View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4436_high_9 (Length: 243)
Name: NF4436_high_9
Description: NF4436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4436_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 51754496 - 51754720
Alignment:
| Q |
1 |
agactaaatgaataaaagcaattcaaaagttgaagattgcatgtttagttgtctacaaaaaagaagnnnnnnnaatgataaacacattagctgtagaaaa |
100 |
Q |
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| T |
51754496 |
agactaaatgaataaaagcaattcaaaagttgaagattgcatgtttagttgtctacagaaaagaagtttttt-aatgataaacacaatagctgtagaaaa |
51754594 |
T |
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| Q |
101 |
tggaggaaactattaataataggttggtttgattggacaatgccacatgtttatgacaaaacatactttggttgacactttattttatttaatacactga |
200 |
Q |
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| T |
51754595 |
tggaggaaacaattaataataggttggtttgattggacaatgccatatgtttatgacaaaacatactttggttgacactttattttatttaatacactga |
51754694 |
T |
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| Q |
201 |
taaaagggagtcattaaagcattgtg |
226 |
Q |
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| T |
51754695 |
taaaagggagtaattaaagcattgtg |
51754720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 179
Target Start/End: Original strand, 51766540 - 51766572
Alignment:
| Q |
147 |
atgtttatgacaaaacatactttggttgacact |
179 |
Q |
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| T |
51766540 |
atgtttatgacaaaacatactttggttgacact |
51766572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 102 - 179
Target Start/End: Complemental strand, 5522337 - 5522260
Alignment:
| Q |
102 |
ggaggaaactattaataataggttggtttgattggacaatgccacatgtttatgacaaaacatactttggttgacact |
179 |
Q |
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| T |
5522337 |
ggaggaaacaattaataatgtgttcgtttgattggacaatgccatatgtttatgaccaaacatactttggttgacact |
5522260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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