View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4436_high_7 (Length: 254)
Name: NF4436_high_7
Description: NF4436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4436_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 2668458 - 2668237
Alignment:
| Q |
18 |
gttctacatgggttcaagctaatatttctagcctaaaaatatgaggtccattacacctataaataaatatcacgttatccgacatcgactgataagccat |
117 |
Q |
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| T |
2668458 |
gttctacatgggtttaagctaatatttctagcctaaaaatatgaggtccattacaactataaataaatatcacgttatccgacatcgactgataggccat |
2668359 |
T |
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| Q |
118 |
tgaattttagacgatgaaaccctcaatcgatgaaagataagacgatgctggaacaactgagtgagagacactgttctttctgaaatccactaactaaata |
217 |
Q |
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||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||| |
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| T |
2668358 |
tgaattttagacgatgaaaccttcaatcgatgaaaggtaaggcgatgctggaacaactgagtgagagacattgttctttctagaattcactaactaaata |
2668259 |
T |
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| Q |
218 |
aacaacgagcttcttaattact |
239 |
Q |
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|||||||||||||||||||||| |
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| T |
2668258 |
aacaacgagcttcttaattact |
2668237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 2678793 - 2678724
Alignment:
| Q |
25 |
atgggttcaagctaatatttctagcctaaaaatatgaggtccattacacctataaataaatatcacgtta |
94 |
Q |
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||||||| ||| ||||||||||| |||||||||||||||| |||||||||| | ||||| ||||||| |
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| T |
2678793 |
atgggtttaagataatatttctaccctaaaaatatgaggttgtttacacctattattaaatgccacgtta |
2678724 |
T |
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