View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4436_low_12 (Length: 230)
Name: NF4436_low_12
Description: NF4436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4436_low_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 14 - 228
Target Start/End: Original strand, 54267946 - 54268160
Alignment:
| Q |
14 |
gcataggcatagacatagtacaaaattatttatggtactgtagttagtacgtagtagtagttaccgcaggtcagtatacggaagtacagtacatatacat |
113 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54267946 |
gcataggcataggcatagtacaaaattatttatggtactgtagttagtacgtagtagtagttaccgcaggtcagtatacggaagtacagtacatatacat |
54268045 |
T |
|
| Q |
114 |
gaatgaagctactgctactagtgctaggtagtttagactttagacaagttgagcatgtggccaagaatctattcccataggaccaactactcctcctcct |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54268046 |
gaatgaagctactgctactagtgctaggtagtttagactttagacaagttgagcatgtggccaagaatctattcccataggaccaactactcctcctcct |
54268145 |
T |
|
| Q |
214 |
cctctactgttaata |
228 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
54268146 |
cctctactgttaata |
54268160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 107
Target Start/End: Complemental strand, 21132231 - 21132193
Alignment:
| Q |
69 |
agtagttaccgcaggtcagtatacggaagtacagtacat |
107 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
21132231 |
agtagttaccgcaggtcagtataccgaagtacaatacat |
21132193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University