View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4437-Insertion-2 (Length: 549)
Name: NF4437-Insertion-2
Description: NF4437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4437-Insertion-2 |
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Alignment Details
Target: chr6 (Bit Score: 168; Significance: 9e-90; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 8 - 243
Target Start/End: Complemental strand, 23098141 - 23097906
Alignment:
| Q |
8 |
gattttttatattaggtacatgtaagatctttttattaatctata-ctattaataaagtggacataannnnnnnnnn-ccattttccttttcaaaattat |
105 |
Q |
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| T |
23098141 |
gattttttatattaggtacatgtaagatctttttattaatctataactattaataaagtggacataatttttttctttccattttccttttcaaaattat |
23098042 |
T |
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| Q |
106 |
taaatgatgtccatttcttcttactctagattggacaatcggctatttgtacggattgtgaaatcattggtgaatcttatatatttactctgttttacca |
205 |
Q |
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|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23098041 |
taaatgatgtccatttcttcctactctagattggacaatcgactatttgtacggattgtgaaatcattggtgaatcttatatatttactctgttttacca |
23097942 |
T |
|
| Q |
206 |
ttttaaaatttgaatgtccaacttaaagtttcagttat |
243 |
Q |
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|||| ||||||||||||||||||| ||||||||||||| |
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| T |
23097941 |
tttt-aaatttgaatgtccaactt-aagtttcagttat |
23097906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 84 - 211
Target Start/End: Complemental strand, 508881 - 508756
Alignment:
| Q |
84 |
ccattttccttttcaaaattattaaatgatgtccatttcttcttactctagattggacaatcggctatttgtacggattgtgaaatcattggtgaatctt |
183 |
Q |
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||||||||||||| ||||||||| ||| ||||||||||| |||| |||| |||||||| ||| ||||||||| |||| ||||||||| ||||| |||| |
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| T |
508881 |
ccattttcctttttaaaattattgaatattgtccatttctacttattctacattggacactcgactatttgtatggatggtgaaatcagaggtgactctt |
508782 |
T |
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| Q |
184 |
atatatttactctgttttaccattttaa |
211 |
Q |
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| T |
508781 |
-ttta-ttactctattttaccattttaa |
508756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 84 - 212
Target Start/End: Original strand, 29782546 - 29782672
Alignment:
| Q |
84 |
ccattttccttttcaaaattattaaatgatgtccatttcttcttactctagattggacaatcggctatttgtacggattgtgaaatcattggtgaatctt |
183 |
Q |
| |
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||||||||||||| ||||| ||| ||| |||| |||||| |||| |||| |||||||| ||| ||||||||| |||| ||||||||| ||||| |||| |
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| T |
29782546 |
ccattttcctttttaaaatgattgaatattgtctatttctacttattctacattggacactcgactatttgtatggatggtgaaatcagaggtgactctt |
29782645 |
T |
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| Q |
184 |
atatatttactctgttttaccattttaaa |
212 |
Q |
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| T |
29782646 |
-ttta-ttagtctattttaccattttaaa |
29782672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 84 - 171
Target Start/End: Complemental strand, 35577972 - 35577885
Alignment:
| Q |
84 |
ccattttccttttcaaaattattaaatgatgtccatttcttcttactctagattggacaatcggctatttgtacggattgtgaaatca |
171 |
Q |
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| T |
35577972 |
ccattttcctttttaaaattattgaatattgtccatttctacttattctacattggacactcgactatttgtatggatggtgaaatca |
35577885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 84 - 211
Target Start/End: Complemental strand, 44922399 - 44922274
Alignment:
| Q |
84 |
ccattttccttttcaaaattattaaatgatgtccatttcttcttactctagattggacaatcggctatttgtacggattgtgaaatcattggtgaatctt |
183 |
Q |
| |
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||||||||||||| ||||||||| ||| ||||||||||| |||| |||| |||||||| ||| |||| |||| |||| ||||||||| ||||| |||| |
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| T |
44922399 |
ccattttcctttttaaaattattgaatattgtccatttctacttattctacattggacactcgactatctgtatggatggtgaaatcagaggtgactctt |
44922300 |
T |
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| Q |
184 |
atatatttactctgttttaccattttaa |
211 |
Q |
| |
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| || ||||||| |||||||||||||| |
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| T |
44922299 |
-ttta-ttactctattttaccattttaa |
44922274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 84 - 210
Target Start/End: Original strand, 1413657 - 1413781
Alignment:
| Q |
84 |
ccattttccttttcaaaattattaaatgatgtccatttcttcttactctagattggacaatcggctatttgtacggattgtgaaatcattggtgaatctt |
183 |
Q |
| |
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||||||||||||| ||||||||| ||| ||||||||||| |||| |||| ||||| | ||| ||||||||| |||| ||||||||| ||||| |||| |
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| T |
1413657 |
ccattttcctttttaaaattattgaatattgtccatttctacttattctacattgggtactcgactatttgtatggatggtgaaatcagaggtgactctt |
1413756 |
T |
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| Q |
184 |
atatatttactctgttttaccatttta |
210 |
Q |
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| || ||||||||||||||||||||| |
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| T |
1413757 |
-ttta-ttactctgttttaccatttta |
1413781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 84 - 171
Target Start/End: Original strand, 46122337 - 46122425
Alignment:
| Q |
84 |
ccattttccttttc-aaaattattaaatgatgtccatttcttcttactctagattggacaatcggctatttgtacggattgtgaaatca |
171 |
Q |
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||||||||||||| |||| |||| ||| ||||||||||| |||| |||| |||||||| ||| ||||||||| |||| ||||||||| |
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| T |
46122337 |
ccattttccttttttaaaactattgaatattgtccatttctacttattctacattggacactcgactatttgtatggatggtgaaatca |
46122425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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