View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4436_low_5 (Length: 372)
Name: NF4436_low_5
Description: NF4436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4436_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 18 - 361
Target Start/End: Original strand, 42629846 - 42630204
Alignment:
| Q |
18 |
cactaatatgtgttgattttctactttctttgacttacatttctaggttctgattcattgagagagcaatgagagtgggagagattagtttttagattaa |
117 |
Q |
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| T |
42629846 |
cactaatatgtgttgattttctactttctttgacttacatttctaggttctgattcattgagagagcaatgagagtgggagagattagtttttagattaa |
42629945 |
T |
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| Q |
118 |
tagactagnnnnnnnctcctttatttggttttgaattcgggactttcaaactcccataacccttagctcaaatttatatatgaaagtgaattttcccccn |
217 |
Q |
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| T |
42629946 |
tagactagtttttttctcctttatttggttttgaattcgggactttcaaactcccataacccttagctcaaatttatatatgaaagtgaattttcccccc |
42630045 |
T |
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| Q |
218 |
nnnnnnnntaattaaacatgattataggaacttctaacaatgataa---------------caaatgattctttgattttttaatccaaaggggatatac |
302 |
Q |
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||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |
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| T |
42630046 |
aaaaaaaataattaaacatgattatgggaacttctaacaatgataacaaaaagaagacaaccaaatgattctttgattttttaatccaaagaggatatac |
42630145 |
T |
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| Q |
303 |
tagtgcagtcaatggacagacccattgttatctgaaggagcaacttgtttcacaggttc |
361 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
42630146 |
tagtacagtcaatggacagacccattgttatctgaaggagcaacttgtttgacaggttc |
42630204 |
T |
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