View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4437-Insertion-3 (Length: 473)
Name: NF4437-Insertion-3
Description: NF4437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4437-Insertion-3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 8 - 473
Target Start/End: Complemental strand, 12455303 - 12454839
Alignment:
| Q |
8 |
tatttctgttgggttgtcatgttttattattatgaataacatcaaggatattacaagaattatgcttaatcctaccactgttannnnnnnnnnnnnnnna |
107 |
Q |
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| T |
12455303 |
tatttctgttggcttgtcatgttttattgttatgaataacatcaaggatattacaagaattatgcttaatcctaccactgttatttattgttatttttta |
12455204 |
T |
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| Q |
108 |
aaagttctagatagtttgatgacaaccattt-ctatggacaacttggtgttttcgaggaaaagctctatccttgattgtgtttagatt---ttgactatg |
203 |
Q |
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| T |
12455203 |
aaagttctagatagtttgatgacaaccattttctatggacagattggtgttttcgaggaaaagctctatccttgattgtgttcagattacattgactatg |
12455104 |
T |
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| Q |
204 |
aatatacccgagagctctcagttcaatcgtattgtccctagaaaaacaatatcaaatatgcttcatactctcgaggaaggtttatttgtggttcgttcta |
303 |
Q |
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| T |
12455103 |
aatatacccgagagctctcagttcaatcgtatttttcctagaaaaacaatatcaaatatgcttcatactctcgaggaagatttatttgtggttcgttcta |
12455004 |
T |
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| Q |
304 |
tggttgttaggtgttttcaagttgataaatattggtaagctttgtgtgactatggaagatttatgaatctgaaaaatgatttacacatttaatttgtggc |
403 |
Q |
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| T |
12455003 |
tggttgttgggtgttttcaagttgataaatattggtaaactttgtgtgactatggaagattaatgaatctgaaaaatgatttacac-----atttgtggc |
12454909 |
T |
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| Q |
404 |
cattgtatttgcaccacctttaacctttcccacaagtaaatccctttatttatttatgaatatgttgtta |
473 |
Q |
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| T |
12454908 |
cattgtatttgcaccacctttaacctttcccacaagtaaatccctttaatcatttatgaatatgttgtta |
12454839 |
T |
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