View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4436_low_6 (Length: 293)
Name: NF4436_low_6
Description: NF4436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4436_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 48493025 - 48492737
Alignment:
| Q |
1 |
tattctttgcagccttgaacatagtattgggaatgcaagctgcaggagcaacgaatgcttggaagacaagctatggattccttgctggtattataattgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48493025 |
tattctttgcagccttgaacatagtattgggaatgcaagctgcaggagcaacgaatgcttggaagacaagctatggattccttgctggtattataattgt |
48492926 |
T |
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| Q |
101 |
tgtagttatcgttctcgaaatattggcatatttaaaaaggtcagagaaacgttctcttcctccaaatttccaaatggaccctcttggagaagaaatcttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48492925 |
tgtagttatcgttctcgaaatattggcatatttaaaaaggtcagagaaacgttctcttcctccaaatttccaaatggaccctcttggagaagaaatcttt |
48492826 |
T |
|
| Q |
201 |
ccaagaaataatcaaacaaaaggtacattctttcctttgctttatacaactttctttgtttaagttgttttgtgtaacattgtatctaa |
289 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48492825 |
ccaagaaataatcaaacaaaaggtacattctttcctttgctttatacaactttctttgtttaagttgttttgtgtaacattgtatctaa |
48492737 |
T |
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