View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4436_low_1 (Length: 517)
Name: NF4436_low_1
Description: NF4436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4436_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 444; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 1 - 505
Target Start/End: Complemental strand, 14541584 - 14541080
Alignment:
| Q |
1 |
gtgtcagaaaagatttgcttccatcttcttcgagtattggtcaaggtactgttattgtccccgaccccgactgctacattgaactaattgcaagttttga |
100 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14541584 |
gtgtcagaaaatatttgcttccatcttcttcgagtattggtcaaggtactgttattgtccccgaccccgactgctacattgaactaattgcaagttttga |
14541485 |
T |
|
| Q |
101 |
tctgcttttaaactcactcacgtgtgcaactaacatggcattgcctcttttaaagtgatgttcggattgcataaagatgaagcagttatgctgttcaaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
14541484 |
tctgcttttaaactcactcacgtgtgcaactaacatggcattgcctcttttaaagtgatgttcggattgcataaagatgaagcagttatcctgttcaaaa |
14541385 |
T |
|
| Q |
201 |
ctgattccaagttaataaaatctaatctaatgaaaatgctaacaaatgtcnnnnnnnatatttaagaaaagtaattcaatgcattttaaacaagatagga |
300 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||| || ||||| ||||||||||||||||||||||||||| |||| |||| |
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| T |
14541384 |
ctgattccaagttaataaaatctaatttaatgaaaatgctaacaaatatctttttttatattcaagaaaagtaattcaatgcattttaaataagaaagga |
14541285 |
T |
|
| Q |
301 |
atgcaaacttgtgaacgatcacattagtttgcctcatattaaactcaatacgagagttttcaaaattactttgaaacacttgtctacaaacatctataat |
400 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
14541284 |
atgcaaacttgtgaacgaccacattagtttgcctcatattaaactcaatacgagagtttttaaaattactttgaaacacttgtctacaaacatctataat |
14541185 |
T |
|
| Q |
401 |
acatctaaatttactattatcttctacatatgttctaaaagcatccacaatcttctaagagtctagagaaaaatatacattatcaaattgaagggatgat |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
14541184 |
acatctaaatttactattatcttctacatatgttctaaaagcatccacaatcttctaagagtctagagaaaaatatacattatcaaattgaaggtatgat |
14541085 |
T |
|
| Q |
501 |
gtcca |
505 |
Q |
| |
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||||| |
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| T |
14541084 |
gtcca |
14541080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 102 - 179
Target Start/End: Complemental strand, 14539825 - 14539748
Alignment:
| Q |
102 |
ctgcttttaaactcactcacgtgtgcaactaacatggcattgcctcttttaaagtgatgttcggattgcataaagatg |
179 |
Q |
| |
|
|||||||| |||||| |||||||| |||| ||| |||| ||||||||||||||||||||||||||||||| ||||||| |
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| T |
14539825 |
ctgcttttgaactcagtcacgtgtacaacaaacgtggctttgcctcttttaaagtgatgttcggattgcagaaagatg |
14539748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 4e-36; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 337 - 506
Target Start/End: Complemental strand, 712314 - 712145
Alignment:
| Q |
337 |
tattaaactcaatacgagagttttcaaaattactttgaaacacttgtctacaaacatctataatacatctaaatttactattatcttctacatatgttct |
436 |
Q |
| |
|
|||||||||||| | ||||||||| ||| || ||||||||| | |||||| || ||||||||||| ||||| || | ||||||||||| ||||||| |
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| T |
712314 |
tattaaactcaacatgagagttttaaaatctattttgaaacaactatctacatgcaagtataatacatccaaattcacaactatcttctacacatgttct |
712215 |
T |
|
| Q |
437 |
aaaagcatccacaatcttctaagagtctagagaaaaatatacattatcaaattgaagggatgatgtccat |
506 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||| ||||| ||||||||||||||||||| ||||||||||| |
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| T |
712214 |
aaaagcatccacaaccttcttagagtctagagcaaaatctacattatcaaattgaaggtatgatgtccat |
712145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 317 - 505
Target Start/End: Complemental strand, 717544 - 717356
Alignment:
| Q |
317 |
gatcacattagtttgcctcatattaaactcaatacgagagttttcaaaattactttgaaacacttgtctacaaacatctataatacatctaaatttacta |
416 |
Q |
| |
|
|||| |||||| ||| ||| |||||||||||| | ||||||||| ||| ||||||| || | ||||||||| || |||||||||||| ||||| |||| |
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| T |
717544 |
gatcccattagcttgtctcctattaaactcaacatgagagttttgaaatctactttggaataattgtctacattcaactataatacatccaaattcacta |
717445 |
T |
|
| Q |
417 |
ttatcttctacatatgttctaaaagcatccacaatcttctaagagtctagagaaaaatatacattatcaaattgaagggatgatgtcca |
505 |
Q |
| |
|
||||| ||||| || ||||||||||||| |||| ||||| ||||||||||| |||| ||||||||||||||||||| ||||||||| |
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| T |
717444 |
ctatctcctacacatcttctaaaagcatcaacaaccttcttagagtctagagctaaatctacattatcaaattgaaggtgtgatgtcca |
717356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 381 - 505
Target Start/End: Original strand, 36724254 - 36724378
Alignment:
| Q |
381 |
tgtctacaaacatctataatacatctaaatttactattatcttctacatatgttctaaaagcatccacaatcttctaagagtctagagaaaaatatacat |
480 |
Q |
| |
|
||||||||| |||||||||| |||||||||| |||| |||||| || |||||||| |||||||||| |||| ||||||||||||||||| | || |
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| T |
36724254 |
tgtctacaagcatctataatgcatctaaattcactactatcttatatgcttgttctaagagcatccacatccttcacagagtctagagaaaaatctgtat |
36724353 |
T |
|
| Q |
481 |
tatcaaattgaagggatgatgtcca |
505 |
Q |
| |
|
|||||||||||||| ||||||||| |
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|
| T |
36724354 |
tatcaaattgaaggtctgatgtcca |
36724378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 322 - 427
Target Start/End: Original strand, 2087394 - 2087499
Alignment:
| Q |
322 |
cattagtttgcctcatattaaactcaatacgagagttttcaaaattactttgaaacacttgtctacaaacatctataatacatctaaatttactattatc |
421 |
Q |
| |
|
|||||||||||||| ||||||| | || | ||||||||| ||| |||||||||||| |||| ||| |||||||||||||| ||||| | | || |||| |
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| T |
2087394 |
cattagtttgcctcgtattaaatttaacatgagagttttgaaatctactttgaaacaagtgtcaacagacatctataatacaactaaactcaatactatc |
2087493 |
T |
|
| Q |
422 |
ttctac |
427 |
Q |
| |
|
|||||| |
|
|
| T |
2087494 |
ttctac |
2087499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 316 - 360
Target Start/End: Original strand, 14856980 - 14857024
Alignment:
| Q |
316 |
cgatcacattagtttgcctcatattaaactcaatacgagagtttt |
360 |
Q |
| |
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|||||||||| |||||||||||||||||||| | | ||||||||| |
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|
| T |
14856980 |
cgatcacatttgtttgcctcatattaaactcgacatgagagtttt |
14857024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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