-418)||(2485853-2485927)
chr3 (479-518)||(37280603-37280642)
chr3 (479-517)||(39417955-39417993)
chr3 (479-553)||(49501657-49501731)
chr3 (567-642)||(39415371-39415446)
chr3 (35-80)||(2641519-2641564)
[»] chr5 (18 HSPs)
chr5 (479-739)||(7662092-7662352)
chr5 (543-739)||(1081776-1081972)
chr5 (543-739)||(12144049-12144245)
chr5 (543-738)||(18172025-18172219)
chr5 (561-669)||(34954069-34954177)
chr5 (543-669)||(2786735-2786861)
chr5 (479-559)||(1082007-1082086)
chr5 (671-739)||(8688213-8688281)
chr5 (684-739)||(2786854-2786909)
chr5 (548-733)||(40033894-40034081)
chr5 (684-739)||(34954170-34954225)
chr5 (479-559)||(18172254-18172334)
chr5 (479-518)||(8688104-8688143)
chr5 (479-518)||(13275102-13275141)
chr5 (479-514)||(20887938-20887973)
chr5 (487-553)||(2786628-2786694)
chr5 (543-669)||(43147384-43147510)
chr5 (479-516)||(28784932-28784969)
[»] chr1 (27 HSPs)
chr1 (543-736)||(7014665-7014858)
chr1 (543-739)||(33686432-33686628)
chr1 (543-739)||(43138537-43138733)
chr1 (548-739)||(12926835-12927026)
chr1 (479-739)||(15399008-15399269)
chr1 (572-736)||(10308504-10308668)
chr1 (479-669)||(49150483-49150673)
chr1 (588-739)||(30858544-30858699)
chr1 (548-705)||(1671248-1671405)
chr1 (588-705)||(22605486-22605604)
chr1 (479-559)||(10308361-10308441)
chr1 (479-559)||(12926715-12926795)
chr1 (679-739)||(49150661-49150721)
chr1 (479-518)||(46923665-46923704)
chr1 (479-518)||(48569435-48569474)
chr1 (479-559)||(33686663-33686743)
chr1 (479-518)||(18169182-18169221)
chr1 (479-518)||(23943678-23943717)
chr1 (479-518)||(30308266-30308305)
chr1 (479-518)||(39222590-39222629)
chr1 (679-736)||(45053368-45053425)
chr1 (479-520)||(49000851-49000892)
chr1 (479-518)||(7015059-7015098)
chr1 (479-517)||(16315395-16315433)
chr1 (479-517)||(33296425-33296463)
chr1 (479-517)||(49599864-49599902)
chr1 (485-518)||(9355467-9355500)
[»] chr2 (22 HSPs)
chr2 (543-739)||(34619789-34619985)
chr2 (539-739)||(41192271-41192471)
chr2 (561-739)||(6728639-6728817)
chr2 (543-739)||(32737760-32737956)
chr2 (548-735)||(5814427-5814614)
chr2 (570-739)||(1887948-1888117)
chr2 (588-739)||(21083816-21083966)
chr2 (543-739)||(5290587-5290784)
chr2 (588-739)||(26257663-26257814)
chr2 (645-739)||(35151417-35151511)
chr2 (543-736)||(4616535-4616722)
chr2 (478-559)||(34620001-34620082)
chr2 (543-739)||(37057202-37057411)
chr2 (479-559)||(41192502-41192582)
chr2 (588-705)||(2195089-2195206)
chr2 (479-518)||(42242112-42242151)
chr2 (479-518)||(43837507-43837546)
chr2 (479-559)||(5814655-5814735)
chr2 (479-559)||(21083656-21083736)
chr2 (480-558)||(4616758-4616836)
chr2 (479-516)||(5848166-5848203)
chr2 (479-512)||(32733934-32733967)
[»] chr7 (13 HSPs)
chr7 (561-735)||(3742262-3742436)
chr7 (537-736)||(4035043-4035242)
chr7 (543-734)||(37450005-37450195)
chr7 (543-739)||(14678307-14678503)
chr7 (588-739)||(40144671-40144822)
chr7 (543-739)||(39283992-39284188)
chr7 (479-559)||(4035271-4035351)
chr7 (478-514)||(23943804-23943840)
chr7 (479-515)||(39476416-39476452)
chr7 (588-669)||(33802990-33803071)
chr7 (543-627)||(8260882-8260966)
chr7 (479-519)||(18236719-18236759)
chr7 (479-520)||(47441554-47441595)
[»] scaffold0051 (1 HSPs)
scaffold0051 (543-735)||(20096-20288)
[»] chr4 (28 HSPs)
chr4 (543-739)||(52789398-52789594)
chr4 (540-739)||(54808892-54809091)
chr4 (479-739)||(51242740-51243010)
chr4 (588-736)||(36046797-36046945)
chr4 (555-736)||(34939250-34939431)
chr4 (543-739)||(33985337-33985533)
chr4 (567-739)||(54703664-54703835)
chr4 (478-739)||(47020003-47020263)
chr4 (543-737)||(42118977-42119172)
chr4 (543-689)||(43502223-43502369)
chr4 (561-739)||(52032586-52032768)
chr4 (548-736)||(45042900-45043088)
chr4 (588-739)||(37694398-37694551)
chr4 (479-559)||(52032802-52032882)
chr4 (479-559)||(54703525-54703605)
chr4 (588-739)||(779339-779495)
chr4 (479-559)||(36047011-36047091)
chr4 (477-518)||(31825889-31825930)
chr4 (479-518)||(21713325-21713364)
chr4 (572-642)||(31823039-31823109)
chr4 (479-518)||(21710700-21710739)
chr4 (477-512)||(38133033-38133068)
chr4 (479-518)||(45865025-45865064)
chr4 (479-518)||(49065711-49065750)
chr4 (479-518)||(54185681-54185720)
chr4 (479-553)||(34939484-34939558)
chr4 (479-520)||(18487167-18487208)
chr4 (485-518)||(38131332-38131365)
[»] chr8 (19 HSPs)
chr8 (555-739)||(4322711-4322895)
chr8 (555-739)||(35161621-35161804)
chr8 (588-735)||(15739599-15739746)
chr8 (543-739)||(9039668-9039864)
chr8 (540-739)||(1217791-1217990)
chr8 (588-739)||(5913004-5913155)
chr8 (588-738)||(42182708-42182861)
chr8 (543-737)||(4759094-4759292)
chr8 (479-559)||(15743308-15743388)
chr8 (587-665)||(2766825-2766903)
chr8 (572-737)||(23810741-23810911)
chr8 (479-553)||(35161495-35161569)
chr8 (482-551)||(4322587-4322656)
chr8 (479-518)||(43693725-43693764)
chr8 (480-518)||(37226988-37227026)
chr8 (479-518)||(4412597-4412636)
chr8 (479-514)||(9512530-9512565)
chr8 (479-553)||(1217679-1217753)
chr8 (477-518)||(23542903-23542944)
[»] chr6 (8 HSPs)
chr6 (566-739)||(11599045-11599212)
chr6 (543-739)||(30634003-30634199)
chr6 (543-705)||(3515140-3515302)
chr6 (479-551)||(11598907-11598979)
chr6 (479-518)||(5741178-5741217)
chr6 (479-518)||(5741563-5741602)
chr6 (472-559)||(30634234-30634321)
chr6 (479-516)||(9521486-9521523)
[»] scaffold0019 (1 HSPs)
scaffold0019 (8-126)||(2539-2657)
[»] scaffold0007 (1 HSPs)
scaffold0007 (479-510)||(256391-256422)
[»] scaffold0217 (1 HSPs)
scaffold0217 (566-627)||(25624-25685)


Alignment Details
Target: chr3 (Bit Score: 416; Significance: 0; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 253 - 739
Target Start/End: Original strand, 2447304 - 2447793
Alignment:
Q  253 ccattatatggcaatgctgtctgtttgattctaatcatctcgacatgtttcgttctgaaacttcctgacattgtatccttgttagcatcactatgtcatt 352  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  2447304 ccattatatggcaatgctgtctgtttgattctaatcatctcgacatgtttcgttctgaaacttcatgacattgtatccttgttagcatcactatgtcatt 2447403  T
Q  353 tctactcttatctatgtttatatattgccggcaaaattgcaacatgaagtttc---aagaagttgaattgtggtgatatgacccatgagaattaagttcg 449  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||   |||||||||||||||||||||||| |||||||||||||||| ||    
T  2447404 tctactcttatctatgtttatatattgccggcaaaattgctacatgaagtttctagaagaagttgaattgtggtgatatggcccatgagaattaagtccg 2447503  T
Q  450 cacaaggctacatcatatgaataagaaaggaattctgctcttcaccctgcacattttgctcgcgccctgtacttttttcaattttgaccctgtgtgagtt 549  Q
     ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||| ||||||||||||||||||    
T  2447504 gacaaggctacatcatatgaataagaaaggaattctgctcttcaccttgcacattttgctcgtgccctgcacttttttcaaatttgaccctgtgtgagtt 2447603  T
Q  550 aagttacgcatcactaagcctatgcgtgagttaattgacgcaagttggccagtggtaaaaactgaagcacaaacgtttcttggacggtagtcaatggttt 649  Q
    |||| ||||| ||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2447604 aagtcacgcaacactaagcctatgcgcgagttaactggcgcaagttggccagtggtaaaaactgaagcacaaacgtttcttggacggtagtcaatggttt 2447703  T
Q  650 tgattggattttacacgtttctcttaagtttttcacacgtttttggacctcattaaatgccatataccttataccacctataaaaaccct 739  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2447704 tgattggattttacacgtttttcttaagtttttcacacgtttttggacctcattaaatgccatataccttataccacctataaaaaccct 2447793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 34 - 233
Target Start/End: Original strand, 2447114 - 2447307
Alignment:
Q  34 tgaattgcttaggttcattttatggtctggagctttgctgaagatggcggtgaaaaagggtagcagttctagtgttgtggaattcctaagttccgtttaa 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2447114 tgaattgcttaggttcattttatggtctggagctttgctgaagatggcggtgaaaaagggtagcagttctagtgttgtggaattcctaagttccgtttaa 2447213  T
Q  134 ctagttctatatgttctcaatagtttgcataaccttgtctttcactttgttatacttgttctaattctaaaagaaaaagagttgtacacttttgttccat 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||  ||||||||    
T  2447214 ctagttctatatgttctcaatagtttgcataaccttgtctttcactttgttatacttg------ttctaaaagaaaaagagttgtacactcctgttccat 2447307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 539 - 736
Target Start/End: Original strand, 41649945 - 41650142
Alignment:
Q  539 ctgtgtgagttaagttacgcatcactaagcctatgcgtgagttaattgacgcaagttggccagtggtaaaaactgaagcacaaacgtttcttggacggta 638  Q
    |||||||| |||||| |||||  ||| |||||||||| |||||||||  |||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  41649945 ctgtgtgacttaagtcacgcactactgagcctatgcgcgagttaatttgcgcaagttggccggtggtaaaaactgaagcacaaatgtttcttggacggta 41650044  T
Q  639 gtcaatggttttgattggattttacacgtttctcttaagtttttcacacgtttttggacctcattaaatgccatataccttataccacctataaaaac 736  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  41650045 gtcaatggttttgattggattttacacgttttccttaagtttttcacacgtttttggacctcattaagtgtcatataccttataccacctataaaaac 41650142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 133; E-Value: 9e-69
Query Start/End: Original strand, 543 - 739
Target Start/End: Complemental strand, 49501616 - 49501420
Alignment:
Q  543 gtgagttaagttacgcatcactaagcctatgcgtgagttaattgacgcaagttggccagtggtaaaaactgaagcacaaacgtttcttggacggtagtca 642  Q
    |||| |||||| ||||| |||| ||| |||||||||||||| |  |||||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  49501616 gtgacttaagtcacgcaccactgagcttatgcgtgagttaacttgcgcaagttggtcggtggtaaaaactgaagcacaaacgtttcttggacggtagtca 49501517  T
Q  643 atggttttgattggattttacacgtttctcttaagtttttcacacgtttttggacctcattaaatgccatataccttataccacctataaaaaccct 739  Q
    ||| |||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||    
T  49501516 atgattttgattagattttacacgtttttcttaagtttttcacacgtttttgaacctcattaagtgtcatataccttataccacctataaaaaccct 49501420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 543 - 736
Target Start/End: Complemental strand, 49742183 - 49741990
Alignment:
Q  543 gtgagttaagttacgcatcactaagcctatgcgtgagttaattgacgcaagttggccagtggtaaaaactgaagcacaaacgtttcttggacggtagtca 642  Q
    |||| |||||| ||||| |||| || ||||||| ||||||| |  ||||||||| || |||||| |||||||||||||||||||||||||||  ||||||    
T  49742183 gtgacttaagtcacgcaccactgagtctatgcgcgagttaacttgcgcaagttgcccggtggtagaaactgaagcacaaacgtttcttggacaatagtca 49742084  T
Q  643 atggttttgattggattttacacgtttctcttaagtttttcacacgtttttggacctcattaaatgccatataccttataccacctataaaaac 736  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  49742083 atggttttgattggattttacacgtttttcttacgtttttcacacgtttttggaccttattaagtgccatataccttataccacctataaaaac 49741990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 543 - 735
Target Start/End: Original strand, 49303211 - 49303403
Alignment:
Q  543 gtgagttaagttacgcatcactaagcctatgcgtgagttaattgacgcaagttggccagtggtaaaaactgaagcacaaacgtttcttggacggtagtca 642  Q
    |||| |||||| || || |||| ||||| |||| ||||||| |  |||||||||||| ||||||||||||||||||||||||||||| |||||||| |||    
T  49303211 gtgacttaagtcacacaccactgagcctctgcgcgagttaactcgcgcaagttggccggtggtaaaaactgaagcacaaacgtttctaggacggtaatca 49303310  T
Q  643 atggttttgattggattttacacgtttctcttaagtttttcacacgtttttggacctcattaaatgccatataccttataccacctataaaaa 735  Q
    ||| |||||||||| |||||||| ||| | ||||||||||||||||||||||||||||||||| ||  || ||||||| ||||||||||||||    
T  49303311 atgcttttgattggtttttacacattttttttaagtttttcacacgtttttggacctcattaagtgttatctaccttacaccacctataaaaa 49303403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 543 - 739
Target Start/End: Original strand, 23029650 - 23029835
Alignment:
Q  543 gtgagttaagttacgcatcactaagcctatgcgtgagttaattgacgcaagttggccagtggtaaaaactgaagcacaaacgtttcttggacggtagtca 642  Q
    |||| |||||| | ||| |||| |||||||||| ||||||| |  | | |||||||| |||||| |||||||| || |||||||||||||||||||||||    
T  23029650 gtgacttaagtcatgcaccactgagcctatgcgggagttaacttgccctagttggccggtggtagaaactgaaacagaaacgtttcttggacggtagtca 23029749  T
Q  643 atggttttgattggattttacacgtttctcttaagtttttcacacgtttttggacctcattaaatgccatataccttataccacctataaaaaccct 739  Q
    ||||||||||||||||||||           || ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||    
T  23029750 atggttttgattggatttta-----------tacgtttttcacacgtttttggacctcattaagtgccataaaccttataccacctataaacaccct 23029835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 12 - 133
Target Start/End: Original strand, 2485461 - 2485582
Alignment:
Q  12 gaagggttattcggtggctggctgaattgcttaggttcattttatggtctggagctttgctgaagatggcggtgaaaaagggtagcagttctagtgttgt 111  Q
    |||||||||||||  |||||||||| ||||||| ||||||||| ||||||||||| ||||||||||||| |||||||| |||||  ||||||||||||||    
T  2485461 gaagggttattcgcaggctggctgagttgcttatgttcattttgtggtctggagccttgctgaagatggtggtgaaaaggggtaatagttctagtgttgt 2485560  T
Q  112 ggaattcctaagttccgtttaa 133  Q
     |||||||||||||| ||||||    
T  2485561 cgaattcctaagttcagtttaa 2485582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 10 - 117
Target Start/End: Complemental strand, 9564416 - 9564309
Alignment:
Q  10 tagaagggttattcggtggctggctgaattgcttaggttcattttatggtctggagctttgctgaagatggcggtgaaaaagggtagcagttctagtgtt 109  Q
    ||||||||||||||  | ||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||| | | |||| ||| ||     
T  9564416 tagaagggttattcactagctggctgaattgcttaggttcattttgtggtctggagtattgctgaagatggcggtgaaaaaggatcgtagttttagggtc 9564317  T
Q  110 gtggaatt 117  Q
    ||||||||    
T  9564316 gtggaatt 9564309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 8 - 135
Target Start/End: Original strand, 2495875 - 2495998
Alignment:
Q  8 aatagaagggttattcggtggctggctgaattgcttaggttcattttatggtctggagctttgctgaagatggcggtgaaaaagggtagcagttctagtg 107  Q
    ||||||||||||| ||| |||||||||||||| ||||||||  |||| |||||||||||||  ||||||||||||||||||  |||||  |||    |||    
T  2495875 aatagaagggttactcgctggctggctgaattccttaggtttgttttgtggtctggagcttcactgaagatggcggtgaaagggggtaatagt----gtg 2495970  T
Q  108 ttgtggaattcctaagttccgtttaact 135  Q
    ||||||||||||| | ||| ||||||||    
T  2495971 ttgtggaattcctgaattcagtttaact 2495998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 8 - 92
Target Start/End: Complemental strand, 675069 - 674985
Alignment:
Q  8 aatagaagggttattcggtggctggctgaattgcttaggttcattttatggtctggagctttgctgaagatggcggtgaaaaagg 92  Q
    ||||||||||| ||||  | ||||||| ||||||||||||||||||| ||||||||||| |||||||||||||| || |||||||    
T  675069 aatagaagggtaattcactagctggcttaattgcttaggttcattttctggtctggagcgttgctgaagatggctgttaaaaagg 674985  T

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Target: chr3; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 8 - 92
Target Start/End: Complemental strand, 749665 - 749581
Alignment:
Q  8 aatagaagggttattcggtggctggctgaattgcttaggttcattttatggtctggagctttgctgaagatggcggtgaaaaagg 92  Q
    ||||||||||| ||||  | ||||||| ||||||||||||||||||| ||||||||||| |||||||||||||| || |||||||    
T  749665 aatagaagggtaattcactagctggcttaattgcttaggttcattttctggtctggagcgttgctgaagatggctgttaaaaagg 749581  T

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Target: chr3; HSP #13
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 8 - 126
Target Start/End: Original strand, 2634299 - 2634415
Alignment:
Q  8 aatagaagggttattcggtggctggctgaattgcttaggttcattttatggtctggagctttgctgaagatggcggtgaaaaagggtagcagttctagtg 107  Q
    ||||||||||||||||  |  ||||||||||||||| |||  || || |||||||||||  ||||||||||||| |||||||||||||| |||| ||| |    
T  2634299 aatagaagggttattctctatctggctgaattgcttcggt--atcttgtggtctggagcggtgctgaagatggccgtgaaaaagggtagtagttttaggg 2634396  T
Q  108 ttgtggaattcctaagttc 126  Q
    ||||||||| || ||||||    
T  2634397 ttgtggaatccccaagttc 2634415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 479 - 559
Target Start/End: Complemental strand, 53401671 - 53401593
Alignment:
Q  479 gaattctgctcttcaccctgcacattttgctcgcgccctgtacttttttcaattttgaccctgtgtgagttaagttacgca 559  Q
    ||||||| ||||||||||| ||||||| ||||||| |||| ||||||||||| ||||| |||| |||||||||||||||||    
T  53401671 gaattctcctcttcaccctacacatttcgctcgcg-cctgcacttttttcaaatttga-cctgcgtgagttaagttacgca 53401593  T

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Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 343 - 418
Target Start/End: Original strand, 2485853 - 2485927
Alignment:
Q  343 ctatgtcatttctactcttatctatgtttatatattgccggcaaaattgcaacatgaagtttcaagaagttgaatt 418  Q
    |||||||||||| | ||||| |||| ||||| || |||||||||||| || |||||||||||| ||||||||||||    
T  2485853 ctatgtcatttcaagtcttaactatatttat-taatgccggcaaaatggctacatgaagtttctagaagttgaatt 2485927  T

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Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 479 - 518
Target Start/End: Original strand, 37280603 - 37280642
Alignment:
Q  479 gaattctgctcttcaccctgcacattttgctcgcgccctg 518  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  37280603 gaattctgctcttcaccctgcacattctgctcgcgccctg 37280642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 479 - 517
Target Start/End: Complemental strand, 39417993 - 39417955
Alignment:
Q  479 gaattctgctcttcaccctgcacattttgctcgcgccct 517  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  39417993 gaattctgctcttcaccctccacattttgctcgcgccct 39417955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 479 - 553
Target Start/End: Complemental strand, 49501731 - 49501657
Alignment:
Q  479 gaattctgctcttcaccctgcacattttgctcgcgccctgtacttttttcaattttgaccctgtgtgagttaagt 553  Q
    |||||||||||||||||||| |||||||| ||||| |||| | ||||| ||| | | |||||| |||||||||||    
T  49501731 gaattctgctcttcaccctgtacattttgttcgcgtcctgcattttttccaaatataaccctgcgtgagttaagt 49501657  T

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Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 567 - 642
Target Start/End: Original strand, 39415371 - 39415446
Alignment:
Q  567 gcctatgcgtgagttaattgacgcaagttggccagtggtaaaaactgaagcacaaacgtttcttggacggtagtca 642  Q
    |||| |||||||||||| | ||||| |||||||  |||| | |||||||| |||||||||| ||||||||| ||||    
T  39415371 gcctgtgcgtgagttaactcacgcacgttggccgatggttagaactgaagaacaaacgttttttggacggtggtca 39415446  T

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Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 80
Target Start/End: Complemental strand, 2641564 - 2641519
Alignment:
Q  35 gaattgcttaggttcattttatggtctggagctttgctgaagatgg 80  Q
    ||||||||| ||||| |||| ||||||||||||||||| |||||||    
T  2641564 gaattgcttgggttctttttgtggtctggagctttgctaaagatgg 2641519  T

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Target: chr5 (Bit Score: 161; Significance: 2e-85; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 479 - 739
Target Start/End: Complemental strand, 7662352 - 7662092
Alignment:
Q  479 gaattctgctcttcaccctgcacattttgctcgcgccctgtacttttttcaattttgaccctgtgtgagttaagttacgcatcactaagcctatgcgtga 578  Q
    ||||||||||||||| |||| ||||||| ||||||||||| || |||||||| | ||||| || ||||||||||| ||||| |||| |||||||||| ||    
T  7662352 gaattctgctcttcatcctgaacattttactcgcgccctgcacatttttcaaatatgaccttgcgtgagttaagtcacgcaccactgagcctatgcgcga 7662253  T
Q  579 gttaattgacgcaagttggccagtggtaaaaactgaagcacaaacgtttcttggacggtagtcaatggttttgattggattttacacgtttctcttaagt 678  Q
     |||| |  |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  7662252 tttaacttgcgcaagttggccggtggtaaaaactgaagcacaaacgtttcttgaacggtagtcaatggttttgattggattttacacgtttttcttaagt 7662153  T
Q  679 ttttcacacgtttttggacctcattaaatgccatataccttataccacctataaaaaccct 739  Q
    ||||||||||||||||||||| ||||| ||  ||||||||||||||| |||||||||||||    
T  7662152 ttttcacacgtttttggaccttattaagtgttatataccttataccatctataaaaaccct 7662092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 543 - 739
Target Start/End: Complemental strand, 1081972 - 1081776
Alignment:
Q  543 gtgagttaagttacgcatcactaagcctatgcgtgagttaattgacgcaagttggccagtggtaaaaactgaagcacaaacgtttcttggacggtagtca 642  Q
    |||| |||||| ||||| |||| |||||||||| ||||||| |  ||||||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  1081972 gtgacttaagtcacgcaccactgagcctatgcgcgagttaacttgcgcaagttgaccggtggtaaaaactgaagcacaaacgtttcttggacggtagtca 1081873  T
Q  643 atggttttgattggattttacacgtttctcttaagtttttcacacgtttttggacctcattaaatgccatataccttataccacctataaaaaccct 739  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  1081872 atggttttgattggattttacacgtttttctgaagtttttcacacgtttttggacctcattaaatgacatataccttataccacctataaaagccct 1081776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 543 - 739
Target Start/End: Original strand, 12144049 - 12144245
Alignment:
Q  543 gtgagttaagttacgcatcactaagcctatgcgtgagttaattgacgcaagttggccagtggtaaaaactgaagcacaaacgtttcttggacggtagtca 642  Q
    |||| |||||| ||||| |||| |||||||||  ||||||| |  |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  12144049 gtgacttaagtcacgcaccactgagcctatgcacgagttaacttgcgcaagttggtcagtgttaaaaactgaagcacaaacgtttcttggacggtagtca 12144148  T
Q  643 atggttttgattggattttacacgtttctcttaagtttttcacacgtttttggacctcattaaatgccatataccttataccacctataaaaaccct 739  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  12144149 atgggtttgattggattttacacgtttttcttaagtttttcacacgtttttggacctcattaagtgccatataccttataccacctatgaaaaccct 12144245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 543 - 738
Target Start/End: Complemental strand, 18172219 - 18172025
Alignment:
Q  543 gtgagttaagttacgcatcactaagcctatgcgtgagttaattgacgcaagttggccagtggtaaaaactgaagcacaaacgtttcttggacggtagtca 642  Q
    |||| |||||| ||||| |||| ||| |||||| ||||||| |  |||||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  18172219 gtgacttaagtcacgcaccactgagcttatgcgcgagttaacttgcgcaagttggtcggtggtaaaaactgaagcacaaacgtttcttggacggtagtca 18172120  T
Q  643 atggttttgattggattttacacgtttctcttaagtttttcacacgtttttggacctcattaaatgccatataccttataccacctataaaaaccc 738  Q
    ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  18172119 atggttttgattggattttacacgttt-tcttaagtttttcacatgtttttggacctcattaagtgctatataccttataccacctataaaaaccc 18172025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 561 - 669
Target Start/End: Original strand, 34954069 - 34954177
Alignment:
Q  561 cactaagcctatgcgtgagttaattgacgcaagttggccagtggtaaaaactgaagcacaaacgtttcttggacggtagtcaatggttttgattggattt 660  Q
    |||| |||||||||| ||||||| |  | |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  34954069 cactgagcctatgcgcgagttaacttgcacaagttggctggtggtaaaaactgaagcacaaacgtttcttggacggtagtcaatggttttaattggattt 34954168  T
Q  661 tacacgttt 669  Q
    |||||||||    
T  34954169 tacacgttt 34954177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 543 - 669
Target Start/End: Original strand, 2786735 - 2786861
Alignment:
Q  543 gtgagttaagttacgcatcactaagcctatgcgtgagttaattgacgcaagttggccagtggtaaaaactgaagcacaaacgtttcttggacggtagtca 642  Q
    |||| |||||| | ||| |||| |||||||||| ||||||| |  |||||||||||| ||||||||||||||||||||||  ||| ||||||||||||||    
T  2786735 gtgacttaagtcatgcaccactgagcctatgcgcgagttaacttgcgcaagttggccggtggtaaaaactgaagcacaaatattttttggacggtagtca 2786834  T
Q  643 atggttttgattggattttacacgttt 669  Q
    ||| ||||||||| |||||||||||||    
T  2786835 atgattttgattgaattttacacgttt 2786861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 479 - 559
Target Start/End: Complemental strand, 1082086 - 1082007
Alignment:
Q  479 gaattctgctcttcaccctgcacattttgctcgcgccctgtacttttttcaattttgaccctgtgtgagttaagttacgca 559  Q
    |||||||||| |||||||||||||||||| |||||||||| ||||||| ||| |||||||||||||||||||||| |||||    
T  1082086 gaattctgctattcaccctgcacattttg-tcgcgccctgcactttttccaaatttgaccctgtgtgagttaagtcacgca 1082007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 671 - 739
Target Start/End: Original strand, 8688213 - 8688281
Alignment:
Q  671 tcttaagtttttcacacgtttttggacctcattaaatgccatataccttataccacctataaaaaccct 739  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||  ||||||||||||||||||||||    
T  8688213 tcttaagtttttcacacgtttttggacctcattaagtgctatatatattataccacctataaaaaccct 8688281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 684 - 739
Target Start/End: Original strand, 2786854 - 2786909
Alignment:
Q  684 acacgtttttggacctcattaaatgccatataccttataccacctataaaaaccct 739  Q
    |||||||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  2786854 acacgtttttggacctcattaagtgtcatataccttataccacctataaaaaccct 2786909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 548 - 733
Target Start/End: Complemental strand, 40034081 - 40033894
Alignment:
Q  548 ttaagttacgcatcactaagcctatgcgtgagttaattgacgcaagttggccagtggtaaaaa-ctgaagcacaaacgtttcttggacggtagtcaatgg 646  Q
    |||||| ||||| |||| ||||| | || ||||||| |  |||||||||| | |||||||||| |||||| ||||| |||| ||||||||| |||||||     
T  40034081 ttaagtcacgcaccactgagcctctacgcgagttaactcgcgcaagttggtcggtggtaaaaaactgaagaacaaatgttttttggacggtggtcaatgc 40033982  T
Q  647 ttttgattggattttacac-gtttctcttaagtttttcacacgtttttggacctcattaaatgccat-ataccttataccacctataaa 733  Q
    |||| ||||| ||||||||  ||| | || |||||||| ||||||||| ||||||||||| ||  ||  ||||||| ||||||||||||    
T  40033981 tttttattgg-ttttacactttttttttttagtttttctcacgtttttagacctcattaagtgaaatgctaccttaaaccacctataaa 40033894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 684 - 739
Target Start/End: Original strand, 34954170 - 34954225
Alignment:
Q  684 acacgtttttggacctcattaaatgccatataccttataccacctataaaaaccct 739  Q
    |||||||||||||||||||||| || ||||||||||||| ||||||||||||||||    
T  34954170 acacgtttttggacctcattaagtgtcatataccttatatcacctataaaaaccct 34954225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 479 - 559
Target Start/End: Complemental strand, 18172334 - 18172254
Alignment:
Q  479 gaattctgctcttcaccctgcacattttgctcgcgccctgtacttttttcaattttgaccctgtgtgagttaagttacgca 559  Q
    ||||| ||||||||||| ||||||||||| |||||||||| || ||||| || | ||||| || ||||||||||| |||||    
T  18172334 gaattttgctcttcaccttgcacattttgttcgcgccctgcacattttttaaatatgaccttgcgtgagttaagtcacgca 18172254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 479 - 518
Target Start/End: Original strand, 8688104 - 8688143
Alignment:
Q  479 gaattctgctcttcaccctgcacattttgctcgcgccctg 518  Q
    |||||||||||||||||||| |||||||||||||| ||||    
T  8688104 gaattctgctcttcaccctgtacattttgctcgcgtcctg 8688143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 479 - 518
Target Start/End: Complemental strand, 13275141 - 13275102
Alignment:
Q  479 gaattctgctcttcaccctgcacattttgctcgcgccctg 518  Q
    ||||||| |||||||||| |||||||||||||||||||||    
T  13275141 gaattctcctcttcaccccgcacattttgctcgcgccctg 13275102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 479 - 514
Target Start/End: Complemental strand, 20887973 - 20887938
Alignment:
Q  479 gaattctgctcttcaccctgcacattttgctcgcgc 514  Q
    |||||||||||| |||||||||||||||||||||||    
T  20887973 gaattctgctctccaccctgcacattttgctcgcgc 20887938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 487 - 553
Target Start/End: Original strand, 2786628 - 2786694
Alignment:
Q  487 ctcttcaccctgcacattttgctcgcgccctgtacttttttcaattttgaccctgtgtgagttaagt 553  Q
    |||||||||||||||||||||||||||| ||| ||| ||| ||| |   |||||| |||||||||||    
T  2786628 ctcttcaccctgcacattttgctcgcgctctgcactctttccaaatacaaccctgcgtgagttaagt 2786694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 543 - 669
Target Start/End: Complemental strand, 43147510 - 43147384
Alignment:
Q  543 gtgagttaagttacgcatcactaagcctatgcgtgagttaattgacgcaagttggccagtggtaaaaactgaagcacaaacgtttcttggacggtagtca 642  Q
    |||| |||||| ||||| |||| ||||| | |  ||||||| |  |||||||||||| |||||||||||||||  |||||  ||| ||| ||| | ||||    
T  43147510 gtgacttaagtcacgcaccactgagcctctacacgagttaactcgcgcaagttggccggtggtaaaaactgaaaaacaaatattttttgaacgatggtca 43147411  T
Q  643 atggttttgattggattttacacgttt 669  Q
    ||  |||| ||||| ||||||||||||    
T  43147410 attcttttcattggtttttacacgttt 43147384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 479 - 516
Target Start/End: Complemental strand, 28784969 - 28784932
Alignment:
Q  479 gaattctgctcttcaccctgcacattttgctcgcgccc 516  Q
    ||||||||||||||| ||||||| ||||||||||||||    
T  28784969 gaattctgctcttcatcctgcactttttgctcgcgccc 28784932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 142; Significance: 4e-74; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 543 - 736
Target Start/End: Complemental strand, 7014858 - 7014665
Alignment:
Q  543 gtgagttaagttacgcatcactaagcctatgcgtgagttaattgacgcaagttggccagtggtaaaaactgaagcacaaacgtttcttggacggtagtca 642  Q
    |||| |||||| ||||| |||||||| |||||| ||||||| |  |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  7014858 gtgacttaagtcacgcaccactaagcatatgcgcgagttaacttgcgcaagttggccggtggtaaaaactgaagcacaaacgtttcttggacggtagtca 7014759  T
Q  643 atggttttgattggattttacacgtttctcttaagtttttcacacgtttttggacctcattaaatgccatataccttataccacctataaaaac 736  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  7014758 atggttttgattgaattttacacgtttttcttaagtttttcacacgtttttggacctcattaagtgtcatataccttataccacctataaaaac 7014665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 543 - 739
Target Start/End: Complemental strand, 33686628 - 33686432
Alignment:
Q  543 gtgagttaagttacgcatcactaagcctatgcgtgagttaattgacgcaagttggccagtggtaaaaactgaagcacaaacgtttcttggacggtagtca 642  Q
    |||| |||||| ||||| |||| |||||||||| ||||||| |  || ||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  33686628 gtgacttaagtcacgcaccactgagcctatgcgcgagttaacttgcgtaagttggccggtggtaaaaactgaagcacaaatgtttcttggacggtagtca 33686529  T
Q  643 atggttttgattggattttacacgtttctcttaagtttttcacacgtttttggacctcattaaatgccatataccttataccacctataaaaaccct 739  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  33686528 atggttttgattggattttacacgtttttcttaagtttttcacacgtttttggacctcattaagtggcatataccttataccacctataaaaaccct 33686432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 543 - 739
Target Start/End: Complemental strand, 43138733 - 43138537
Alignment:
Q  543 gtgagttaagttacgcatcactaagcctatgcgtgagttaattgacgcaagttggccagtggtaaaaactgaagcacaaacgtttcttggacggtagtca 642  Q
    |||| ||||||  |||| |||| |||||||||| ||||||| |  ||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  43138733 gtgatttaagtcgcgcaccactgagcctatgcgcgagttaacttgcgcaaattggccggtgataaaaactgaagcacaaacgtttcttggacggtagtca 43138634  T
Q  643 atggttttgattggattttacacgtttctcttaagtttttcacacgtttttggacctcattaaatgccatataccttataccacctataaaaaccct 739  Q
    |||||||  |||||||||||||| ||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  43138633 atggtttaaattggattttacacatttttcttaagtttttcacacgtttttggacctcattaagtgtcatataccttataccacctataaaaaccct 43138537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 548 - 739
Target Start/End: Original strand, 12926835 - 12927026
Alignment:
Q  548 ttaagttacgcatcactaagcctatgcgtgagttaattgacgcaagttggccagtggtaaaaactgaagcacaaacgtttcttggacggtagtcaatggt 647  Q
    |||||| | ||| |||| |||||||||| ||||||| |  ||||||||||| | ||||||||||||||||||||||||||||||||| ||||| ||||||    
T  12926835 ttaagtcatgcaccactgagcctatgcgcgagttaacttgcgcaagttggctaatggtaaaaactgaagcacaaacgtttcttggacagtagttaatggt 12926934  T
Q  648 tttgattggattttacacgtttctcttaagtttttcacacgtttttggacctcattaaatgccatataccttataccacctataaaaaccct 739  Q
    |||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||    
T  12926935 tttgattgaattttacacgtttttcttaagttttacacacgtttttggacctcattaagtgccgtatatcttataccacctataaaaaccct 12927026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 479 - 739
Target Start/End: Original strand, 15399008 - 15399269
Alignment:
Q  479 gaattctgctcttcaccctgcacattttgctcgcgccctgtacttttttcaattttgaccctgtgtgagttaagttacgcatcactaagcctatgcgtga 578  Q
    ||||| |||||||||||| |||||||| |||| ||||||| |  |||||||| | | | |||| ||||||||||| ||||| |||  || || |||| ||    
T  15399008 gaattttgctcttcacccagcacatttcgctcacgccctgcatgtttttcaaatataatcctgcgtgagttaagtcacgcaccaccgagtctctgcgcga 15399107  T
Q  579 gttaattgacgcaagttggccagtggtaaaaactgaagcacaaacgtttcttggacggtagtcaatggttttgattggattttacac-gtttctcttaag 677  Q
    ||||| | |||||||||||   |||||||||| |||||||||||||||| | ||||||| ||||||| |||||||||| ||||||||  ||| | |||||    
T  15399108 gttaacttacgcaagttggatggtggtaaaaattgaagcacaaacgtttatgggacggttgtcaatgcttttgattggtttttacacttttttttttaag 15399207  T
Q  678 tttttcacacgtttttggacctcattaaatgccatataccttataccacctataaaaaccct 739  Q
    ||||||||||||| |||||||||||||| ||| || ||||||||||||||||||||||||||    
T  15399208 tttttcacacgttgttggacctcattaagtgctatctaccttataccacctataaaaaccct 15399269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 572 - 736
Target Start/End: Original strand, 10308504 - 10308668
Alignment:
Q  572 tgcgtgagttaattgacgcaagttggccagtggtaaaaactgaagcacaaacgtttcttggacggtagtcaatggttttgattggattttacacgtttct 671  Q
    |||||||||||| |  |||||||||||| |||||||| |||||||||||||| |||||   ||||||||||||| ||||||||||| ||||||||||| |    
T  10308504 tgcgtgagttaacttgcgcaagttggccggtggtaaacactgaagcacaaacatttctctaacggtagtcaatgattttgattggactttacacgttttt 10308603  T
Q  672 cttaagtttttcacacgtttttggacctcattaaatgccatataccttataccacctataaaaac 736  Q
    || ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  10308604 ctaaagtttttcacacgtttttggacctcattaagtgctatataccttataccacctataaaaac 10308668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 479 - 669
Target Start/End: Original strand, 49150483 - 49150673
Alignment:
Q  479 gaattctgctcttcaccctgcacattttgctcgcgccctgtacttttttcaattttgaccctgtgtgagttaagttacgcatcactaagcctatgcgtga 578  Q
    ||||| |||||||||||| ||| |||| ||||||| |||| |  |||| ||| | | |||||||||||||||||| ||||| |||| ||||| |||| |     
T  49150483 gaattttgctcttcacccagcatatttcgctcgcgtcctgcatgttttccaaatataaccctgtgtgagttaagtcacgcaccactgagcctctgcgcgc 49150582  T
Q  579 gttaattgacgcaagttggccagtggtaaaaactgaagcacaaacgtttcttggacggtagtcaatggttttgattggattttacacgttt 669  Q
    ||| | |  ||||| |||||| |||||||||||| ||||| |||||||||| ||||||| | ||||| |||||||||  ||||||||||||    
T  49150583 gttgacttgcgcaaattggccggtggtaaaaacttaagcataaacgtttctgggacggtggccaatgcttttgattgatttttacacgttt 49150673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 588 - 739
Target Start/End: Original strand, 30858544 - 30858699
Alignment:
Q  588 cgcaagttggccagtggtaaaaactgaagcacaaacgtttcttggacggtagtcaatggttttgattggattttacacgtttctctt---aagtttttca 684  Q
    |||||||||||| ||||| ||| |||||| |||||||||| || |||| | ||||||| |||| ||||| |||||||||||| | ||   |||||||||     
T  30858544 cgcaagttggccggtggtcaaagctgaagaacaaacgttttttagacgatggtcaatgctttttattgggttttacacgttttttttaaaaagtttttct 30858643  T
Q  685 cacgtttttggacctcattaaatgccat-ataccttataccacctataaaaaccct 739  Q
    |||||||||||| |||||||| ||| ||  ||||||| |||||||||||| |||||    
T  30858644 cacgtttttggatctcattaagtgctatgctaccttaaaccacctataaataccct 30858699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 548 - 705
Target Start/End: Complemental strand, 1671405 - 1671248
Alignment:
Q  548 ttaagttacgcatcactaagcctatgcgtgagttaattgacgcaagttggccagtggtaaaaactgaagcacaaacgtttcttggacggtagtcaatggt 647  Q
    |||||| ||| | |||| ||||| |||| |||||||   ||||||||||| | ||||| |||||||||| |||||||||| ||||||||| ||||||| |    
T  1671405 ttaagtcacgaaccactgagcctctgcgcgagttaacgcacgcaagttggtcggtggtcaaaactgaagaacaaacgttt-ttggacggtggtcaatgct 1671307  T
Q  648 tttgattggattttacacgt-ttctcttaagtttttcacacgtttttggacctcattaa 705  Q
    ||| ||||  |||||||  | || | |||| |||||| |||||||||||||||||||||    
T  1671306 ttttattgatttttacatttatttttttaaatttttctcacgtttttggacctcattaa 1671248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 588 - 705
Target Start/End: Original strand, 22605486 - 22605604
Alignment:
Q  588 cgcaagttggccagtggtaaaaactgaagcacaaacgtttcttggacggtagtcaatggttttgattggattttacacg-tttctcttaagtttttcaca 686  Q
    |||||||| ||| |||||||||||||||| | | |||||| ||||||||| |||| || |||| ||||| | ||||||| ||| | ||||||||||| ||    
T  22605486 cgcaagttagccggtggtaaaaactgaagaatatacgttttttggacggtggtcattgctttttattggttcttacacgtttttttttaagtttttctca 22605585  T
Q  687 cgtttttggacctcattaa 705  Q
    |||||||||| ||||||||    
T  22605586 cgtttttggatctcattaa 22605604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 479 - 559
Target Start/End: Original strand, 10308361 - 10308441
Alignment:
Q  479 gaattctgctcttcaccctgcacattttgctcgcgccctgtacttttttcaattttgaccctgtgtgagttaagttacgca 559  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||  || | | |||||| ||||||||||| |||||    
T  10308361 gaattctgctcttcaccctgcacattttgctcgcgccctgcacattttctaaatataaccctgcgtgagttaagtcacgca 10308441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 479 - 559
Target Start/End: Original strand, 12926715 - 12926795
Alignment:
Q  479 gaattctgctcttcaccctgcacattttgctcgcgccctgtacttttttcaattttgaccctgtgtgagttaagttacgca 559  Q
    ||||| |||||||||||||||||||||||||| ||||||| ||||||| ||| | | |||||| ||||||||||| |||||    
T  12926715 gaattttgctcttcaccctgcacattttgctcccgccctgcactttttccaaatataaccctgcgtgagttaagtcacgca 12926795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 679 - 739
Target Start/End: Original strand, 49150661 - 49150721
Alignment:
Q  679 ttttcacacgtttttggacctcattaaatgccatataccttataccacctataaaaaccct 739  Q
    |||| |||||||||||||||||||||| ||| || ||||||||||||||||||||||||||    
T  49150661 tttttacacgtttttggacctcattaagtgctatctaccttataccacctataaaaaccct 49150721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 479 - 518
Target Start/End: Original strand, 46923665 - 46923704
Alignment:
Q  479 gaattctgctcttcaccctgcacattttgctcgcgccctg 518  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  46923665 gaattctgctcttcaccctgcacattttgctcgcgccctg 46923704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 479 - 518
Target Start/End: Complemental strand, 48569474 - 48569435
Alignment:
Q  479 gaattctgctcttcaccctgcacattttgctcgcgccctg 518  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  48569474 gaattctgctcttcaccctgcacattttgctcgcgccctg 48569435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 479 - 559
Target Start/End: Complemental strand, 33686743 - 33686663
Alignment:
Q  479 gaattctgctcttcaccctgcacattttgctcgcgccctgtacttttttcaattttgaccctgtgtgagttaagttacgca 559  Q
    ||||||||||||||| ||||||||||||||||||| |||| ||||||| ||| | | |  ||| ||||||||||| |||||    
T  33686743 gaattctgctcttcatcctgcacattttgctcgcgtcctgcactttttccaaatataattctgcgtgagttaagtcacgca 33686663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 479 - 518
Target Start/End: Original strand, 18169182 - 18169221
Alignment:
Q  479 gaattctgctcttcaccctgcacattttgctcgcgccctg 518  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  18169182 gaattctgctcttcaccctgcacattttgctcgcaccctg 18169221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 479 - 518
Target Start/End: Complemental strand, 23943717 - 23943678
Alignment:
Q  479 gaattctgctcttcaccctgcacattttgctcgcgccctg 518  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  23943717 gaattctgctcttcaccctgcacattttgcttgcgccctg 23943678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 479 - 518
Target Start/End: Original strand, 30308266 - 30308305
Alignment:
Q  479 gaattctgctcttcaccctgcacattttgctcgcgccctg 518  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  30308266 gaattcagctcttcaccctgcacattttgctcgcgccctg 30308305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 479 - 518
Target Start/End: Original strand, 39222590 - 39222629
Alignment:
Q  479 gaattctgctcttcaccctgcacattttgctcgcgccctg 518  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  39222590 gaattttgctcttcaccctgcacattttgctcgcgccctg 39222629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 679 - 736
Target Start/End: Complemental strand, 45053425 - 45053368
Alignment:
Q  679 ttttcacacgtttttggacctcattaaatgccatataccttataccacctataaaaac 736  Q
    ||||||||||||||||||||| ||||| ||  || ||| |||||||||||||||||||    
T  45053425 ttttcacacgtttttggaccttattaagtgttatctacattataccacctataaaaac 45053368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 479 - 520
Target Start/End: Complemental strand, 49000892 - 49000851
Alignment:
Q  479 gaattctgctcttcaccctgcacattttgctcgcgccctgta 520  Q
    ||||| |||||||||||| |||||||||||||||||||||||    
T  49000892 gaattttgctcttcacccagcacattttgctcgcgccctgta 49000851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 479 - 518
Target Start/End: Complemental strand, 7015098 - 7015059
Alignment:
Q  479 gaattctgctcttcaccctgcacattttgctcgcgccctg 518  Q
    |||||||||||| ||||| |||||||||||||||||||||    
T  7015098 gaattctgctctccacccagcacattttgctcgcgccctg 7015059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 479 - 517
Target Start/End: Complemental strand, 16315433 - 16315395
Alignment:
Q  479 gaattctgctcttcaccctgcacattttgctcgcgccct 517  Q
    |||| ||||||| ||||||||||||||||||||||||||    
T  16315433 gaatcctgctctccaccctgcacattttgctcgcgccct 16315395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 479 - 517
Target Start/End: Original strand, 33296425 - 33296463
Alignment:
Q  479 gaattctgctcttcaccctgcacattttgctcgcgccct 517  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  33296425 gaattctgctcttcatccagcacattttgctcgcgccct 33296463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 479 - 517
Target Start/End: Complemental strand, 49599902 - 49599864
Alignment:
Q  479 gaattctgctcttcaccctgcacattttgctcgcgccct 517  Q
    |||||||||||  ||||||||||||||||||||||||||    
T  49599902 gaattctgctccacaccctgcacattttgctcgcgccct 49599864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 485 - 518
Target Start/End: Complemental strand, 9355500 - 9355467
Alignment:
Q  485 tgctcttcaccctgcacattttgctcgcgccctg 518  Q
    |||||| |||||||||||||||||||||||||||    
T  9355500 tgctctccaccctgcacattttgctcgcgccctg 9355467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 141; Significance: 2e-73; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 543 - 739
Target Start/End: Complemental strand, 34619985 - 34619789
Alignment:
Q  543 gtgagttaagttacgcatcactaagcctatgcgtgagttaattgacgcaagttggccagtggtaaaaactgaagcacaaacgtttcttggacggtagtca 642  Q
    |||| |||||| |||||  ||| |||||||||| ||||||| |  | |||||||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  34619985 gtgacttaagtcacgcactactgagcctatgcgcgagttaacttgcacaagttggccggtgataaaaactgaagcacaaacgtttcttggacggtagtca 34619886  T
Q  643 atggttttgattggattttacacgtttctcttaagtttttcacacgtttttggacctcattaaatgccatataccttataccacctataaaaaccct 739  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  34619885 atggttttgattggattttacacgtttttcttaagtttttcacacgtttttggacctcattaagtgccatataccttataccacctataaaaaccct 34619789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 133; E-Value: 9e-69
Query Start/End: Original strand, 539 - 739
Target Start/End: Complemental strand, 41192471 - 41192271
Alignment:
Q  539 ctgtgtgagttaagttacgcatcactaagcctatgcgtgagttaattgacgcaagttggccagtggtaaaaactgaagcacaaacgtttcttggacggta 638  Q
    |||||||| |||||| || || |||| |||||||| | ||||||| |  |||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  41192471 ctgtgtgacttaagtcacacaccactgagcctatgtgcgagttaacttgcgcaagttggccggtggtaaaaactaaagcacaaacgtttcttggacggta 41192372  T
Q  639 gtcaatggttttgattggattttacacgtttctcttaagtttttcacacgtttttggacctcattaaatgccatataccttataccacctataaaaaccc 738  Q
    ||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  41192371 gtcaatggttttgattggattttacacgtttttcttaagtttctcacacgcttttggatctcattaagtgccatataccttataccacctataaaaaccc 41192272  T
Q  739 t 739  Q
    |    
T  41192271 t 41192271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 561 - 739
Target Start/End: Original strand, 6728639 - 6728817
Alignment:
Q  561 cactaagcctatgcgtgagttaattgacgcaagttggccagtggtaaaaactgaagcacaaacgtttcttggacggtagtcaatggttttgattggattt 660  Q
    |||| |||||||||| ||||||| |  |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  6728639 cactgagcctatgcgcgagttaacttgcgcaagttggccggtggtaaaaactgaagcacagacgtttcttggacggtagtcaatggttttaattggattt 6728738  T
Q  661 tacacgtttctcttaagtttttcacacgtttttggacctcattaaatgccatataccttataccacctataaaaaccct 739  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||    
T  6728739 tacacgtttttcttaagtttttcacacgtttttggacctaattaagtgtcatataccttataccacctataaaaaccct 6728817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 543 - 739
Target Start/End: Complemental strand, 32737956 - 32737760
Alignment:
Q  543 gtgagttaagttacgcatcactaagcctatgcgtgagttaattgacgcaagttggccagtggtaaaaactgaagcacaaacgtttcttggacggtagtca 642  Q
    |||| |||||| ||||| |||| ||||| |||||||||||| |  ||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  32737956 gtgacttaagtcacgcaccactgagcctctgcgtgagttaacttgcgcaagttggccgatggtaaaaactgaagcacaaacgtttcttggacggtagtca 32737857  T
Q  643 atggttttgattggattttacacgtttctcttaagtttttcacacgtttttggacctcattaaatgccatataccttataccacctataaaaaccct 739  Q
    |||||||||||||| ||||||||||||  ||||||||||||||| |||||||||||||||||| ||| |||||| ||||||||||||||||||||||    
T  32737856 atggttttgattggtttttacacgttttccttaagtttttcacatgtttttggacctcattaagtgctatatactttataccacctataaaaaccct 32737760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 128; E-Value: 9e-66
Query Start/End: Original strand, 548 - 735
Target Start/End: Complemental strand, 5814614 - 5814427
Alignment:
Q  548 ttaagttacgcatcactaagcctatgcgtgagttaattgacgcaagttggccagtggtaaaaactgaagcacaaacgtttcttggacggtagtcaatggt 647  Q
    |||||| |||||  ||| ||||||| || ||||||| |  |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  5814614 ttaagtcacgcactactgagcctatacgcgagttaacttgcgcaagttggccggtggtaaaaactgaagcacaaacgtttcttggacggtagtcaatggt 5814515  T
Q  648 tttgattggattttacacgtttctcttaagtttttcacacgtttttggacctcattaaatgccatataccttataccacctataaaaa 735  Q
    |||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  5814514 tttgattgaattttacacgtttttcttaaatttttcacacgtttttggacctcattaagtgtcatataccttataccacctataaaaa 5814427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 570 - 739
Target Start/End: Original strand, 1887948 - 1888117
Alignment:
Q  570 tatgcgtgagttaattgacgcaagttggccagtggtaaaaactgaagcacaaacgtttcttggacggtagtcaatggttttgattggattttacacgttt 669  Q
    |||||| ||||||| |  ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  1887948 tatgcgcgagttaacttgcgcaagttgcccggtggtaaaaactgaagcacaaacgtttcttggacggtagtcaatggttttgattgatttttacacgttt 1888047  T
Q  670 ctcttaagtttttcacacgtttttggacctcattaaatgccatataccttataccacctataaaaaccct 739  Q
     ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  1888048 ttcttaagtttttcacacgtttttggacctcattaagtgctatataccttataccacctataaaaaccct 1888117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 588 - 739
Target Start/End: Original strand, 21083816 - 21083966
Alignment:
Q  588 cgcaagttggccagtggtaaaaactgaagcacaaacgtttcttggacggtagtcaatggttttgattggattttacacgtttctcttaagtttttcacac 687  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||| |||||| ||||||||||    
T  21083816 cgcaagttggccggtggtaaaa-ctgaagcacaaacgtttcttggacggtagtcaatgattttaattggtttttacacgtttttcttaaatttttcacac 21083914  T
Q  688 gtttttggacctcattaaatgccatataccttataccacctataaaaaccct 739  Q
    |||||||||||||||||| ||  |||||||||||||||||||||||||||||    
T  21083915 gtttttggacctcattaagtgttatataccttataccacctataaaaaccct 21083966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 543 - 739
Target Start/End: Complemental strand, 5290784 - 5290587
Alignment:
Q  543 gtgagttaagttacgcatcactaagcctatgcgtgagttaattgacgcaagttggccagtggtaaaaactgaagcacaaacgtttcttggacggtagtca 642  Q
    |||| |||||| ||||| |||| |||||||||||||||||| |  |||||||||| | ||||||||||||||| |||| |||||||| ||||||| ||||    
T  5290784 gtgacttaagtcacgcaccactgagcctatgcgtgagttaactcgcgcaagttggacggtggtaaaaactgaaacacagacgtttct-ggacggtggtca 5290686  T
Q  643 atggttttgattggattttacacgtttctctt--aagtttttcacacgtttttggacctcattaaatgccatataccttataccacctataaaaaccct 739  Q
    ||| |||||||||| |||||||||||| | ||  |||| |||||||||||||||||||||||||| ||  || ||||||||||||||||||||||||||    
T  5290685 atgcttttgattggtttttacacgttttttttttaagtgtttcacacgtttttggacctcattaagtgttatctaccttataccacctataaaaaccct 5290587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 588 - 739
Target Start/End: Complemental strand, 26257814 - 26257663
Alignment:
Q  588 cgcaagttggccagtggtaaaaactgaagcacaaacgtttcttggacggtagtcaatggttttgattggattttacacgtttctctt-aagtttttcaca 686  Q
    |||||||| | | ||||||||||||||||||||||||||||| ||| ||| ||||||| |||||||||| |||||||||||| | || ||||||||||||    
T  26257814 cgcaagttagacggtggtaaaaactgaagcacaaacgtttct-ggatggtggtcaatgcttttgattggtttttacacgtttttttttaagtttttcaca 26257716  T
Q  687 cgtttttggacctcattaaatgccatataccttataccacctataaaaaccct 739  Q
    ||||||||||| ||||||| ||| || ||| ||||||||||||||||||||||    
T  26257715 cgtttttggacatcattaagtgctatctactttataccacctataaaaaccct 26257663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 645 - 739
Target Start/End: Complemental strand, 35151511 - 35151417
Alignment:
Q  645 ggttttgattggattttacacgtttctcttaagtttttcacacgtttttggacctcattaaatgccatataccttataccacctataaaaaccct 739  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  35151511 ggttttgattggattttacgcgtttttcttaagtttttcacacgtttttggacctcattaagtgccatataccttataacacctataaaaaccct 35151417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 543 - 736
Target Start/End: Complemental strand, 4616722 - 4616535
Alignment:
Q  543 gtgagttaagttacgcatcactaagcctatgcgtgagttaattgacgcaagttggccagtggtaaaaactgaagcacaaacgtttcttggacggtagtca 642  Q
    |||| |||||| ||||  |||| ||||| | || ||||||| |  |||||||||||| ||||||||||||||||||||||||||| | ||||||| ||||    
T  4616722 gtgacttaagtcacgccccactgagcctctacgcgagttaacttgcgcaagttggccggtggtaaaaactgaagcacaaacgtttttgggacggtggtca 4616623  T
Q  643 atggttttgattggattttacacgtttctcttaagtttttcacacgtttttggacctcattaaatgccatataccttataccacctataaaaac 736  Q
    ||| |||||||||  |||||||||||| |      |||| |||||||||||| |||||||||| ||  || |||||||||||||||| ||||||    
T  4616622 atgcttttgattgctttttacacgttttt------ttttccacacgtttttgaacctcattaagtgttatctaccttataccacctagaaaaac 4616535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 478 - 559
Target Start/End: Complemental strand, 34620082 - 34620001
Alignment:
Q  478 ggaattctgctcttcaccctgcacattttgctcgcgccctgtacttttttcaattttgaccctgtgtgagttaagttacgca 559  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| ||| | | |||||| ||||||||||| |||||    
T  34620082 ggaattctgctcttcaccctgcacattttgctcgcgccctgcactttttccaaatataaccctgcgtgagttaagtcacgca 34620001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 543 - 739
Target Start/End: Original strand, 37057202 - 37057411
Alignment:
Q  543 gtgagttaagttacgcatcactaagcctatgcgtgagttaattgacgcaagttggccagtggtaaaaactgaagcacaaacgtttcttggacggtagtca 642  Q
    |||| |||||| ||||| ||||||| || | || ||||||| | | ||||||| |   ||||||||||||||||||||||||||| | ||||||| ||||    
T  37057202 gtgacttaagtcacgcaccactaagtctttacgcgagttaacttatgcaagttagttggtggtaaaaactgaagcacaaacgtttttgggacggtggtca 37057301  T
Q  643 atggttttgattggattttacacg-------------tttctcttaagtttttcacacgtttttggacctcattaaatgccatataccttataccaccta 729  Q
    ||| |||||||||| ||||||| |             ||| | ||||||||||||||| || |||||||||||||| ||| || ||||||||||||||||    
T  37057302 atgcttttgattggtttttacaagtttttttttttttttttttttaagtttttcacaccttattggacctcattaagtgctatctaccttataccaccta 37057401  T
Q  730 taaaaaccct 739  Q
     |||||||||    
T  37057402 caaaaaccct 37057411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 479 - 559
Target Start/End: Complemental strand, 41192582 - 41192502
Alignment:
Q  479 gaattctgctcttcaccctgcacattttgctcgcgccctgtacttttttcaattttgaccctgtgtgagttaagttacgca 559  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||||| ||| | | |||||| ||||||||||| |||||    
T  41192582 gaattctgctcttcaccctgcacattttgttcgcgccctgcactttttccaaatataaccctgcgtgagttaagtcacgca 41192502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 588 - 705
Target Start/End: Complemental strand, 2195206 - 2195089
Alignment:
Q  588 cgcaagttggccagtggtaaaaactgaagcacaaacgtttcttggacggtagtcaatggttttgattggattttacacgtttctctt-aagtttttcaca 686  Q
    |||||||| |||  ||||||||||| ||| |||||||||| ||||||||| ||||||| |||| ||||  |||||||||||| | || ||||||||| ||    
T  2195206 cgcaagttagccgatggtaaaaactaaagaacaaacgttt-ttggacggtggtcaatgctttttattgatttttacacgtttttttttaagtttttctca 2195108  T
Q  687 cgtttttggacctcattaa 705  Q
     ||||||||||||||||||    
T  2195107 tgtttttggacctcattaa 2195089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 479 - 518
Target Start/End: Complemental strand, 42242151 - 42242112
Alignment:
Q  479 gaattctgctcttcaccctgcacattttgctcgcgccctg 518  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  42242151 gaatactgctcttcaccctgcacattttgctcgcgccctg 42242112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 479 - 518
Target Start/End: Original strand, 43837507 - 43837546
Alignment:
Q  479 gaattctgctcttcaccctgcacattttgctcgcgccctg 518  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  43837507 gaatactgctcttcaccctgcacattttgctcgcgccctg 43837546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 479 - 559
Target Start/End: Complemental strand, 5814735 - 5814655
Alignment:
Q  479 gaattctgctcttcaccctgcacattttgctcgcgccctgtacttttttcaattttgaccctgtgtgagttaagttacgca 559  Q
    ||||| |||| || ||||| ||||||||| | |||||||| ||||||||||| | | |||||| ||||||||||| |||||    
T  5814735 gaattttgctttttaccctacacattttgtttgcgccctgcacttttttcaaatataaccctgcgtgagttaagtcacgca 5814655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 479 - 559
Target Start/End: Original strand, 21083656 - 21083736
Alignment:
Q  479 gaattctgctcttcaccctgcacattttgctcgcgccctgtacttttttcaattttgaccctgtgtgagttaagttacgca 559  Q
    |||||||||| |||| |||||| |||||||| |||||||  || |||||||| | | |||||| ||||||||||| |||||    
T  21083656 gaattctgctattcatcctgcatattttgcttgcgccctacacatttttcaaatataaccctgcgtgagttaagtcacgca 21083736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 480 - 558
Target Start/End: Complemental strand, 4616836 - 4616758
Alignment:
Q  480 aattctgctcttcaccctgcacattttgctcgcgccctgtacttttttcaattttgaccctgtgtgagttaagttacgc 558  Q
    |||| |||| ||||||| |||||||| |||||||||||| |  |||||||| | | ||| |||||||||||||| ||||    
T  4616836 aattttgcttttcacccagcacatttcgctcgcgccctgcatgtttttcaaatataaccatgtgtgagttaagtcacgc 4616758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 479 - 516
Target Start/End: Complemental strand, 5848203 - 5848166
Alignment:
Q  479 gaattctgctcttcaccctgcacattttgctcgcgccc 516  Q
    |||||||||| | |||||||||||||||||||||||||    
T  5848203 gaattctgctatccaccctgcacattttgctcgcgccc 5848166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 479 - 512
Target Start/End: Original strand, 32733934 - 32733967
Alignment:
Q  479 gaattctgctcttcaccctgcacattttgctcgc 512  Q
    ||||||||||||||||| ||||||||||||||||    
T  32733934 gaattctgctcttcaccatgcacattttgctcgc 32733967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 139; Significance: 2e-72; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 561 - 735
Target Start/End: Complemental strand, 3742436 - 3742262
Alignment:
Q  561 cactaagcctatgcgtgagttaattgacgcaagttggccagtggtaaaaactgaagcacaaacgtttcttggacggtagtcaatggttttgattggattt 660  Q
    |||| |||||||||||||||||| |  |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  3742436 cactgagcctatgcgtgagttaacttgcgcaagttggccggtggtaaaaactgaagcacaaacgtttcttggacggtagtcaatgattttgattagattt 3742337  T
Q  661 tacacgtttctcttaagtttttcacacgtttttggacctcattaaatgccatataccttataccacctataaaaa 735  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3742336 tacacgtttttcttaagtttttcacatgtttttggacctcattaaatgccatataccttataccacctataaaaa 3742262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 537 - 736
Target Start/End: Complemental strand, 4035242 - 4035043
Alignment:
Q  537 ccctgtgtgagttaagttacgcatcactaagcctatgcgtgagttaattgacgcaagttggccagtggtaaaaactgaagcacaaacgtttcttggacgg 636  Q
    ||||| |||| |||||| ||||| |||| |||||||||| ||||||| |  |||||||||||| |||||||||||||||||||||| ||||||| |||||    
T  4035242 ccctgcgtgacttaagtcacgcaccactgagcctatgcgcgagttaacttgcgcaagttggccggtggtaaaaactgaagcacaaatgtttcttagacgg 4035143  T
Q  637 tagtcaatggttttgattggattttacacgtttctcttaagtttttcacacgtttttggacctcattaaatgccatataccttataccacctataaaaac 736  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||  |||||||||||||||||    
T  4035142 tagtcaatggttttgattggattttacacgtttttcttaagtttttcacacgtttttggacctcattaagtgccatataccacataccacctataaaaac 4035043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 128; E-Value: 9e-66
Query Start/End: Original strand, 543 - 734
Target Start/End: Original strand, 37450005 - 37450195
Alignment:
Q  543 gtgagttaagttacgcatcactaagcctatgcgtgagttaattgacgcaagttggccagtggtaaaaactgaagcacaaacgtttcttggacggtagtca 642  Q
    |||| ||||||  ||||||||| |||||||||  ||||||| |  ||||||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  37450005 gtgacttaagtcgcgcatcactgagcctatgcacgagttaacttgcgcaagttgaccggtggtaaaaactgaagcacaaacgtttcttggacggtagtca 37450104  T
Q  643 atggttttgattggattttacacgtttctcttaagtttttcacacgtttttggacctcattaaatgccatataccttataccacctataaaa 734  Q
    |||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  37450105 atggttttaattggattttacacgtttttctt-agtttttcacacgtttttggacctcattaagtgccatataccttataccacctataaaa 37450195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 543 - 739
Target Start/End: Original strand, 14678307 - 14678503
Alignment:
Q  543 gtgagttaagttacgcatcactaagcctatgcgtgagttaattgacgcaagttggccagtggtaaaaactgaagcacaaacgtttcttggacggtagtca 642  Q
    |||| |||||| ||||| |||| ||||| || ||||||||| |  |||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||    
T  14678307 gtgacttaagtcacgcaccactgagcctctgtgtgagttaacttgcgcaagttggccggtggtaaaaactgcagcacaaacgtttcttggacggtggtca 14678406  T
Q  643 atggttttgattggattttacacgtttctcttaagtttttcacacgtttttggacctcattaaatgccatataccttataccacctataaaaaccct 739  Q
    |||||||||||||  |||||||||||| | ||||||||||||||| ||||| ||||||||||| ||| || ||||||||||||||||||||||||||    
T  14678407 atggttttgattgatttttacacgtttttattaagtttttcacacatttttagacctcattaagtgctatctaccttataccacctataaaaaccct 14678503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 588 - 739
Target Start/End: Complemental strand, 40144822 - 40144671
Alignment:
Q  588 cgcaagttggccagtggtaaaaactgaagcacaaacgtttcttggacggtagtcaatggttttgattggattttacacgtttctcttaagtttttcacac 687  Q
    |||||||||||| |||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||| |||| |||||||||||||| ||    
T  40144822 cgcaagttggccggtggtaaaaactgaagcacaaacgttccttgaaccgtagtcaatggttttgattggattttacatgtttttcttaagtttttcaaac 40144723  T
Q  688 gtttttggacctcattaaatgccatataccttataccacctataaaaaccct 739  Q
    |||||||||||||||||| || ||||||| ||||||||||||||||||||||    
T  40144722 gtttttggacctcattaagtgtcatatacgttataccacctataaaaaccct 40144671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 543 - 739
Target Start/End: Original strand, 39283992 - 39284188
Alignment:
Q  543 gtgagttaagttacgcatcactaagcctatgcgtgagttaattgacgcaagttggccagtggtaaaaactgaagcacaaacgtttcttggacggtagtca 642  Q
    |||| |||||| ||||| |||| ||||| | || |||||||||  |||||||||| | ||||||||||||||||||||||||||| | ||||||| ||||    
T  39283992 gtgacttaagtcacgcaccactgagcctctacgcgagttaatttgcgcaagttggtcggtggtaaaaactgaagcacaaacgtttttgggacggtggtca 39284091  T
Q  643 atggttttgattggattttacacgtttctcttaagtttttcacacgtttttggacctcattaaatgccatataccttataccacctataaaaaccct 739  Q
    ||| |||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||| ||  || ||||||||||||||||| ||||||||    
T  39284092 atgcttttgattggcttttacacgtttttctaaagtttttcacacgtttttggacctcattaagtgttatctaccttataccacctattaaaaccct 39284188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 479 - 559
Target Start/End: Complemental strand, 4035351 - 4035271
Alignment:
Q  479 gaattctgctcttcaccctgcacattttgctcgcgccctgtacttttttcaattttgaccctgtgtgagttaagttacgca 559  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||||| | | |||||| ||||||||||| |||||    
T  4035351 gaattctgctcttcaccctgcacattttgctcgcgccctacacttttttcaaatataaccctgcgtgagttaagtcacgca 4035271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 478 - 514
Target Start/End: Complemental strand, 23943840 - 23943804
Alignment:
Q  478 ggaattctgctcttcaccctgcacattttgctcgcgc 514  Q
    |||||||||||||||||||||||||||||||||||||    
T  23943840 ggaattctgctcttcaccctgcacattttgctcgcgc 23943804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 479 - 515
Target Start/End: Original strand, 39476416 - 39476452
Alignment:
Q  479 gaattctgctcttcaccctgcacattttgctcgcgcc 515  Q
    |||||||||||||||||||||||||||||||||||||    
T  39476416 gaattctgctcttcaccctgcacattttgctcgcgcc 39476452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 588 - 669
Target Start/End: Original strand, 33802990 - 33803071
Alignment:
Q  588 cgcaagttggccagtggtaaaaactgaagcacaaacgtttctt-ggacggtagtcaatggttttgattggattttacacgttt 669  Q
    ||||||||| || ||||| |||||||||| |||||||||| || ||||||| ||||||| |||| ||||| ||||||||||||    
T  33802990 cgcaagttg-ccggtggtcaaaactgaagaacaaacgtttttttggacggtggtcaatgctttttattggtttttacacgttt 33803071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 543 - 627
Target Start/End: Original strand, 8260882 - 8260966
Alignment:
Q  543 gtgagttaagttacgcatcactaagcctatgcgtgagttaattgacgcaagttggccagtggtaaaaactgaagcacaaacgttt 627  Q
    |||| |||||| ||||| |||| ||||| |||| ||||||| | ||||||||||||| ||||| | |||||| | ||||||||||    
T  8260882 gtgacttaagtcacgcaccactgagcctttgcgcgagttaactcacgcaagttggccggtggtcagaactgatgaacaaacgttt 8260966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 479 - 519
Target Start/End: Original strand, 18236719 - 18236759
Alignment:
Q  479 gaattctgctcttcaccctgcacattttgctcgcgccctgt 519  Q
    ||||||||||||||| |||||| ||||||||||||||||||    
T  18236719 gaattctgctcttcatcctgcatattttgctcgcgccctgt 18236759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 479 - 520
Target Start/End: Original strand, 47441554 - 47441595
Alignment:
Q  479 gaattctgctcttcaccctgcacattttgctcgcgccctgta 520  Q
    ||||| ||||||||||||||||| ||||||||||| ||||||    
T  47441554 gaattatgctcttcaccctgcactttttgctcgcgtcctgta 47441595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 133; Significance: 9e-69; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 133; E-Value: 9e-69
Query Start/End: Original strand, 543 - 735
Target Start/End: Original strand, 20096 - 20288
Alignment:
Q  543 gtgagttaagttacgcatcactaagcctatgcgtgagttaattgacgcaagttggccagtggtaaaaactgaagcacaaacgtttcttggacggtagtca 642  Q
    |||| |||||| ||||| |||| |||||||||| ||||||| |  |||||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  20096 gtgacttaagtcacgcaccactgagcctatgcgcgagttaacttgcgcaagttggccggtggtaaaaattgaagcacaaacgtttcttggacggtagtca 20195  T
Q  643 atggttttgattggattttacacgtttctcttaagtttttcacacgtttttggacctcattaaatgccatataccttataccacctataaaaa 735  Q
    ||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  20196 atggttttgattggattttacacgtttttcttaagcttttcgcacgtttttggacctcattaagtgccatataccttatacaacctataaaaa 20288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 129; Significance: 2e-66; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 543 - 739
Target Start/End: Original strand, 52789398 - 52789594
Alignment:
Q  543 gtgagttaagttacgcatcactaagcctatgcgtgagttaattgacgcaagttggccagtggtaaaaactgaagcacaaacgtttcttggacggtagtca 642  Q
    |||| |||||| ||||| |||| |||||||||| ||||||| |  |||||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  52789398 gtgacttaagtcacgcaccactgagcctatgcgcgagttaacttgcgcaagttggtcggtggtaaaaactgaagcacaaacgtttcttggacggtagtca 52789497  T
Q  643 atggttttgattggattttacacgtttctcttaagtttttcacacgtttttggacctcattaaatgccatataccttataccacctataaaaaccct 739  Q
    |||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||| |||||||  |||||||||||| ||||||||||||||||    
T  52789498 atggttttgattggtttttacacgtttttcttaagttgttcacacgtttttggacctctttaaatgatatataccttataacacctataaaaaccct 52789594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 540 - 739
Target Start/End: Complemental strand, 54809091 - 54808892
Alignment:
Q  540 tgtgtgagttaagttacgcatcactaagcctatgcgtgagttaattgacgcaagttggccagtggtaaaaactgaagcacaaacgtttcttggacggtag 639  Q
    ||||||| ||||||  | || |||| |||||||||| ||||||| |  |||||||||||| ||||||||||||||| ||||||| |||||||||||||||    
T  54809091 tgtgtgacttaagtcgcacaccactgagcctatgcgcgagttaacttgcgcaagttggccggtggtaaaaactgaaccacaaacatttcttggacggtag 54808992  T
Q  640 tcaatggttttgattggattttacacgtttctcttaagtttttcacacgtttttggacctcattaaatgccatataccttataccacctataaaaaccct 739  Q
    ||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||| || |||||||||||||||||| |||||||||||    
T  54808991 tcaatggttttaattggattttacacgtttttcttaagtttttctcacgtttttggacctcattaagtgtcatataccttataccaccaataaaaaccct 54808892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 479 - 739
Target Start/End: Original strand, 51242740 - 51243010
Alignment:
Q  479 gaattctgctcttcaccctgcacattttgctcgcgccctgtacttttttcaattttgaccc---------tgtgtgagttaagttacgcatcactaagcc 569  Q
    |||||||||| |||||||| ||||||||||||||||||||| |||||||||| | | |||          ||||||| ||| || || || |||| ||||    
T  51242740 gaattctgcttttcaccctacacattttgctcgcgccctgtgcttttttcaaatataacctgataagctttgtgtgacttatgtgacacaccactgagcc 51242839  T
Q  570 tatgcgtgagttaattgacgcaagttggccagtggtaaaaactgaagcacaaacgtttcttggacggtagtcaatggttttgattggattttacacgttt 669  Q
    |||||| ||||||| |  |||||||||||| ||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  51242840 tatgcgcgagttaacttgcgcaagttggccggtggtcaaaactgaagcataaacgttttttggacggtagtcaatggttttgattggattttacacgttt 51242939  T
Q  670 ctcttaagtttttcacacgtttttggacctcattaaatgccatatacctt-ataccacctataaaaaccct 739  Q
     ||||||||||||||||| |||| |||||||||||| || | |||||||| |||||||||||||| |||||    
T  51242940 ttcttaagtttttcacacattttcggacctcattaagtgtcgtataccttaataccacctataaataccct 51243010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 588 - 736
Target Start/End: Complemental strand, 36046945 - 36046797
Alignment:
Q  588 cgcaagttggccagtggtaaaaactgaagcacaaacgtttcttggacggtagtcaatggttttgattggattttacacgtttctcttaagtttttcacac 687  Q
    |||||||||| | ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||||||     
T  36046945 cgcaagttggtcggtggtaaaaactgaaacacaaacgtttcttggacagtagtcaatggttttgattggattttacacgttttacttaagtttttcacat 36046846  T
Q  688 gtttttggacctcattaaatgccatataccttataccacctataaaaac 736  Q
    |||||||||||||||||| || |||||||||||||||||||||||||||    
T  36046845 gtttttggacctcattaagtgtcatataccttataccacctataaaaac 36046797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 555 - 736
Target Start/End: Complemental strand, 34939431 - 34939250
Alignment:
Q  555 acgcatcactaagcctatgcgtgagttaattgacgcaagttggccagtggtaaaaactgaagcacaaacgtttcttggacggtagtcaatggttttgatt 654  Q
    ||||| |||| |||||||||| ||||||| |  |||||||||||| ||||||||||||| ||||||||||||||||| ||||| |||||| |||||||||    
T  34939431 acgcaacactgagcctatgcgcgagttaacttccgcaagttggccggtggtaaaaactgcagcacaaacgtttcttgaacggtggtcaatagttttgatt 34939332  T
Q  655 ggattttacacgtttctcttaagtttttcacacgtttttggacctcattaaatgccatataccttataccacctataaaaac 736  Q
    || |||||||| ||| |||||| |||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||    
T  34939331 ggtttttacacatttttcttaaatttttcacacgtttttggacctcattaagtgctatctaccttataccacctataaaaac 34939250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 543 - 739
Target Start/End: Complemental strand, 33985533 - 33985337
Alignment:
Q  543 gtgagttaagttacgcatcactaagcctatgcgtgagttaattgacgcaagttggccagtggtaaaaactgaagcacaaacgtttcttggacggtagtca 642  Q
    |||| |||||| ||||| ||| |||||| |||| ||||||| |  |||||||||||| || |||||||||||||||||||||||||||||||||| ||||    
T  33985533 gtgacttaagtcacgcaacacaaagcctctgcgcgagttaacttgcgcaagttggccggtagtaaaaactgaagcacaaacgtttcttggacggtggtca 33985434  T
Q  643 atggttttgattggattttacacgtttctcttaagtttttcacacgtttttggacctcattaaatgccatataccttataccacctataaaaaccct 739  Q
    |||||||||||||  |||||||||||| ||||||||||||||||||||||| ||| ||||||| ||  || ||||||||| ||||||||||||||||    
T  33985433 atggttttgattgatttttacacgtttttcttaagtttttcacacgtttttagacatcattaagtgttatctaccttatatcacctataaaaaccct 33985337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 567 - 739
Target Start/End: Original strand, 54703664 - 54703835
Alignment:
Q  567 gcctatgcgtgagttaattgacgcaagttggccagtggtaaaaactgaagcacaaacgtttcttggacggtagtcaatggttttgattggattttacacg 666  Q
    ||||||| | ||||||| |  |||||||||| | |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||     
T  54703664 gcctatgtgcgagttaacttgcgcaagttggtcggtggtaaaaactgaagaacaaacgtttcttggacggtagttaatggttttgattggattttacaca 54703763  T
Q  667 tttctcttaagtttttcacacgtttttggacctcattaaatgccatataccttataccacctataaaaaccct 739  Q
    ||| ||||||  ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  54703764 tttttcttaa-attttcacacgtttttggacctcattaagtgtcatataccttataccacctataaaaaccct 54703835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 478 - 739
Target Start/End: Original strand, 47020003 - 47020263
Alignment:
Q  478 ggaattctgctcttcaccctgcacattttgctcgcgccctgtacttttttcaattttgaccctgtgtgagttaagttacgcatcactaagcctatgcgtg 577  Q
    |||||| |||||||||||| |||||||| |||||||||||| |  |||| ||| | | ||| || ||||||||||| ||||| |||| ||||| |||| |    
T  47020003 ggaattttgctcttcacccagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgcaccactgagcctctgcgcg 47020102  T
Q  578 agttaattgacgcaagttggccagtggtaaaaactgaagcacaaacgtttcttggacggtagtcaatggttttgattggattttacacgtttctcttaag 677  Q
    |||||| |  |||||||||| | |||||||||||||||||| |||||||||| | ||||| | ||||| |||||||||| |||||||||||| | | |||    
T  47020103 agttaacttgcgcaagttggacggtggtaaaaactgaagcaaaaacgtttct-gaacggtggacaatgcttttgattggtttttacacgtttatttgaag 47020201  T
Q  678 tttttcacacgtttttggacctcattaaatgccatataccttataccacctataaaaaccct 739  Q
    ||||||||||||||||||||||| |||| ||  || ||||||||||| | ||||||||||||    
T  47020202 tttttcacacgtttttggacctcgttaagtgttatctaccttataccgcttataaaaaccct 47020263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 543 - 737
Target Start/End: Original strand, 42118977 - 42119172
Alignment:
Q  543 gtgagttaagttacgcatcactaagcctatgcgtgagttaattgacgcaagttggccagtggtaaaaactgaagcacaaacgtttcttggacggtagtca 642  Q
    |||| |||||| ||||| |||| ||||| | || ||||||| |  |||||||||||| ||||||||||||||||||||||||||| | ||||||| ||||    
T  42118977 gtgacttaagtcacgcaccactgagcctctacgcgagttaacttgcgcaagttggccggtggtaaaaactgaagcacaaacgtttttgggacggtggtca 42119076  T
Q  643 atggttttgattggattttacacg-tttctcttaagtttttcacacgtttttggacctcattaaatgccatataccttataccacctataaaaacc 737  Q
    ||| |||||||||| ||||||||| ||| | || |||||||||||||||||||||||||| ||| ||| || ||||||||||||||||||||||||    
T  42119077 atgcttttgattggtttttacacgttttttttttagtttttcacacgtttttggacctcactaagtgctatctaccttataccacctataaaaacc 42119172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 543 - 689
Target Start/End: Complemental strand, 43502369 - 43502223
Alignment:
Q  543 gtgagttaagttacgcatcactaagcctatgcgtgagttaattgacgcaagttggccagtggtaaaaactgaagcacaaacgtttcttggacggtagtca 642  Q
    |||| ||||||  |||| |||| |||||||||| ||||||| |  |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  43502369 gtgacttaagtcgcgcaccactgagcctatgcgcgagttaacttgcgcaagttggccggtggtaaaaactgaagcacaaacgtttcttggacggtagtca 43502270  T
Q  643 atggttttgattggattttacacgtttctcttaagtttttcacacgt 689  Q
    |||| ||||||||||||||||| |||| |||||||||||||||||||    
T  43502269 atggctttgattggattttacatgtttttcttaagtttttcacacgt 43502223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 561 - 739
Target Start/End: Complemental strand, 52032768 - 52032586
Alignment:
Q  561 cactaagcctatgcgtgagttaattgacgcaagttggccagtggtaaaaactgaagcacaaacgtttcttggacggtagtcaatggttttgattggattt 660  Q
    |||| |||||||||| ||||||| |  ||||| |||||| |||||||||||| |||||||||||||| | ||||||| || |||| |||||||||| |||    
T  52032768 cactgagcctatgcgcgagttaacttgcgcaaattggccggtggtaaaaactaaagcacaaacgtttttgggacggtggtaaatgcttttgattggtttt 52032669  T
Q  661 tacacg----tttctcttaagtttttcacacgtttttggacctcattaaatgccatataccttataccacctataaaaaccct 739  Q
    |||| |    ||| | || ||||||||||| |||||||||||||||||| |||||||||||||||||||||  ||||||||||    
T  52032668 tacaagtttttttttttttagtttttcacatgtttttggacctcattaagtgccatataccttataccaccggtaaaaaccct 52032586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 548 - 736
Target Start/End: Complemental strand, 45043088 - 45042900
Alignment:
Q  548 ttaagttacgcatcactaagcctatgcgtgagttaattgacgcaagttggccagtggtaaaaactgaagcacaaacgtttcttggacggtagtcaatggt 647  Q
    |||||| ||||| |||| ||||| |  ||||||||| |  || ||||||||| ||||||||||||||||||||||||||| | ||||||| || |||| |    
T  45043088 ttaagtcacgcaccactgagcctctatgtgagttaacttgcgtaagttggccggtggtaaaaactgaagcacaaacgtttttgggacggtggtgaatgct 45042989  T
Q  648 tttgattggattttacacgtttctcttaagtttttcacacgtttttggacctcattaaatgccatataccttataccacctataaaaac 736  Q
    ||||||||| |||||||  ||| | || |  ||||||||||||||||||||||||||| ||  || |||||||||||||||||||||||    
T  45042988 tttgattggtttttacattttttttttgaagttttcacacgtttttggacctcattaagtgttatctaccttataccacctataaaaac 45042900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 588 - 739
Target Start/End: Complemental strand, 37694551 - 37694398
Alignment:
Q  588 cgcaagttggccagtggtaaaaactgaagcacaaacgtttcttggacggtagtcaatggttttgattggattttacac-gtttctcttaagtttttcaca 686  Q
    |||||||||||| |||||||||||||||||||| |||||| | ||||| | ||||||| |||||||||| ||||| ||  ||| | || |||||||||||    
T  37694551 cgcaagttggccggtggtaaaaactgaagcacagacgtttttgggacgatggtcaatgcttttgattggtttttatactttttttttttagtttttcaca 37694452  T
Q  687 cgtttttggacctcattaaatgccat-ataccttataccacctataaaaaccct 739  Q
    ||||||||||||||||||| ||  ||  ||||||| ||||||||||||||||||    
T  37694451 cgtttttggacctcattaagtgatatgctaccttaaaccacctataaaaaccct 37694398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 479 - 559
Target Start/End: Complemental strand, 52032882 - 52032802
Alignment:
Q  479 gaattctgctcttcaccctgcacattttgctcgcgccctgtacttttttcaattttgaccctgtgtgagttaagttacgca 559  Q
    |||||||||||||||||||||||||||| |||||||| || ||||||||||| |||||||||| ||||||||||| |||||    
T  52032882 gaattctgctcttcaccctgcacattttactcgcgccttgcacttttttcaaatttgaccctgcgtgagttaagtcacgca 52032802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 479 - 559
Target Start/End: Original strand, 54703525 - 54703605
Alignment:
Q  479 gaattctgctcttcaccctgcacattttgctcgcgccctgtacttttttcaattttgaccctgtgtgagttaagttacgca 559  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||| | | |||||| ||||||||||| |||||    
T  54703525 gaattctgctcttcaccctgcacattttgctcgcgccctgcacttttttcaaatataaccctgcgtgagttaagtaacgca 54703605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 588 - 739
Target Start/End: Complemental strand, 779495 - 779339
Alignment:
Q  588 cgcaagttggccagtggtaaaaactgaagcacaaacgtttcttggacggtagtcaatggttttgattggattttacacg-----tttctcttaagttttt 682  Q
    |||||||||||| |||||||||| |||||||  ||||||| | ||||||| ||||||| |||||||||  |||||||||     ||| | || |  ||||    
T  779495 cgcaagttggccggtggtaaaaattgaagcattaacgtttttgggacggtggtcaatgcttttgattgatttttacacgttgtttttttttttaaatttt 779396  T
Q  683 cacacgtttttggacctcattaaatgccatataccttataccacctataaaaaccct 739  Q
    ||||| ||||||||| ||||||| ||| || |||||||||||| |||||||||||||    
T  779395 cacacatttttggacgtcattaagtgctatctaccttataccatctataaaaaccct 779339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 479 - 559
Target Start/End: Complemental strand, 36047091 - 36047011
Alignment:
Q  479 gaattctgctcttcaccctgcacattttgctcgcgccctgtacttttttcaattttgaccctgtgtgagttaagttacgca 559  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||||||| | | | |||||| ||||||||||| |||||    
T  36047091 gaattctgctcttcaccctgcacattttgcttgcgccctgcacttttttcgaatataaccctgcgtgagttaagtaacgca 36047011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 477 - 518
Target Start/End: Complemental strand, 31825930 - 31825889
Alignment:
Q  477 aggaattctgctcttcaccctgcacattttgctcgcgccctg 518  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  31825930 aggaattctgctcttcaccctgcacattttgctcgcgccctg 31825889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 479 - 518
Target Start/End: Complemental strand, 21713364 - 21713325
Alignment:
Q  479 gaattctgctcttcaccctgcacattttgctcgcgccctg 518  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  21713364 gaattctgctcttcaccctgcacattttgctcgcgccctg 21713325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 572 - 642
Target Start/End: Original strand, 31823039 - 31823109
Alignment:
Q  572 tgcgtgagttaattgacgcaagttggccagtggtaaaaactgaagcacaaacgtttcttggacggtagtca 642  Q
    |||||||||||| | ||||| ||||||| ||||| | |||||||| |||||||||| ||||||||| ||||    
T  31823039 tgcgtgagttaactcacgcacgttggccggtggtcagaactgaagaacaaacgttttttggacggtggtca 31823109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 479 - 518
Target Start/End: Original strand, 21710700 - 21710739
Alignment:
Q  479 gaattctgctcttcaccctgcacattttgctcgcgccctg 518  Q
    |||| |||||||||||||||||||||||||||| ||||||    
T  21710700 gaatactgctcttcaccctgcacattttgctcgtgccctg 21710739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 477 - 512
Target Start/End: Complemental strand, 38133068 - 38133033
Alignment:
Q  477 aggaattctgctcttcaccctgcacattttgctcgc 512  Q
    |||||||||||||||||||||| |||||||||||||    
T  38133068 aggaattctgctcttcaccctgtacattttgctcgc 38133033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 479 - 518
Target Start/End: Complemental strand, 45865064 - 45865025
Alignment:
Q  479 gaattctgctcttcaccctgcacattttgctcgcgccctg 518  Q
    |||||||||| | |||||||||||||||||||||||||||    
T  45865064 gaattctgctatccaccctgcacattttgctcgcgccctg 45865025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 479 - 518
Target Start/End: Complemental strand, 49065750 - 49065711
Alignment:
Q  479 gaattctgctcttcaccctgcacattttgctcgcgccctg 518  Q
    ||||||| | ||||||||||||||||||||||||||||||    
T  49065750 gaattcttcccttcaccctgcacattttgctcgcgccctg 49065711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 479 - 518
Target Start/End: Complemental strand, 54185720 - 54185681
Alignment:
Q  479 gaattctgctcttcaccctgcacattttgctcgcgccctg 518  Q
    |||||||||||| ||||||||| |||||||||||||||||    
T  54185720 gaattctgctctccaccctgcatattttgctcgcgccctg 54185681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 479 - 553
Target Start/End: Complemental strand, 34939558 - 34939484
Alignment:
Q  479 gaattctgctcttcaccctgcacattttgctcgcgccctgtacttttttcaattttgaccctgtgtgagttaagt 553  Q
    ||||| |||||||||| | |||||||| |||||||||||| |   ||||||| | |||||||| |||||||||||    
T  34939558 gaattttgctcttcactcagcacatttcgctcgcgccctgcatgattttcaaatatgaccctgcgtgagttaagt 34939484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 479 - 520
Target Start/End: Complemental strand, 18487208 - 18487167
Alignment:
Q  479 gaattctgctcttcaccctgcacattttgctcgcgccctgta 520  Q
    ||||||||||||| |||||||||||||||||| | |||||||    
T  18487208 gaattctgctctttaccctgcacattttgctcacaccctgta 18487167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 485 - 518
Target Start/End: Original strand, 38131332 - 38131365
Alignment:
Q  485 tgctcttcaccctgcacattttgctcgcgccctg 518  Q
    |||||||||||| |||||||||||||||||||||    
T  38131332 tgctcttcacccagcacattttgctcgcgccctg 38131365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 125; Significance: 5e-64; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 555 - 739
Target Start/End: Original strand, 4322711 - 4322895
Alignment:
Q  555 acgcatcactaagcctatgcgtgagttaattgacgcaagttggccagtggtaaaaactgaagcacaaacgtttcttggacggtagtcaatggttttgatt 654  Q
    ||||| |||| |||||||||| ||||||| |  ||||||||| || |||||||||||||||||||||| ||||||||| || ||| ||||| ||||||||    
T  4322711 acgcaccactgagcctatgcgcgagttaacttgcgcaagttgaccggtggtaaaaactgaagcacaaatgtttcttgggcgatagccaatgattttgatt 4322810  T
Q  655 ggattttacacgtttctcttaagtttttcacacgtttttggacctcattaaatgccatataccttataccacctataaaaaccct 739  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  4322811 ggattttacacgtttttcttaagtttttcacacgtttttggacctcattaagtgccatataccttataccacctataaaaaccct 4322895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 555 - 739
Target Start/End: Original strand, 35161621 - 35161804
Alignment:
Q  555 acgcatcactaagcctatgcgtgagttaattgacgcaagttggccagtggtaaaaactgaagcacaaacgtttcttggacggtagtcaatggttttgatt 654  Q
    ||||| |||| |||||||||| ||||||| |  ||||||||| || ||||||||| |||||||||||||||||||| |||||||||||||| ||||||||    
T  35161621 acgcaccactgagcctatgcgcgagttaacttgcgcaagttgaccggtggtaaaa-ctgaagcacaaacgtttcttagacggtagtcaatgattttgatt 35161719  T
Q  655 ggattttacacgtttctcttaagtttttcacacgtttttggacctcattaaatgccatataccttataccacctataaaaaccct 739  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  35161720 ggattttacacgtttttcttaagtttttcacacgtttttggacctcattaagtgtcatataccttataccacctataaaaaccct 35161804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 588 - 735
Target Start/End: Complemental strand, 15739746 - 15739599
Alignment:
Q  588 cgcaagttggccagtggtaaaaactgaagcacaaacgtttcttggacggtagtcaatggttttgattggattttacacgtttctcttaagtttttcacac 687  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||||    
T  15739746 cgcaagttggccggtggtaaaaactgaagcacaaacgtttcttggacggtaggcaatggttttaattggattttacacgtttttcttaagtttttcacac 15739647  T
Q  688 gtttttggacctcattaaatgccatataccttataccacctataaaaa 735  Q
    |||||||||||||||||| || ||||||||||||||||||||||||||    
T  15739646 gtttttggacctcattaagtgtcatataccttataccacctataaaaa 15739599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 543 - 739
Target Start/End: Original strand, 9039668 - 9039864
Alignment:
Q  543 gtgagttaagttacgcatcactaagcctatgcgtgagttaattgacgcaagttggccagtggtaaaaactgaagcacaaacgtttcttggacggtagtca 642  Q
    |||| |||||| || || |||| | ||| |||| ||||||| |  |||||||||||| ||||||||||||  ||||||||||||||||||| ||||||||    
T  9039668 gtgacttaagtcacacaccactgaacctctgcgcgagttaacttgcgcaagttggccggtggtaaaaactacagcacaaacgtttcttggatggtagtca 9039767  T
Q  643 atggttttgattggattttacacgtttctcttaagtttttcacacgtttttggacctcattaaatgccatataccttataccacctataaaaaccct 739  Q
    |||||||||||||| ||||||| |||| |||||||||||||||| |||||||||||||||||| ||| || ||||||||||||||||||||||||||    
T  9039768 atggttttgattggtttttacatgtttttcttaagtttttcacatgtttttggacctcattaagtgctatctaccttataccacctataaaaaccct 9039864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 540 - 739
Target Start/End: Original strand, 1217791 - 1217990
Alignment:
Q  540 tgtgtgagttaagttacgcatcactaagcctatgcgtgagttaattgacgcaagttggccagtggtaaaaactgaagcacaaacgtttcttggacggtag 639  Q
    ||||||| |||||| ||||| |||  ||||| |||| ||||| | |  |||||||||||| ||||||||||||||| ||||||||||||| ||||||| |    
T  1217791 tgtgtgacttaagtcacgcaccaccgagcctctgcgcgagttgacttgcgcaagttggccggtggtaaaaactgaaacacaaacgtttctgggacggtgg 1217890  T
Q  640 tcaatggttttgattggattttacacgtttctcttaagtttttcacacgtttttggacctcattaaatgccatataccttataccacctataaaaaccct 739  Q
    |||||| |||||||||| |||||||| ||| | ||||||||||||||||||||||||||| | ||| |   || ||||||||||||||||||||||||||    
T  1217891 tcaatgcttttgattggtttttacacattttttttaagtttttcacacgtttttggaccttaataagtattatctaccttataccacctataaaaaccct 1217990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 588 - 739
Target Start/End: Complemental strand, 5913155 - 5913004
Alignment:
Q  588 cgcaagttggccagtggtaaaaactgaagcacaaacgtttcttggacggtagtcaatggttttgattggattttacac-gtttctcttaagtttttcaca 686  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||| |||||||| | ||||| ||  ||| | || |||||||||||    
T  5913155 cgcaagttggccggtggtaaaaactgaagcacaaacgtttctgggacggtagccaatgcttttgatt-gtttttaaactttttttttttagtttttcaca 5913057  T
Q  687 cgtttttggacctcattaaatgccatataccttataccacctataaaaaccct 739  Q
    |||| |||||||||||||| ||| || ||||||||||||||||||||||||||    
T  5913056 cgttgttggacctcattaagtgctatctaccttataccacctataaaaaccct 5913004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 588 - 738
Target Start/End: Original strand, 42182708 - 42182861
Alignment:
Q  588 cgcaagttggccagtggtaaaaactgaagcacaaacgtttcttggacggtagtcaatggttttgattggattttacacgtttctctt----aagtttttc 683  Q
    |||||||||||| ||||||||||||||||||||||||||| | |||  || ||||||| |||||||||| ||||||||  || | ||    |||||||||    
T  42182708 cgcaagttggccggtggtaaaaactgaagcacaaacgtttttgggatagtggtcaatgcttttgattgg-ttttacactcttttttttttaaagtttttc 42182806  T
Q  684 acacgtttttggacctcattaaatgccatataccttataccacctataaaaaccc 738  Q
    |||||||||||||||||||||| ||| || |||||||||||||||||||||||||    
T  42182807 acacgtttttggacctcattaagtgctatctaccttataccacctataaaaaccc 42182861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 543 - 737
Target Start/End: Complemental strand, 4759292 - 4759094
Alignment:
Q  543 gtgagttaagttacgcatcactaagcctatgcgtgagttaattgacgcaagttggccagtggtaaaaactgaagcacaaacgtttcttggacggtagtca 642  Q
    |||| |||||| | ||| |||| ||||| |||| ||||||| |  |||||||||| | |||||||||||||||||||||||||||| ||||||||  |||    
T  4759292 gtgacttaagtcatgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactgaagcacaaacgtttc-tggacggtgttca 4759194  T
Q  643 atggttttgattgg-attttacacgtttctctt---aagtttttcacacgtttttggacctcattaaatgccatataccttatacc-acctataaaaacc 737  Q
    ||| ||||||||||  |||||||||||| | ||   ||    ||||||||||||||||||||||||| ||| || ||||||||||| |||||||||||||    
T  4759193 atgcttttgattggttttttacacgttttttttataaaaaaattcacacgtttttggacctcattaagtgctatctaccttataccaacctataaaaacc 4759094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 479 - 559
Target Start/End: Complemental strand, 15743388 - 15743308
Alignment:
Q  479 gaattctgctcttcaccctgcacattttgctcgcgccctgtacttttttcaattttgaccctgtgtgagttaagttacgca 559  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| ||| | | | |||||||||||||||| |||||    
T  15743388 gaattctgctcttcaccctgcacattttgctcgcgccctgcactttttccaaatataatcctgtgtgagttaagtcacgca 15743308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 587 - 665
Target Start/End: Complemental strand, 2766903 - 2766825
Alignment:
Q  587 acgcaagttggccagtggtaaaaactgaagcacaaacgtttcttggacggtagtcaatggttttgattggattttacac 665  Q
    ||||||||||||||||||| |||||||||| |||||||||| ||||||||| ||||||| |||| ||||| ||||||||    
T  2766903 acgcaagttggccagtggtcaaaactgaagaacaaacgttttttggacggtggtcaatgctttttattggtttttacac 2766825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 572 - 737
Target Start/End: Complemental strand, 23810911 - 23810741
Alignment:
Q  572 tgcgtgagttaattgacgcaagttggccagtggtaaaaactgaagcacaaacgtttcttggacggtagtcaatggttttgattggattttacacgtttct 671  Q
    |||||||||||| |  |||||||||| | ||||||||| ||||||||||||||||||  |||| || ||||||  |||||||||  ||||||||| || |    
T  23810911 tgcgtgagttaacttgcgcaagttggacggtggtaaaa-ctgaagcacaaacgtttcagggaccgtggtcaattcttttgattgatttttacacgctttt 23810813  T
Q  672 cttaa------gtttttcacacgtttttggacctcattaaatgccatataccttataccacctataaaaacc 737  Q
     | ||      |||||| ||||||||||||||||||||||  || |  ||| ||||||||||||||||||||    
T  23810812 ttaaaaaaaaagttttttacacgtttttggacctcattaagggctacctacgttataccacctataaaaacc 23810741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 479 - 553
Target Start/End: Original strand, 35161495 - 35161569
Alignment:
Q  479 gaattctgctcttcaccctgcacattttgctcgcgccctgtacttttttcaattttgaccctgtgtgagttaagt 553  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||||| || | | ||| || |||||||||||    
T  35161495 gaattctactcttcaccctgcacattttgctcgcgccctgcactttttttaaatataaccatgcgtgagttaagt 35161569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 482 - 551
Target Start/End: Original strand, 4322587 - 4322656
Alignment:
Q  482 ttctgctcttcaccctgcacattttgctcgcgccctgtacttttttcaattttgaccctgtgtgagttaa 551  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||| || | | | ||||||||||||||    
T  4322587 ttctgctcttcactctgcacattttgctcgcgccctgcactttttttaaatataatcctgtgtgagttaa 4322656  T

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Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 479 - 518
Target Start/End: Complemental strand, 43693764 - 43693725
Alignment:
Q  479 gaattctgctcttcaccctgcacattttgctcgcgccctg 518  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  43693764 gaattttgctcttcaccctgcacattttgctcgcgccctg 43693725  T

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Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 480 - 518
Target Start/End: Original strand, 37226988 - 37227026
Alignment:
Q  480 aattctgctcttcaccctgcacattttgctcgcgccctg 518  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  37226988 aattctgctcttcacccagcacattttgctcgcgccctg 37227026  T

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Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 479 - 518
Target Start/End: Original strand, 4412597 - 4412636
Alignment:
Q  479 gaattctgctcttcaccctgcacattttgctcgcgccctg 518  Q
    ||||||||||||| |||| |||||||||||||||||||||    
T  4412597 gaattctgctctttacccagcacattttgctcgcgccctg 4412636  T

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Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 479 - 514
Target Start/End: Complemental strand, 9512565 - 9512530
Alignment:
Q  479 gaattctgctcttcaccctgcacattttgctcgcgc 514  Q
    ||||||||||||||||||||||| ||||||||||||    
T  9512565 gaattctgctcttcaccctgcactttttgctcgcgc 9512530  T

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Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 479 - 553
Target Start/End: Original strand, 1217679 - 1217753
Alignment:
Q  479 gaattctgctcttcaccctgcacattttgctcgcgccctgtacttttttcaattttgaccctgtgtgagttaagt 553  Q
    ||||| |||||||||| | |||||||| |||||||||||| |  |||| ||| | | ||||||||||||||||||    
T  1217679 gaattttgctcttcactcagcacatttcgctcgcgccctgcatgttttccaaatataaccctgtgtgagttaagt 1217753  T

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Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 477 - 518
Target Start/End: Complemental strand, 23542944 - 23542903
Alignment:
Q  477 aggaattctgctcttcaccctgcacattttgctcgcgccctg 518  Q
    ||||||| |||||||||||| |||||||| ||||||||||||    
T  23542944 aggaattttgctcttcacccagcacatttcgctcgcgccctg 23542903  T

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Target: chr6 (Bit Score: 115; Significance: 5e-58; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 566 - 739
Target Start/End: Original strand, 11599045 - 11599212
Alignment:
Q  566 agcctatgcgtgagttaattgacgcaagttggccagtggtaaaaactgaagcacaaacgtttcttggacggtagtcaatggttttgattggattttacac 665  Q
    |||||||||| ||||||| |  |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||    
T  11599045 agcctatgcgcgagttaacttgcgcaagttggccggtggtaaaaactgaagcacaaacgtttcttggacggtagtcaatggttttg------ttttacac 11599138  T
Q  666 gtttctcttaagtttttcacacgtttttggacctcattaaatgccatataccttataccacctataaaaaccct 739  Q
     ||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  11599139 atttttcttaagtttttcacacgtttttggacctcattaagtgccatatactttataccacctataaaaaccct 11599212  T

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Target: chr6; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 543 - 739
Target Start/End: Complemental strand, 30634199 - 30634003
Alignment:
Q  543 gtgagttaagttacgcatcactaagcctatgcgtgagttaattgacgcaagttggccagtggtaaaaactgaagcacaaacgtttcttggacggtagtca 642  Q
    |||| |||||| ||||| |||| ||||| | |||||||||| |  |||||||||||| ||||||||||||||||||||||||||| | ||||||| | ||    
T  30634199 gtgacttaagtcacgcaccactgagcctctacgtgagttaacttgcgcaagttggccggtggtaaaaactgaagcacaaacgtttttgggacggtggcca 30634100  T
Q  643 atggttttgattggattttacacgtttctcttaagtttttcacacgtttttggacctcattaaatgccatataccttataccacctataaaaaccct 739  Q
    ||| |||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||| ||  ||||||||||||||| |||||||||||||    
T  30634099 atgcttttgattgatttttacacgtttttcttaagtttttcacacgtttttggacctcattaagtgttatataccttataccatctataaaaaccct 30634003  T

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Target: chr6; HSP #3
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 543 - 705
Target Start/End: Complemental strand, 3515302 - 3515140
Alignment:
Q  543 gtgagttaagttacgcatcactaagcctatgcgtgagttaattgacgcaagttggccagtggtaaaaactgaagcacaaacgtttcttggacggtagtca 642  Q
    |||| |||||| ||||| |||| ||||| | || ||||||| |  |||||||||||| ||||||||||||| ||||||||||||| | ||||||| ||||    
T  3515302 gtgacttaagtcacgcaccactgagcctctacgcgagttaacttgcgcaagttggccggtggtaaaaactgtagcacaaacgtttttcggacggtggtca 3515203  T
Q  643 atggttttgattggattttacacgtttctcttaagtttttcacacgtttttggacctcattaa 705  Q
    || ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  3515202 atagttttgattggtttttacacgtttttcttaagtttttcacacgtttttggacctcattaa 3515140  T

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Target: chr6; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 479 - 551
Target Start/End: Original strand, 11598907 - 11598979
Alignment:
Q  479 gaattctgctcttcaccctgcacattttgctcgcgccctgtacttttttcaattttgaccctgtgtgagttaa 551  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||| ||| | | |||||| |||||||||    
T  11598907 gaattttgctcttcaccctgcacattttgctcgcgccctgcactttttccaaatataaccctgcgtgagttaa 11598979  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 479 - 518
Target Start/End: Original strand, 5741178 - 5741217
Alignment:
Q  479 gaattctgctcttcaccctgcacattttgctcgcgccctg 518  Q
    ||||||||||||||||||||||| ||||||||||| ||||    
T  5741178 gaattctgctcttcaccctgcactttttgctcgcgtcctg 5741217  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 479 - 518
Target Start/End: Complemental strand, 5741602 - 5741563
Alignment:
Q  479 gaattctgctcttcaccctgcacattttgctcgcgccctg 518  Q
    ||||||||||||||||||||||| ||| ||||||||||||    
T  5741602 gaattctgctcttcaccctgcacttttcgctcgcgccctg 5741563  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 472 - 559
Target Start/End: Complemental strand, 30634321 - 30634234
Alignment:
Q  472 aagaaaggaattctgctcttcaccctgcacattttgctcgcgccctgtacttttttcaattttgaccctgtgtgagttaagttacgca 559  Q
    |||||| ||||| ||||||||||||   |||||| |||||||||||| || |||| ||| | | |||||| ||||||||||| |||||    
T  30634321 aagaaaagaattttgctcttcacccaatacatttcgctcgcgccctgcacattttccaaatataaccctgcgtgagttaagtcacgca 30634234  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 479 - 516
Target Start/End: Complemental strand, 9521523 - 9521486
Alignment:
Q  479 gaattctgctcttcaccctgcacattttgctcgcgccc 516  Q
    |||||||||||||| |||||||| ||||||||||||||    
T  9521523 gaattctgctcttccccctgcactttttgctcgcgccc 9521486  T

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Target: scaffold0019 (Bit Score: 71; Significance: 9e-32; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 8 - 126
Target Start/End: Original strand, 2539 - 2657
Alignment:
Q  8 aatagaagggttattcggtggctggctgaattgcttaggttcattttatggtctggagctttgctgaagatggcggtgaaaaagggtagcagttctagtg 107  Q
    ||||||||||||||||  | ||||||||||||||||||||||||||   |||||||||| |||||||| |||||||||||||||||||  |||| ||| |    
T  2539 aatagaagggttattctctagctggctgaattgcttaggttcatttgtgggtctggagcgttgctgaatatggcggtgaaaaagggtaatagttttaggg 2638  T
Q  108 ttgtggaattcctaagttc 126  Q
    |||||||||||||||||||    
T  2639 ttgtggaattcctaagttc 2657  T

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Target: scaffold0007 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 479 - 510
Target Start/End: Original strand, 256391 - 256422
Alignment:
Q  479 gaattctgctcttcaccctgcacattttgctc 510  Q
    ||||||||||||||||||||||||||||||||    
T  256391 gaattctgctcttcaccctgcacattttgctc 256422  T

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Target: scaffold0217 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 566 - 627
Target Start/End: Original strand, 25624 - 25685
Alignment:
Q  566 agcctatgcgtgagttaattgacgcaagttggccagtggtaaaaactgaagcacaaacgttt 627  Q
    ||||| |||| ||||||| | ||||||||||||| ||||| | |||||||| ||||||||||    
T  25624 agcctttgcgcgagttaactcacgcaagttggccggtggtcagaactgaagaacaaacgttt 25685  T

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