View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4436_low_13 (Length: 227)
Name: NF4436_low_13
Description: NF4436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4436_low_13 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 9127865 - 9128091
Alignment:
| Q |
1 |
aacaggttaattgttaattgcaagagacaaagatacatgggatgatgtcctaattgttcctttataaaggggcacacccaagtgtcttaaccgtcaatac |
100 |
Q |
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| T |
9127865 |
aacaggttaattgttaattgcaagagacaaagatacatgggatgatgtcctaattgttcctttataaaggggcacacccaagtgtcttaaccgtcaatac |
9127964 |
T |
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| Q |
101 |
cggccaaataggacacgtggcacaacctcatggaaacacgtatagccaccagatctctgatttttgaagtgatatttataagtgtgctttttgtcaaatc |
200 |
Q |
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| T |
9127965 |
cggccaaataggacacgtggcacaacctcatggaaacacgtatagccaccaaatctctggtttttgaagtgatatttataagtgtgctttttgtcaaatc |
9128064 |
T |
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| Q |
201 |
ttcttatcatgcattcaacacttatgt |
227 |
Q |
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| T |
9128065 |
ttcttatcatgcattcaacacttatgt |
9128091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 9057586 - 9057812
Alignment:
| Q |
1 |
aacaggttaattgttaattgcaagagacaaagatacatgggatgatgtcctaattgttcctttataaaggggcacacccaagtgtcttaaccgtcaatac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9057586 |
aacaggttaattgttaattgcaagagacaaagatacatgggatgatgtcctaattgttcctttataaaggggcacacccaagtgtcttaaccgtcaatac |
9057685 |
T |
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| Q |
101 |
cggccaaataggacacgtggcacaacctcatggaaacacgtatagccaccagatctctgatttttgaagtgatatttataagtgtgctttttgtcaaatc |
200 |
Q |
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| T |
9057686 |
cggccaaataggacacatggcacaacctcatggaaacacgtatagccaccaaatctctggtttttgaagtgatatttataagtgtgctttttgtcaaatc |
9057785 |
T |
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| Q |
201 |
ttcttatcatgcattcaacacttatgt |
227 |
Q |
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| T |
9057786 |
ttcttatcatgcattcaacacttatgt |
9057812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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