View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4437-Insertion-4 (Length: 385)

Name: NF4437-Insertion-4
Description: NF4437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4437-Insertion-4
NF4437-Insertion-4
[»] chr2 (2 HSPs)
chr2 (7-360)||(16921044-16921397)
chr2 (280-324)||(27724244-27724288)
[»] chr6 (4 HSPs)
chr6 (220-354)||(286253-286387)
chr6 (126-301)||(2741665-2741837)
chr6 (222-267)||(29124307-29124352)
chr6 (222-267)||(32744734-32744779)
[»] chr4 (3 HSPs)
chr4 (221-348)||(48741856-48741983)
chr4 (215-297)||(42449933-42450015)
chr4 (221-302)||(44186226-44186307)
[»] chr5 (4 HSPs)
chr5 (215-282)||(42262530-42262597)
chr5 (221-302)||(15807590-15807671)
chr5 (230-277)||(16486625-16486672)
chr5 (286-355)||(9764563-9764632)


Alignment Details
Target: chr2 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 7 - 360
Target Start/End: Complemental strand, 16921397 - 16921044
Alignment:
Q  7 aaaagtaagactacaaaataaaatttataaagatagatctataatatcatcagatagcttctagatttgtaatatacttaatagcaattataatttatgg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  16921397 aaaagtaagactacaaaataaaatttataaagatagatctataatatcatcagatagcttctagatttgtaatgtacttaatagcaattataatttatgg 16921298  T
Q  107 acataagaaggcaataaaaatacaaggtaaaatacttctaaccaaagtcataaacctccaattgggagaagagtatccttataaattattatctggcaac 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16921297 acataagaaggcaataaaaatacaaggtaaaatacttctaaccaaagtcataaacctccaattgggagaagagtatccttataaattattatctggcaac 16921198  T
Q  207 cataatacttgtttcctttaacaccaagctcttcaatcatttgggtattcaaatcaaaccagactatttcattatcatcttttctgaagaatatatgacc 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16921197 cataatacttgtttcctttaacaccaagctcttcaatcatttgggtattcaaatcaaaccagactatttcattatcatcttttctgaagaatatatgacc 16921098  T
Q  307 attcttccctgctccgattggacgttcaatgccaggtaagggctcaacaacaaa 360  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  16921097 attcttccctgctccgattggacgttcaatgccaagtaatggctcaacaacaaa 16921044  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 324
Target Start/End: Original strand, 27724244 - 27724288
Alignment:
Q  280 atcatcttttctgaagaatatatgaccattcttccctgctccgat 324  Q
    |||||||||||| || ||||||| ||| |||||||||||||||||    
T  27724244 atcatcttttctcaaaaatatatcacccttcttccctgctccgat 27724288  T

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Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 220 - 354
Target Start/End: Original strand, 286253 - 286387
Alignment:
Q  220 tcctttaacaccaagctcttcaatcatttgggtattcaaatcaaaccagactatttcattatcatcttttctgaagaatatatgaccattcttccctgct 319  Q
    ||||||| || ||||||||| |||||||||  || |||||||| || |||||| ||||| ||||||||||||||||||||||| ||| ||||||||| ||    
T  286253 tcctttagcatcaagctctttaatcatttgtatactcaaatcagacgagactagttcatcatcatcttttctgaagaatatatcacctttcttccctact 286352  T
Q  320 ccgattggacgttcaatgccaggtaagggctcaac 354  Q
    || || ||||| |||||   ||||||| |||||||    
T  286353 ccaataggacgctcaatataaggtaagagctcaac 286387  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 126 - 301
Target Start/End: Original strand, 2741665 - 2741837
Alignment:
Q  126 atacaaggtaaaatacttctaaccaaagtcataaacctccaattgggagaagagtatccttataaattattatctggcaaccataatacttgtttccttt 225  Q
    ||||||| |||||| |||  ||||||| |||||||| | ||||||||||||||   || ||||||||||| || ||||||   || ||||    ||||||    
T  2741665 atacaagataaaatcctttaaaccaaaatcataaactttcaattgggagaagaccgtctttataaattatgatttggcaa---tattactcacatccttt 2741761  T
Q  226 aacaccaagctcttcaatcatttgggtattcaaatcaaaccagactatttcattatcatcttttctgaagaatata 301  Q
    || ||||| ||||||||||||| | ||| |||||||||| ||||||| ||||| ||||| |||| |||||||||||    
T  2741762 aataccaatctcttcaatcattcgagtactcaaatcaaatcagactagttcatgatcatgttttttgaagaatata 2741837  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 29124352 - 29124307
Alignment:
Q  222 ctttaacaccaagctcttcaatcatttgggtattcaaatcaaacca 267  Q
    |||||| ||||||||| ||||||||||||||| |||||||||||||    
T  29124352 ctttaaaaccaagctcctcaatcatttgggtactcaaatcaaacca 29124307  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 32744734 - 32744779
Alignment:
Q  222 ctttaacaccaagctcttcaatcatttgggtattcaaatcaaacca 267  Q
    |||||| ||||||||| ||||||||||||||| |||||||||||||    
T  32744734 ctttaaaaccaagctcctcaatcatttgggtactcaaatcaaacca 32744779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 221 - 348
Target Start/End: Original strand, 48741856 - 48741983
Alignment:
Q  221 cctttaacaccaagctcttcaatcatttgggtattcaaatcaaaccagactatttcattatcatcttttctgaagaatatatgaccatt-cttccctgct 319  Q
    ||||||||||||||||| ||||| |||||||||||||||| ||||||||||| ||||| ||  | | |||| ||||||| || |||||| ||||||| ||    
T  48741856 cctttaacaccaagctcctcaattatttgggtattcaaattaaaccagactagttcatcattttttcttctaaagaataaatcaccattacttccct-ct 48741954  T
Q  320 ccgattggacgttcaatgccaggtaaggg 348  Q
    || || ||| ||||||||| |||||||||    
T  48741955 ccaataggatgttcaatgctaggtaaggg 48741983  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 297
Target Start/End: Complemental strand, 42450015 - 42449933
Alignment:
Q  215 ttgtttcctttaacaccaagctcttcaatcatttgggtattcaaatcaaaccagactatttcattatcatcttttctgaagaa 297  Q
    |||| |||||||||||||||||  ||||||||||| ||  | ||||||| |||||||| ||| |||||| |||| ||||||||    
T  42450015 ttgtctcctttaacaccaagcttctcaatcatttgagtccttaaatcaacccagactagttctttatcacctttgctgaagaa 42449933  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 302
Target Start/End: Complemental strand, 44186307 - 44186226
Alignment:
Q  221 cctttaacaccaagctcttcaatcatttgggtattcaaatcaaaccagactatttcattatcatcttttctgaagaatatat 302  Q
    ||||||||||| || ||||||||  |||| ||||| |||||||| ||  |||||||||| |||| |||| | ||||||||||    
T  44186307 cctttaacacccagatcttcaattgtttgagtatttaaatcaaaacaagctatttcattgtcattttttataaagaatatat 44186226  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 215 - 282
Target Start/End: Complemental strand, 42262597 - 42262530
Alignment:
Q  215 ttgtttcctttaacaccaagctcttcaatcatttgggtattcaaatcaaaccagactatttcattatc 282  Q
    |||| ||||| ||||||||||||||||||||| || || |||||||||| ||| ||||||| ||||||    
T  42262597 ttgtctccttcaacaccaagctcttcaatcatctgagttttcaaatcaacccaaactattttattatc 42262530  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 221 - 302
Target Start/End: Original strand, 15807590 - 15807671
Alignment:
Q  221 cctttaacaccaagctcttcaatcatttgggtattcaaatcaaaccagactatttcattatcatcttttctgaagaatatat 302  Q
    |||||||||||||||||||| ||  | |||||  | ||||||||||| ||||  |||||||| | |||||||||||||||||    
T  15807590 cctttaacaccaagctcttcgattctctgggtgcttaaatcaaaccaaactaactcattatccttttttctgaagaatatat 15807671  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 230 - 277
Target Start/End: Original strand, 16486625 - 16486672
Alignment:
Q  230 ccaagctcttcaatcatttgggtattcaaatcaaaccagactatttca 277  Q
    ||||| |||||||||||||||||||| ||||||||||| |||| ||||    
T  16486625 ccaagatcttcaatcatttgggtatttaaatcaaaccaaactagttca 16486672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 355
Target Start/End: Complemental strand, 9764632 - 9764563
Alignment:
Q  286 ttttctgaagaatatatgaccattcttccctgctccgattggacgttcaatgccaggtaagggctcaaca 355  Q
    |||| ||||||||||||  ||||||||||| |||||||| ||| | ||||||| ||  ||||||||||||    
T  9764632 ttttatgaagaatatatttccattcttcccagctccgataggatgctcaatgcaagacaagggctcaaca 9764563  T

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