View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4436_low_4 (Length: 421)
Name: NF4436_low_4
Description: NF4436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4436_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 363; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 11 - 405
Target Start/End: Original strand, 7316909 - 7317303
Alignment:
| Q |
11 |
atgaacctgtaaatggctagcaacatgttgttttgtaacatcgggaacatccatgattttctgaatcttttttggcgttgcccctgaaaaataagagaaa |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7316909 |
atgaacctgtaaatggctagcaacatgttgttttgtaacatcgggaacatccatgattttctgaatcttttttggcgttgcccctgaaaaataagagaaa |
7317008 |
T |
|
| Q |
111 |
aacatcacataagttcagctgttgaagaatgcaacaaagcatagtaataaaagcaattagtaaagaatcatactatcaaggcctagttgattgacagcat |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
7317009 |
aacatcacataagttcagctgttgaagaatgcaacaaagcatagtaataaaagcaattaggaaagaatcatactatcaaggcctagttgattgacagcat |
7317108 |
T |
|
| Q |
211 |
atagaaaccgctgatgcagttctggcgaccaagacaaacgagccttctttgcaagtgtttcttttgaggcatcagcatcttctctacccggttttctaca |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
7317109 |
atagaaaccgctgatgcagttctggcgaccaagacaaacgggccttctttgcaagtgtttcttttgaggcatcagcatcttctctaccccgttttctaca |
7317208 |
T |
|
| Q |
311 |
ttcttgaaccaccaagcttccaacaatttcatattctttattttcagtcaaaccgtttcttacaacatgttgccacatgatcttgacctcttctt |
405 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||| |
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| T |
7317209 |
ttcttgaaccaccaagctttcaacaatttcatattctttattttcagtcttaccttttcttacaacatgttgccacattatcttgacctcttctt |
7317303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 13 - 396
Target Start/End: Complemental strand, 7219143 - 7218761
Alignment:
| Q |
13 |
gaacctgtaaatggctagcaacatgttgttttgtaacatcgggaacatccatgattttctgaatcttttttggcgttgcccctgaaaaataagagaaaaa |
112 |
Q |
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|||||||||||||||| ||||| |||| |||||| | || ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
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| T |
7219143 |
gaacctgtaaatggctggcaacctgttcttttgtcatattgggaacatccatgattttcagaatcttttttggcattgcccctgaaaaataagagaaaaa |
7219044 |
T |
|
| Q |
113 |
cat-cacataagttcagctgttgaagaatgcaacaaagcatagtaataaaagcaattagtaaagaatcatactatcaaggcctagttgattgacagcata |
211 |
Q |
| |
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||| |||||||||| || ||| |||||| |||||||| | | ||| ||| ||||| |||||| |||||||||||||||||||||||||||||| | |
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| T |
7219043 |
catgcacataagttgagttgta-aagaatacaacaaagaa-attaacgaaattaattaagaaagaagcatactatcaaggcctagttgattgacagccca |
7218946 |
T |
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| Q |
212 |
tagaaaccgctgatgcagttctggcgaccaagacaaacgagccttctttgcaagtgtttcttttgaggcatcagcatcttctctacccggttttctacat |
311 |
Q |
| |
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|||||| || ||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||| | |||||||||||||| |||||||| | |
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| T |
7218945 |
tagaaatcgttgatgcaattctggcgaccaagacaaacgggccttctttgcctgtgtttcttttgaggcattatcatcttctctaccccgttttctaatt |
7218846 |
T |
|
| Q |
312 |
tcttgaaccaccaagcttccaacaatttcatattctttattttcagtcaaaccgtttcttacaacatgttgccacatgatcttga |
396 |
Q |
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|||||||||||| ||||||||||||||||||||||||| ||| |||||||||| ||||||| |||||||||||||||| |||||| |
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| T |
7218845 |
tcttgaaccaccgagcttccaacaatttcatattctttgtttgcagtcaaaccttttcttataacatgttgccacatggtcttga |
7218761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 165 - 405
Target Start/End: Original strand, 7323840 - 7324080
Alignment:
| Q |
165 |
aattagtaaagaatcatactatcaaggcctagttgattgacagcatatagaaaccgctgatgcagttctggcgaccaagacaaacgagccttctttgcaa |
264 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
7323840 |
aattaggaaagaatcatactatcaaggcctagttgattgactgcacatagaaactgctgatgcagttctggcgaccaagacaaactggtcttctttgcaa |
7323939 |
T |
|
| Q |
265 |
gtgtttcttttgaggcatcagcatcttctctacccggttttctacattcttgaaccaccaagcttccaacaatttcatattctttattttcagtcaaacc |
364 |
Q |
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|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7323940 |
gtgtttcttttgaggcattagcatcttctctaccccgttttctacattcttgaaccaccaagcttccaacaatttcatattctttattttcagtcgaacc |
7324039 |
T |
|
| Q |
365 |
gtttcttacaacatgttgccacatgatcttgacctcttctt |
405 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| |
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| T |
7324040 |
gtttcttacaacatgttgccacattatcttgacctcttctt |
7324080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 18 - 396
Target Start/End: Complemental strand, 8162888 - 8162504
Alignment:
| Q |
18 |
tgtaaatggctagcaacatgttgttttgtaacatcgggaacatccatgattttctgaatcttttttggcgttgcccctgaaaaataagagaaaaacat-c |
116 |
Q |
| |
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|||||||||| ||||||||||| |||||| | || |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| | |
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| T |
8162888 |
tgtaaatggccagcaacatgttcttttgtcatattgggaacatccatgattttctgaatcttttttggcgttgcctctgaaaaagaagagaaaaacatgc |
8162789 |
T |
|
| Q |
117 |
acataagttcagctgttgaagaatgcaacaaagcatagtaataaaagcaatta------gtaaagaatcatactatcaaggcctagttgattgacagcat |
210 |
Q |
| |
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||| ||||| || ||||||||| | |||||||||||||| |||| | || | ||||||||||||||||||||||||||||||||||||| |
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| T |
8162788 |
acagaagttgagtcattgaagaatacgacaaagcatagtaa-aaaatttactatgctgtggaaagaatcatactatcaaggcctagttgattgacagccc |
8162690 |
T |
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| Q |
211 |
atagaaaccgctgatgcagttctggcgaccaagacaaacgagccttctttgcaagtgtttcttttgaggcatcagcatcttctctacccggttttctaca |
310 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||| || |||||||| ||||||||||||||||||| ||||||||||||||| |||||||| |
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| T |
8162689 |
atagaaaccgctgatgcagttctggcgaccaagagaaacgggctgtctttgcatgtgtttcttttgaggcatcggcatcttctctaccccgttttctatt |
8162590 |
T |
|
| Q |
311 |
ttcttgaaccaccaagcttccaacaatttcatattctttattttcagtcaaaccgtttcttacaacatgttgccacatgatcttga |
396 |
Q |
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||||||||| | |||||||||||||| | |||||||||||||||| || ||| |||||| ||||||||||||||||| |||||| |
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| T |
8162589 |
agcttgaaccatcgagcttccaacaattgcgtattctttattttcaggcataccttttcttgcaacatgttgccacatggtcttga |
8162504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 165 - 405
Target Start/End: Complemental strand, 7244522 - 7244282
Alignment:
| Q |
165 |
aattagtaaagaatcatactatcaaggcctagttgattgacagcatatagaaaccgctgatgcagttctggcgaccaagacaaacgagccttctttgcaa |
264 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||| ||||||||||| |
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| T |
7244522 |
aattaggaaagaatcatactatcaaggcctagttgattgacagcccatagaaatcgttgatgcagttctggcgaccaagacaaacgggccttctttgcgt |
7244423 |
T |
|
| Q |
265 |
gtgtttcttttgaggcatcagcatcttctctacccggttttctacattcttgaaccaccaagcttccaacaatttcatattctttattttcagtcaaacc |
364 |
Q |
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||||||||||||| | | | |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||| |
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| T |
7244422 |
ttgtttcttttgagactttatcatcttctctaccccgttttctacattcttgaaccaccaagctttcaacaatttcacattctttattttcagtcacacc |
7244323 |
T |
|
| Q |
365 |
gtttcttacaacatgttgccacatgatcttgacctcttctt |
405 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
7244322 |
ttttcttacaacatgttgccacattatcttgacctcttctt |
7244282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 313 - 396
Target Start/End: Original strand, 22766001 - 22766084
Alignment:
| Q |
313 |
cttgaaccaccaagcttccaacaatttcatattctttattttcagtcaaaccgtttcttacaacatgttgccacatgatcttga |
396 |
Q |
| |
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||||||| |||||||||||||| ||| || || ||||||||| ||||||| |||||| ||||||| |||||||||||||||| |
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| T |
22766001 |
cttgaacatccaagcttccaacacttttatgttttttattttccctcaaaccttttcttgcaacatgctgccacatgatcttga |
22766084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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