View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4437_high_2 (Length: 575)

Name: NF4437_high_2
Description: NF4437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4437_high_2
NF4437_high_2
[»] chr7 (24 HSPs)
chr7 (400-554)||(4169207-4169361)
chr7 (183-328)||(4167300-4167445)
chr7 (320-415)||(4168971-4169068)
chr7 (9-95)||(4163265-4163351)
chr7 (1-122)||(1706372-1706491)
chr7 (22-122)||(4905083-4905181)
chr7 (14-122)||(34519270-34519376)
chr7 (99-154)||(4167236-4167291)
chr7 (1-122)||(12287246-12287365)
chr7 (13-122)||(27164300-27164407)
chr7 (13-122)||(41966088-41966195)
chr7 (183-288)||(35015880-35015985)
chr7 (4-85)||(35015704-35015785)
chr7 (13-120)||(6182639-6182744)
chr7 (246-288)||(35016101-35016143)
chr7 (32-120)||(33037387-33037473)
chr7 (13-122)||(965400-965510)
chr7 (13-122)||(1778798-1778905)
chr7 (246-296)||(29235707-29235757)
chr7 (183-233)||(34519436-34519486)
chr7 (246-295)||(27743807-27743856)
chr7 (240-296)||(1910960-1911016)
chr7 (219-295)||(26576154-26576230)
chr7 (1-89)||(32689513-32689601)
[»] chr4 (24 HSPs)
chr4 (1-169)||(44707534-44707699)
chr4 (1-154)||(25197239-25197390)
chr4 (13-169)||(15024506-15024660)
chr4 (183-290)||(36755113-36755220)
chr4 (1-122)||(55692890-55693010)
chr4 (20-157)||(28992492-28992626)
chr4 (13-90)||(37997099-37997176)
chr4 (1-95)||(3533846-3533940)
chr4 (13-122)||(44515901-44516008)
chr4 (2-122)||(16529998-16530115)
chr4 (15-122)||(46433045-46433150)
chr4 (22-89)||(56192413-56192480)
chr4 (13-95)||(13205513-13205595)
chr4 (13-122)||(36284497-36284604)
chr4 (15-95)||(29844955-29845035)
chr4 (1-122)||(12832299-12832418)
chr4 (218-296)||(37996900-37996978)
chr4 (1-86)||(45548996-45549081)
chr4 (183-295)||(16529826-16529938)
chr4 (40-122)||(3232629-3232709)
chr4 (183-282)||(38476254-38476353)
chr4 (183-290)||(55693073-55693180)
chr4 (207-265)||(44707735-44707793)
chr4 (13-121)||(54183925-54184030)
[»] chr3 (15 HSPs)
chr3 (40-297)||(26952390-26952643)
chr3 (41-153)||(47342454-47342564)
chr3 (13-170)||(51370424-51370580)
chr3 (13-123)||(48962357-48962465)
chr3 (183-296)||(27371681-27371795)
chr3 (22-122)||(11137769-11137867)
chr3 (183-288)||(37333177-37333282)
chr3 (11-122)||(26919183-26919292)
chr3 (15-122)||(29078728-29078833)
chr3 (32-95)||(19332041-19332104)
chr3 (22-122)||(20935990-20936088)
chr3 (13-81)||(19554750-19554818)
chr3 (13-88)||(20826382-20826457)
chr3 (204-295)||(18090360-18090451)
chr3 (32-88)||(44543212-44543268)
[»] chr1 (24 HSPs)
chr1 (1-170)||(48941372-48941539)
chr1 (13-288)||(12140725-12140995)
chr1 (2-122)||(20381052-20381170)
chr1 (22-122)||(29701118-29701216)
chr1 (13-90)||(50377758-50377835)
chr1 (22-155)||(9693877-9694007)
chr1 (11-155)||(16255286-16255427)
chr1 (26-122)||(50378146-50378240)
chr1 (183-295)||(8259459-8259571)
chr1 (32-122)||(32714120-32714208)
chr1 (9-122)||(48379625-48379736)
chr1 (22-122)||(25388921-25389019)
chr1 (240-289)||(48941593-48941642)
chr1 (183-289)||(50377924-50378032)
chr1 (183-274)||(16255455-16255545)
chr1 (21-95)||(14625145-14625219)
chr1 (246-295)||(26451977-26452026)
chr1 (13-73)||(42693316-42693376)
chr1 (40-95)||(33016565-33016620)
chr1 (1-122)||(15342687-15342806)
chr1 (1-95)||(26450862-26450955)
chr1 (246-286)||(20381275-20381315)
chr1 (246-290)||(48379475-48379519)
chr1 (246-290)||(51776546-51776590)
[»] chr5 (6 HSPs)
chr5 (1-122)||(23419021-23419140)
chr5 (22-122)||(35377779-35377877)
chr5 (13-122)||(16561909-16562017)
chr5 (34-122)||(27903717-27903803)
chr5 (240-290)||(9622424-9622474)
chr5 (13-122)||(10667309-10667415)
[»] chr6 (11 HSPs)
chr6 (1-295)||(32183771-32184062)
chr6 (22-95)||(13185641-13185714)
chr6 (15-95)||(15489565-15489645)
chr6 (183-287)||(21208156-21208260)
chr6 (1-121)||(22747125-22747243)
chr6 (40-122)||(521332-521412)
chr6 (3-122)||(15134848-15134965)
chr6 (183-274)||(15489393-15489484)
chr6 (32-88)||(20969604-20969660)
chr6 (204-282)||(22746982-22747059)
chr6 (189-289)||(3611188-3611288)
[»] chr2 (9 HSPs)
chr2 (1-122)||(9032505-9032624)
chr2 (12-155)||(43652615-43652756)
chr2 (13-122)||(5732727-5732834)
chr2 (183-290)||(9032693-9032800)
chr2 (32-122)||(38935260-38935348)
chr2 (13-80)||(19494919-19494986)
chr2 (4-155)||(7315172-7315321)
chr2 (22-87)||(9548608-9548672)
chr2 (63-155)||(25322944-25323033)
[»] scaffold0043 (2 HSPs)
scaffold0043 (183-296)||(71677-71791)
scaffold0043 (1-157)||(71512-71666)
[»] chr8 (13 HSPs)
chr8 (1-122)||(6148242-6148361)
chr8 (4-122)||(1597946-1598062)
chr8 (1-122)||(20765767-20765886)
chr8 (1-122)||(41407364-41407483)
chr8 (40-125)||(42845325-42845408)
chr8 (13-122)||(37127480-37127592)
chr8 (40-122)||(43429487-43429567)
chr8 (1-122)||(40216521-40216640)
chr8 (199-296)||(6148438-6148534)
chr8 (1-89)||(7186385-7186473)
chr8 (204-295)||(3346832-3346923)
chr8 (183-290)||(41407197-41407304)
chr8 (246-295)||(25141035-25141084)
[»] scaffold0069 (2 HSPs)
scaffold0069 (2-122)||(60841-60959)
scaffold0069 (246-286)||(61064-61104)
[»] scaffold1940 (1 HSPs)
scaffold1940 (22-120)||(704-800)
[»] scaffold0355 (2 HSPs)
scaffold0355 (1-155)||(2589-2740)
scaffold0355 (246-286)||(2812-2852)
[»] scaffold0127 (1 HSPs)
scaffold0127 (25-88)||(22910-22973)
[»] scaffold0006 (1 HSPs)
scaffold0006 (1-155)||(178190-178341)
[»] scaffold0001 (1 HSPs)
scaffold0001 (183-290)||(428286-428392)


Alignment Details
Target: chr7 (Bit Score: 143; Significance: 8e-75; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 400 - 554
Target Start/End: Original strand, 4169207 - 4169361
Alignment:
Q  400 aacattgcagtaatgaatataaaatcgtaactcattcaataatcaaggaaccaaaagaggaataaaacacaacaaatttattttccaataactgactcta 499  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  4169207 aacattgcagtaatgaatataaaatggtaactcattcaataatcaaggaaccaaaagaggaataaaacacaacaaatttattttccaataaccgactcta 4169306  T
Q  500 cccattattgtcctacaaaataggaaaactagaatgagtactaagcaaatgtaat 554  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  4169307 cccattattgtcctacaaaataggaaaactaggatgagtactaagcaaatgtaat 4169361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 183 - 328
Target Start/End: Original strand, 4167300 - 4167445
Alignment:
Q  183 tgcttccataaccactcttcaccataggcacccaaatattatactccataacaaagatgtctttttaatatggtgctaaatagatgaaacacacaccatt 282  Q
    ||||||||||  |||||||| |||||  ||| |||||||||||||||||||  | | ||||| |||||||||||||||||||| |||||||||||| |||    
T  4167300 tgcttccatagtcactcttctccataatcactcaaatattatactccataatgagggtgtctatttaatatggtgctaaataggtgaaacacacactatt 4167399  T
Q  283 gtggatggcctaaggttgtactttaaccaatcatacattaaaacaa 328  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  4167400 gtggatggcctaaggttgtactttaacaaatcatacattaaaacaa 4167445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 320 - 415
Target Start/End: Original strand, 4168971 - 4169068
Alignment:
Q  320 ttaaaacaattatatcaagattgtaagcttggttaatttcaaatgtcaatcctgatta--ataattcatgtatatgtggcataacattgcagtaatga 415  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||  ||||||||||||||||||||||||||||||| ||||||    
T  4168971 ttaaaacaattatatcaaggttgtaagcttggttaatttcaaatgtcaatcttaattaatataattcatgtatatgtggcataacattgcactaatga 4169068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 9 - 95
Target Start/End: Original strand, 4163265 - 4163351
Alignment:
Q  9 acttattttacaataatacttattaagcactaattttctccaacccagcatcacaaaagaaattactaaataggtcccacaagtaat 95  Q
    |||||||||||||||||||||| ||||||| ||||||||| ||||||||| || ||||||||||| |||||||||||||||| ||||    
T  4163265 acttattttacaataatacttactaagcaccaattttctctaacccagcaccataaaagaaattattaaataggtcccacaaataat 4163351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 1706372 - 1706491
Alignment:
Q  1 tccacataacttattttacaataatacttattaagcactaattttctccaacccagcatcacaaaagaaattactaaataggtcccacaagtaatcacat 100  Q
    ||||||| ||| |||||||  | ||||||| ||||||  |||||||||||| |||||| |  ||||||||||| |||||||||||||||| ||||    |    
T  1706372 tccacatcactcattttaccgtcatacttaataagcatcaattttctccaatccagcaccttaaaagaaattattaaataggtcccacaaataat--ttt 1706469  T
Q  101 atatcattacatttcaacaaaa 122  Q
    ||||||||||||||||||||||    
T  1706470 atatcattacatttcaacaaaa 1706491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 22 - 122
Target Start/End: Original strand, 4905083 - 4905181
Alignment:
Q  22 taatacttattaagcactaattttctccaacccagcatcacaaaagaaattactaaataggtcccacaagtaatcacatatatcattacatttcaacaaa 121  Q
    ||||| ||| |||||| ||||||||||||| |||||||| ||| |||||||| |||||||||||||||| |||  |  ||||| ||||||||||||||||    
T  4905083 taatatttaataagcattaattttctccaatccagcatctcaagagaaattattaaataggtcccacaaataa--atttatattattacatttcaacaaa 4905180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 14 - 122
Target Start/End: Original strand, 34519270 - 34519376
Alignment:
Q  14 ttttacaataatacttattaagcactaattttctccaacccagcatcacaaaagaaattactaaataggtcccacaagtaatcacatatatcattacatt 113  Q
    |||||| |||||| ||| ||||||| |||||||||||  |||||| | |||||||||||| |||||||||||||||| ||||    ||||||||||||||    
T  34519270 ttttaccataatagttaataagcaccaattttctccagtccagcacctcaaaagaaattattaaataggtcccacaaataat--tctatatcattacatt 34519367  T
Q  114 tcaacaaaa 122  Q
    | |||||||    
T  34519368 ttaacaaaa 34519376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 99 - 154
Target Start/End: Original strand, 4167236 - 4167291
Alignment:
Q  99 atatatcattacatttcaacaaaaaattatgtatttcatcatgatttatcaaatgg 154  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||||| ||||||    
T  4167236 atatatcattacatttcgacaaaaaattatttatttcatcatgatttattaaatgg 4167291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 12287365 - 12287246
Alignment:
Q  1 tccacataacttattttacaataatacttattaagcactaattttctccaacccagcatcacaaaagaaattactaaataggtcccacaagtaatcacat 100  Q
    ||||||| ||| |||||||  ||||||||| | ||||| |||||||||||| |||||| |  ||||||||||| |||||| |||| |||| ||||    |    
T  12287365 tccacatcactcattttaccgtaatacttaatgagcaccaattttctccaatccagcaccttaaaagaaattattaaataagtccaacaaataat--ttt 12287268  T
Q  101 atatcattacatttcaacaaaa 122  Q
    ||||||||||||||||||||||    
T  12287267 atatcattacatttcaacaaaa 12287246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 27164407 - 27164300
Alignment:
Q  13 attttacaataatacttattaagcactaattttctccaacccagcatcacaaaagaaattactaaataggtcccacaagtaatcacatatatcattacat 112  Q
    |||||| | ||||| ||| ||| ||| |||||||||||||||| || | |||||||||||||||||||||||  |||| ||||    |||||||||||||    
T  27164407 attttatagtaatatttaataaacaccaattttctccaacccaacacctcaaaagaaattactaaataggtcttacaaataat--tctatatcattacat 27164310  T
Q  113 ttcaacaaaa 122  Q
    ||||||||||    
T  27164309 ttcaacaaaa 27164300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 41966088 - 41966195
Alignment:
Q  13 attttacaataatacttattaagcactaattttctccaacccagcatcacaaaagaaattactaaataggtcccacaagtaatcacatatatcattacat 112  Q
    |||||||| ||||||||| ||||||  |||||||||||||||| || | |||||||||||| |||||||| | || || ||||    |||||||||||||    
T  41966088 attttacagtaatacttaataagcatcaattttctccaacccaacacctcaaaagaaattattaaataggactcataaataat--tttatatcattacat 41966185  T
Q  113 ttcaacaaaa 122  Q
    ||||||||||    
T  41966186 ttcaacaaaa 41966195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 183 - 288
Target Start/End: Original strand, 35015880 - 35015985
Alignment:
Q  183 tgcttccataaccactcttcaccataggcacccaaatattatactccataacaaagatgtctttttaatatggtgctaaatagatgaaacacacaccatt 282  Q
    |||||||||| ||||  ||| | |||| || ||| ||||||||||||| ||  | | || || ||||||||||||||||||||||||||||| |||||||    
T  35015880 tgcttccatagccaccattctctatagccatccatatattatactccacaatgagggtgcctatttaatatggtgctaaatagatgaaacacccaccatt 35015979  T
Q  283 gtggat 288  Q
    ||||||    
T  35015980 gtggat 35015985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 35015704 - 35015785
Alignment:
Q  4 acataacttattttacaataatacttattaagcactaattttctccaacccagcatcacaaaagaaattactaaataggtcc 85  Q
    |||| ||||||||||   ||||||||| ||| |||| ||||||||||||||| || |  |||||||||||||||||||||||    
T  35015704 acatcacttattttatggtaatacttaataaacactcattttctccaacccatcaccttaaaagaaattactaaataggtcc 35015785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 6182744 - 6182639
Alignment:
Q  13 attttacaataatacttattaagcactaattttctccaacccagcatcacaaaagaaattactaaataggtcccacaagtaatcacatatatcattacat 112  Q
    |||||||  ||||||||| ||||||| | |||||| |||||||||| | ||||| |||||| |||||||||| ||||| ||||    |||||||||||||    
T  6182744 attttacggtaatacttaataagcaccacttttcttcaacccagcacctcaaaataaattattaaataggtctcacaaataattt--tatatcattacat 6182647  T
Q  113 ttcaacaa 120  Q
    || |||||    
T  6182646 tttaacaa 6182639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 288
Target Start/End: Original strand, 35016101 - 35016143
Alignment:
Q  246 tttaatatggtgctaaatagatgaaacacacaccattgtggat 288  Q
    ||||||||||||||||||||||||| ||| |||||||||||||    
T  35016101 tttaatatggtgctaaatagatgaagcacccaccattgtggat 35016143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 32 - 120
Target Start/End: Complemental strand, 33037473 - 33037387
Alignment:
Q  32 taagcactaattttctccaacccagcatcacaaaagaaattactaaataggtcccacaagtaatcacatatatcattacatttcaacaa 120  Q
    ||||||| | ||||||||||||||||| | ||||| |||||| ||||||||| |||||| ||||    ||||||||||||||| |||||    
T  33037473 taagcaccacttttctccaacccagcacctcaaaataaattattaaataggttccacaaataat--tttatatcattacattttaacaa 33037387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 965510 - 965400
Alignment:
Q  13 attttacaataatacttattaagcactaattttctccaacccagcatcacaaaagaaat---tactaaataggtcccacaagtaatcacatatatcatta 109  Q
    |||||||  ||||||||| ||| |||  ||||||||||||||| || | ||||||||||   || ||||||||| |||||| ||||    ||||||||||    
T  965510 attttacgctaatacttaataaacacccattttctccaacccaacacctcaaaagaaataattattaaataggttccacaaataattt--tatatcatta 965413  T
Q  110 catttcaacaaaa 122  Q
    |||||||||||||    
T  965412 catttcaacaaaa 965400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 1778905 - 1778798
Alignment:
Q  13 attttacaataatacttattaagcactaattttctccaacccagcatcacaaaagaaattactaaataggtcccacaagtaatcacatatatcattacat 112  Q
    |||||||  ||||| ||| ||| ||| |||||||||||| ||| || | |||||||||||| ||||| | ||| |||| ||||    |||||||||||||    
T  1778905 attttacggtaatatttaataaacaccaattttctccaatccaacacctcaaaagaaattattaaattgatcctacaaataattt--tatatcattacat 1778808  T
Q  113 ttcaacaaaa 122  Q
    ||||||||||    
T  1778807 ttcaacaaaa 1778798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 246 - 296
Target Start/End: Original strand, 29235707 - 29235757
Alignment:
Q  246 tttaatatggtgctaaatagatgaaacacacaccattgtggatggcctaag 296  Q
    |||||||||||| |||||||||||||| | ||||||||| ||||| |||||    
T  29235707 tttaatatggtgttaaatagatgaaacgcccaccattgtagatggtctaag 29235757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 183 - 233
Target Start/End: Original strand, 34519436 - 34519486
Alignment:
Q  183 tgcttccataaccactcttcaccataggcacccaaatattatactccataa 233  Q
    |||||||||| ||||  ||| ||||||||||||||||||| ||||||||||    
T  34519436 tgcttccatagccaccattctccataggcacccaaatattttactccataa 34519486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 295
Target Start/End: Complemental strand, 27743856 - 27743807
Alignment:
Q  246 tttaatatggtgctaaatagatgaaacacacaccattgtggatggcctaa 295  Q
    |||||| | |||||||||| ||||||||| ||||||||||||||| ||||    
T  27743856 tttaatgtagtgctaaatacatgaaacacccaccattgtggatggtctaa 27743807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 240 - 296
Target Start/End: Complemental strand, 1911016 - 1910960
Alignment:
Q  240 tgtctttttaatatggtgctaaatagatgaaacacacaccattgtggatggcctaag 296  Q
    ||||| |||||||| ||||||||||| |||| ||| ||||||| ||||||| |||||    
T  1911016 tgtctatttaatatagtgctaaataggtgaagcacccaccattatggatggtctaag 1910960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 219 - 295
Target Start/End: Original strand, 26576154 - 26576230
Alignment:
Q  219 tattatactccataacaaagatgtctttttaatatggtgctaaatagatgaaacacacaccattgtggatggcctaa 295  Q
    |||||||||||| || | || |||||  |||||||| |||||||||| ||||||||  ||||| |||||||| ||||    
T  26576154 tattatactccacaatagaggtgtctaattaatatgatgctaaataggtgaaacaccaaccatcgtggatggtctaa 26576230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 32689513 - 32689601
Alignment:
Q  1 tccacataacttattttacaataatacttattaagcactaattttctccaacccagcatcacaaaagaaattactaaataggtcccaca 89  Q
    ||||||| ||| ||||||  ||| |||||| ||||||| |||||| | ||| |||||| | ||||| ||||||||||||| || |||||    
T  32689513 tccacatcactcattttatgatagtacttactaagcaccaatttttttcaatccagcaccgcaaaaaaaattactaaatatgttccaca 32689601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 8e-41; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 44707534 - 44707699
Alignment:
Q  1 tccacataacttattttacaataatacttattaagcactaattttctccaacccagcatcacaaaagaaattactaaataggtcccacaagtaatcacat 100  Q
    ||||||| ||| |||||||||||||| ||| ||||||  |||||||||||||| ||||  |||||||||||||| |||||| |||||||| |||| |  |    
T  44707534 tccacattactcattttacaataatatttactaagcatcaattttctccaacc-agcacgacaaaagaaattacaaaatagatcccacaaataatta--t 44707630  T
Q  101 atatcattacatttcaacaaaaaattatgtatttcatcatgatttatcaaatggggtctacaaaaagtg 169  Q
    ||||||||||||||||||||||| |||| |||||||| ||||||||| |||||||||||||||||||||    
T  44707631 atatcattacatttcaacaaaaatttatttatttcattatgatttattaaatggggtctacaaaaagtg 44707699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 25197239 - 25197390
Alignment:
Q  1 tccacataacttattttacaataatacttattaagcactaattttctccaacccagcatcacaaaagaaattactaaataggtcccacaagtaatcacat 100  Q
    ||||||||||| ||||| ||||| |||||| || |||  |||||||||||||||| || ||||||||||||||||||||||||||||||| ||||  |      
T  25197239 tccacataactcattttgcaatagtacttaataggcatcaattttctccaacccaacaccacaaaagaaattactaaataggtcccacaaataattcc-- 25197336  T
Q  101 atatcattacatttcaacaaaaaattatgtatttcatcatgatttatcaaatgg 154  Q
    |||||||||||||||||| |||| |||| |||||||| ||||||||| ||||||    
T  25197337 atatcattacatttcaactaaaatttatttatttcattatgatttattaaatgg 25197390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 13 - 169
Target Start/End: Original strand, 15024506 - 15024660
Alignment:
Q  13 attttacaataatacttattaagcactaattttctccaacccagcatcacaaaagaaattactaaataggtcccacaagtaatcacatatatcattacat 112  Q
    ||||||||||| || ||| ||| ||  ||||||||| ||||||| | ||||||| |||||| |||||||||||||||| ||||  || ||||||||| ||    
T  15024506 attttacaatagtatttaataaacatcaattttctctaacccagtaccacaaaataaattattaaataggtcccacaaataatt-ca-atatcattatat 15024603  T
Q  113 ttcaacaaaaaattatgtatttcatcatgatttatcaaatggggtctacaaaaagtg 169  Q
    |||||||||||  ||| |||||||| ||||||||| |||||||||  ||||||||||    
T  15024604 ttcaacaaaaatatatttatttcattatgatttattaaatggggttcacaaaaagtg 15024660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 183 - 290
Target Start/End: Complemental strand, 36755220 - 36755113
Alignment:
Q  183 tgcttccataaccactcttcaccataggcacccaaatattatactccataacaaagatgtctttttaatatggtgctaaatagatgaaacacacaccatt 282  Q
    |||||||||| |||| |||| |||||| |||||| ||||||||||||| ||   || ||||| ||||||||||||||||||||||||| ||| |||||||    
T  36755220 tgcttccatagccacccttctccatagccacccatatattatactccacaatggaggtgtctatttaatatggtgctaaatagatgaagcacccaccatt 36755121  T
Q  283 gtggatgg 290  Q
    ||||||||    
T  36755120 gtggatgg 36755113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 55692890 - 55693010
Alignment:
Q  1 tccacataacttattttacaataatacttattaagcactaattttctccaacccagcatcacaaaagaaattactaaataggtcccacaagtaatcacat 100  Q
    ||||||| ||| |||||||  ||||||||  ||| ||| |||||||||||||||||||||  ||||||||||| |||||||||||||||| ||||    |    
T  55692890 tccacatcactcattttactgtaatacttgataaacaccaattttctccaacccagcatcttaaaagaaattattaaataggtcccacaaataat-tttt 55692988  T
Q  101 atatcattacatttcaacaaaa 122  Q
    ||||||||||||||||||||||    
T  55692989 atatcattacatttcaacaaaa 55693010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 20 - 157
Target Start/End: Original strand, 28992492 - 28992626
Alignment:
Q  20 aataatacttattaagcactaattttctccaacccagcatcacaaaagaaattactaaataggtcccacaagtaatcacatatatcattacatttcaaca 119  Q
    |||||||| || ||| ||||| ||||||||||||||||| | |||| ||||||||||||||||| |||||| ||||    |||||||||| | ||||||     
T  28992492 aataatacctaataaacactatttttctccaacccagcaccgcaaaggaaattactaaataggttccacaaataat--tctatatcattata-ttcaacc 28992588  T
Q  120 aaaaattatgtatttcatcatgatttatcaaatggggt 157  Q
    |||  |||| |||||||| ||||||||| |||||||||    
T  28992589 aaattttatttatttcattatgatttattaaatggggt 28992626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 13 - 90
Target Start/End: Complemental strand, 37997176 - 37997099
Alignment:
Q  13 attttacaataatacttattaagcactaattttctccaacccagcatcacaaaagaaattactaaataggtcccacaa 90  Q
    ||||||| |||||||||| ||||||| |||||||| |||||||||||| ||||||||||||  ||||| |||||||||    
T  37997176 attttacgataatacttaataagcaccaattttcttcaacccagcatctcaaaagaaattataaaatatgtcccacaa 37997099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 3533846 - 3533940
Alignment:
Q  1 tccacataacttattttacaataatacttattaagcactaattttctccaacccagcatcacaaaagaaattactaaataggtcccacaagtaat 95  Q
    ||||||| ||| |||||||  ||||||||| ||||||| | |||||||||||||| || | ||||| |||||| |||||||||||||||| ||||    
T  3533846 tccacatcactcattttacggtaatacttaataagcaccatttttctccaacccaacacctcaaaataaattattaaataggtcccacaaataat 3533940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 44515901 - 44516008
Alignment:
Q  13 attttacaataatacttattaagcactaattttctccaacccagcatcacaaaagaaattactaaataggtcccacaagtaatcacatatatcattacat 112  Q
    |||||||  ||||||||| ||| |||| |||||||||||||||||| |  ||||||||||| ||||||| |||||| | ||||    |||||||||||||    
T  44515901 attttacggtaatacttaataatcactgattttctccaacccagcaccttaaaagaaattattaaatagatcccactaataat--tttatatcattacat 44515998  T
Q  113 ttcaacaaaa 122  Q
    ||||||||||    
T  44515999 ttcaacaaaa 44516008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 2 - 122
Target Start/End: Complemental strand, 16530115 - 16529998
Alignment:
Q  2 ccacataacttattttacaataatacttattaagcactaattttctccaacccagcatcacaaaagaaattactaaataggtcccacaagtaatcacata 101  Q
    |||||| ||| |||||||  ||||||||| ||||||| |||||||||||| |||||  |  ||||||||||| |||||| ||||||||| ||||    ||    
T  16530115 ccacatcactcattttaccgtaatacttaataagcaccaattttctccaa-ccagctccttaaaagaaattattaaataagtcccacaaataat--ttta 16530019  T
Q  102 tatcattacatttcaacaaaa 122  Q
    |||||||||||||||||||||    
T  16530018 tatcattacatttcaacaaaa 16529998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 15 - 122
Target Start/End: Original strand, 46433045 - 46433150
Alignment:
Q  15 tttacaataatacttattaagcactaattttctccaacccagcatcacaaaagaaattactaaataggtcccacaagtaatcacatatatcattacattt 114  Q
    |||||| ||||||||| |||| |  |||||||||||| ||| || | ||||| |||||| |||||||||||||||| ||||    |||||||||||||||    
T  46433045 tttacagtaatacttaataagtatcaattttctccaatccaacacctcaaaataaattattaaataggtcccacaaataat--tctatatcattacattt 46433142  T
Q  115 caacaaaa 122  Q
    ||||||||    
T  46433143 caacaaaa 46433150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 56192480 - 56192413
Alignment:
Q  22 taatacttattaagcactaattttctccaacccagcatcacaaaagaaattactaaataggtcccaca 89  Q
    ||||||||| ||||||| |||||||||||||||| || | |||||||||||| ||||||||| |||||    
T  56192480 taatacttaataagcaccaattttctccaacccaacacctcaaaagaaattattaaataggttccaca 56192413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 13 - 95
Target Start/End: Original strand, 13205513 - 13205595
Alignment:
Q  13 attttacaataatacttattaagcactaattttctccaacccagcatcacaaaagaaattactaaataggtcccacaagtaat 95  Q
    |||||||  |||| |||| |||||| ||||||||||||||||| || | |||||||||||| |||||| ||||||||| ||||    
T  13205513 attttacggtaatccttactaagcattaattttctccaacccaacacctcaaaagaaattattaaataagtcccacaaataat 13205595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 36284497 - 36284604
Alignment:
Q  13 attttacaataatacttattaagcactaattttctccaacccagcatcacaaaagaaattactaaataggtcccacaagtaatcacatatatcattacat 112  Q
    |||||||  ||| ||||| |||| || ||||||||||||| || ||   |||||||||||| |||||||||||||||| ||||    |||||||||||||    
T  36284497 attttactgtaacacttaataagaaccaattttctccaacacaacacttcaaaagaaattattaaataggtcccacaaataat--tctatatcattacat 36284594  T
Q  113 ttcaacaaaa 122  Q
    ||||||||||    
T  36284595 ttcaacaaaa 36284604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 95
Target Start/End: Original strand, 29844955 - 29845035
Alignment:
Q  15 tttacaataatacttattaagcactaattttctccaacccagcatcacaaaagaaattactaaataggtcccacaagtaat 95  Q
    ||||| |||||||||| ||| ||  | ||||||||||||||||||| ||||| |||||| |||||||||| ||||| ||||    
T  29844955 tttacgataatacttaataaacatcacttttctccaacccagcatctcaaaataaattattaaataggtctcacaaataat 29845035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 12832299 - 12832418
Alignment:
Q  1 tccacataacttattttacaataatacttattaagcactaattttctccaacccagcatcacaaaagaaattactaaataggtcccacaagtaatcacat 100  Q
    ||||||| ||| || ||||  ||||||||| ||||||| ||||||||||  |||| || |  ||||||||||| ||||||||||| |||| ||||    |    
T  12832299 tccacatcactcatgttaccgtaatacttagtaagcaccaattttctccggcccaacacctaaaaagaaattattaaataggtccgacaaataat--ttt 12832396  T
Q  101 atatcattacatttcaacaaaa 122  Q
    |||| |||||||||||||||||    
T  12832397 atattattacatttcaacaaaa 12832418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 218 - 296
Target Start/End: Complemental strand, 37996978 - 37996900
Alignment:
Q  218 atattatactccataacaaagatgtctttttaatatggtgctaaatagatgaaacacacaccattgtggatggcctaag 296  Q
    ||||||||||||| ||  | ||||||| |||||| |||||||||||||| ||| ||  ||||||||||||||| |||||    
T  37996978 atattatactccacaatgaggatgtctatttaatgtggtgctaaatagaagaagcatccaccattgtggatggtctaag 37996900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 45548996 - 45549081
Alignment:
Q  1 tccacataacttattttacaataatacttattaagcactaattttctccaacccagcatcacaaaagaaattactaaataggtccc 86  Q
    ||||||| ||| |||||||  ||||||||| ||||||| | ||||||||||||||||| |  |||| |||||| |||||| |||||    
T  45548996 tccacatcactcattttacggtaatacttaataagcaccacttttctccaacccagcaccttaaaataaattattaaataagtccc 45549081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 295
Target Start/End: Complemental strand, 16529938 - 16529826
Alignment:
Q  183 tgcttccataaccactcttcaccataggcacccaaatattatactccataacaaagatgtctttttaatatggtgctaaatagatgaaacacacaccatt 282  Q
    |||||||||| ||||  ||| |||||| ||||||  |||||||||||| ||    | || || |||||| ||||||||||||| |||| ||| |||||||    
T  16529938 tgcttccatagccaccattctccatagccacccatgtattatactccacaatgggggtgcctatttaatgtggtgctaaataggtgaagcacccaccatt 16529839  T
Q  283 gtggatggcctaa 295  Q
    |||||||| ||||    
T  16529838 gtggatggtctaa 16529826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 122
Target Start/End: Original strand, 3232629 - 3232709
Alignment:
Q  40 aattttctccaacccagcatcacaaaagaaattactaaataggtcccacaagtaatcacatatatcattacatttcaacaaaa 122  Q
    |||||||||||| ||| ||   |||||||||||| |||||||||||||||| ||||    |||||||||| ||||||||||||    
T  3232629 aattttctccaatccaacacttcaaaagaaattattaaataggtcccacaaataat--tctatatcattatatttcaacaaaa 3232709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 282
Target Start/End: Original strand, 38476254 - 38476353
Alignment:
Q  183 tgcttccataaccactcttcaccataggcacccaaatattatactccataacaaagatgtctttttaatatggtgctaaatagatgaaacacacaccatt 282  Q
    |||||||||||||||  ||| |||||  |||||| |||||||||| |||||    | ||||| |||||| ||||||||||||| |||| ||| |||||||    
T  38476254 tgcttccataaccacctttctccataaccacccatatattatacttcataatgggggtgtctatttaatgtggtgctaaataggtgaagcacccaccatt 38476353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 290
Target Start/End: Original strand, 55693073 - 55693180
Alignment:
Q  183 tgcttccataaccactcttcaccataggcacccaaatattatactccataacaaagatgtctttttaatatggtgctaaatagatgaaacacacaccatt 282  Q
    |||||||||| |||| |||| | |||| |||| |   ||||||||||| ||  |||||| || |||||| |||||||||||||||||| ||  || ||||    
T  55693073 tgcttccatagccacccttctctatagtcaccaatgcattatactccacaatgaagatgcctatttaatgtggtgctaaatagatgaagcatccatcatt 55693172  T
Q  283 gtggatgg 290  Q
    ||||||||    
T  55693173 gtggatgg 55693180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 207 - 265
Target Start/End: Original strand, 44707735 - 44707793
Alignment:
Q  207 taggcacccaaatattatactccataacaaagatgtctttttaatatggtgctaaatag 265  Q
    |||||| ||||||||||||||||| ||  | ||||||| |||||||| |||||||||||    
T  44707735 taggcatccaaatattatactccacaatgatgatgtctatttaatatagtgctaaatag 44707793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 121
Target Start/End: Original strand, 54183925 - 54184030
Alignment:
Q  13 attttacaataatacttattaagcactaattttctccaacccagcatcacaaaagaaattactaaataggtcccacaagtaatcacatatatcattacat 112  Q
    ||||||| |||||| ||| ||||||  |||||| | ||  ||||||||  |||| |||||| ||||||||||||| || |||| |  |||||||||||||    
T  54183925 attttactataatatttaataagcatcaatttttttcattccagcatctaaaaa-aaattattaaataggtcccataaataatta--tatatcattacat 54184021  T
Q  113 ttcaacaaa 121  Q
    |||||||||    
T  54184022 ttcaacaaa 54184030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 3e-34; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 40 - 297
Target Start/End: Original strand, 26952390 - 26952643
Alignment:
Q  40 aattttctccaacccagcatcacaaaagaaattactaaataggtcccacaagtaatcacatatatcattacatttcaacaaaaaattatgtatttcatca 139  Q
    |||| |||||||||||||| |||||||||||||| ||||||||||  |||| ||||    |||||||||||||||||||||||| |||| |||||||| |    
T  26952390 aattgtctccaacccagcaccacaaaagaaattattaaataggtctaacaaataattt--tatatcattacatttcaacaaaaa-ttatttatttcatta 26952486  T
Q  140 tgatttatcaaatggggtctacaaaaagtgannnnnnnnnnnntgcttccataaccactcttcaccataggcacccaaatattatactccataacaaaga 239  Q
    |||||||| |||| |||||   |||| | ||            ||||||||||  |||||||  ||||||||||||||||||||||||||| ||   ||     
T  26952487 tgatttattaaatagggtccgtaaaa-gcgaagagagagagggtgcttccatagtcactcttgtccataggcacccaaatattatactccacaatggagg 26952585  T
Q  240 tgtctttttaatatggtgctaaatagatgaaacacacaccattgtggatggcctaagg 297  Q
    ||||| |||||||||||||||||||| |||| ||| ||||||||||||| ||||||||    
T  26952586 tgtctatttaatatggtgctaaataggtgaagcacccaccattgtggatagcctaagg 26952643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 41 - 153
Target Start/End: Complemental strand, 47342564 - 47342454
Alignment:
Q  41 attttctccaacccagcatcacaaaagaaattactaaataggtcccacaagtaatcacatatatcattacatttcaacaaaaaattatgtatttcatcat 140  Q
    ||||||| ||||||| || | |||| ||||||||||||||||||||| ||||||| |  ||||||||||||||||||| |||| |||| |||||||| ||    
T  47342564 attttcttcaacccatcacctcaaatgaaattactaaataggtcccagaagtaatta--tatatcattacatttcaaccaaaatttatttatttcattat 47342467  T
Q  141 gatttatcaaatg 153  Q
    ||||||| |||||    
T  47342466 gatttattaaatg 47342454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 13 - 170
Target Start/End: Complemental strand, 51370580 - 51370424
Alignment:
Q  13 attttacaataatacttattaagcactaattttctccaacccag--catcacaaaagaaattactaaataggtcccacaagtaatcacatatatcattac 110  Q
    ||||||||||| |||||| ||||||| |||||||||||||  ||  || |||||| |||||||| ||||||| ||  ||| ||||  |||||  |||||     
T  51370580 attttacaatagtacttaataagcaccaattttctccaacttagagcaccacaaa-gaaattaccaaataggccctgcaaataatttcatat--cattat 51370484  T
Q  111 atttcaacaaaaaattatgtatttcatcatgatttatcaaatggggtctacaaaaagtga 170  Q
    ||||||||||||| |||| |||||||| ||||||||| |||| || || |||||||||||    
T  51370483 atttcaacaaaaatttatttatttcattatgatttattaaataggatccacaaaaagtga 51370424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 13 - 123
Target Start/End: Complemental strand, 48962465 - 48962357
Alignment:
Q  13 attttacaataatacttattaagcactaattttctccaacccagcatcacaaaagaaattactaaataggtcccacaagtaatcacatatatcattacat 112  Q
    |||||||  ||||||||| |||||||| |||||||||||| ||||| | |||||||||||| ||||||||||  |||| ||||    ||||||||||||     
T  48962465 attttacggtaatacttaataagcactcattttctccaactcagcacctcaaaagaaattattaaataggtcatacaaataat--tttatatcattacaa 48962368  T
Q  113 ttcaacaaaaa 123  Q
    |||||||||||    
T  48962367 ttcaacaaaaa 48962357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 183 - 296
Target Start/End: Complemental strand, 27371795 - 27371681
Alignment:
Q  183 tgcttccataaccactcttcac-cataggcacccaaatattatactccataacaaagatgtctttttaatatggtgctaaatagatgaaacacacaccat 281  Q
    |||||||||||||||| ||  | |||||||| ||||||||||||||||| ||    | || || |||| ||| ||| ||||||| |||||||| ||||||    
T  27371795 tgcttccataaccacttttttctcataggcatccaaatattatactccacaaagggggtgcctatttagtatagtgttaaataggtgaaacacccaccat 27371696  T
Q  282 tgtggatggcctaag 296  Q
    |||||||||||||||    
T  27371695 tgtggatggcctaag 27371681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 22 - 122
Target Start/End: Complemental strand, 11137867 - 11137769
Alignment:
Q  22 taatacttattaagcactaattttctccaacccagcatcacaaaagaaattactaaataggtcccacaagtaatcacatatatcattacatttcaacaaa 121  Q
    ||||||||| |||| ||||||||||||||||||| || | |||||||| ||| ||||||| ||| |||| ||||    ||||||||| ||||||||||||    
T  11137867 taatacttaataagtactaattttctccaacccaacacctcaaaagaagttattaaatagatcctacaaataat--tttatatcattgcatttcaacaaa 11137770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 183 - 288
Target Start/End: Complemental strand, 37333282 - 37333177
Alignment:
Q  183 tgcttccataaccactcttcaccataggcacccaaatattatactccataacaaagatgtctttttaatatggtgctaaatagatgaaacacacaccatt 282  Q
    |||||||||| |||| |||| || || ||||| | || |||||||||| ||  | ||||||| |||||| ||||||||||||| |||| ||| |||||||    
T  37333282 tgcttccatagccacccttctccgtaagcaccgatatgttatactccacaatgaggatgtctatttaatgtggtgctaaataggtgaagcacccaccatt 37333183  T
Q  283 gtggat 288  Q
    ||||||    
T  37333182 gtggat 37333177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 122
Target Start/End: Original strand, 26919183 - 26919292
Alignment:
Q  11 ttattttacaataatacttattaagcactaattttctccaacccagcatcacaaaagaaattactaaataggtcccacaagtaatcacatatatcattac 110  Q
    |||||||||  ||||| |||||||| || || |||||| |||  || ||| |||||||||||| ||||||||||||| || ||||    |||||||||||    
T  26919183 ttattttacggtaatatttattaaggacaaactttctctaacatagtatctcaaaagaaattattaaataggtcccataaataat--tttatatcattac 26919280  T
Q  111 atttcaacaaaa 122  Q
    ||||||||||||    
T  26919281 atttcaacaaaa 26919292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 122
Target Start/End: Original strand, 29078728 - 29078833
Alignment:
Q  15 tttacaataatacttattaagcactaattttctccaacccagcatcacaaaagaaattactaaataggtcccacaagtaatcacatatatcattacattt 114  Q
    ||||| |||||||||| ||||||  |||||||||||| ||| ||   ||||| |||||| ||||||||||||| || ||||    |||||||||||||||    
T  29078728 tttacgataatacttaataagcatcaattttctccaatccaacacttcaaaataaattattaaataggtcccataaataat--tctatatcattacattt 29078825  T
Q  115 caacaaaa 122  Q
    ||||||||    
T  29078826 caacaaaa 29078833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 32 - 95
Target Start/End: Original strand, 19332041 - 19332104
Alignment:
Q  32 taagcactaattttctccaacccagcatcacaaaagaaattactaaataggtcccacaagtaat 95  Q
    ||||||| |||||||||||||||| || | |||||||||||| |||||| ||||||||| ||||    
T  19332041 taagcaccaattttctccaacccaacacctcaaaagaaattattaaataagtcccacaaataat 19332104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 22 - 122
Target Start/End: Original strand, 20935990 - 20936088
Alignment:
Q  22 taatacttattaagcactaattttctccaacccagcatcacaaaagaaattactaaataggtcccacaagtaatcacatatatcattacatttcaacaaa 121  Q
    ||||||||| |||| || |||||||| ||| ||| || | ||||| |||||| |||||||| ||||||| ||||    ||||||||||||||||||||||    
T  20935990 taatacttaataagtaccaattttcttcaatccaacacctcaaaataaattattaaataggccccacaaataattc--tatatcattacatttcaacaaa 20936087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 19554750 - 19554818
Alignment:
Q  13 attttacaataatacttattaagcactaattttctccaacccagcatcacaaaagaaattactaaatag 81  Q
    |||||||| ||||||| | |||| |  ||||||||||||||||||| | |||||||||||| |||||||    
T  19554750 attttacagtaatactgaataagaatcaattttctccaacccagcacctcaaaagaaattattaaatag 19554818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 20826457 - 20826382
Alignment:
Q  13 attttacaataatacttattaagcactaattttctccaacccagcatcacaaaagaaattactaaataggtcccac 88  Q
    |||||||  ||||||||| ||||||  |||||||||||||||| || | ||||| |||||| | ||||||||||||    
T  20826457 attttacggtaatacttaataagcatcaattttctccaacccaacacctcaaaataaattattgaataggtcccac 20826382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 204 - 295
Target Start/End: Complemental strand, 18090451 - 18090360
Alignment:
Q  204 ccataggcacccaaatattatactccataacaa---agatgtctttttaatatggtgctaaatagatgaaacacacaccattgtggatggcctaa 295  Q
    ||||||||||||| |||||||||   |||||||   || || || |||||| |||||||||||||||||| ||  ||||||||||||||| ||||    
T  18090451 ccataggcacccatatattatac---ataacaatggaggtgcctatttaatgtggtgctaaatagatgaagcatccaccattgtggatggtctaa 18090360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 88
Target Start/End: Complemental strand, 44543268 - 44543212
Alignment:
Q  32 taagcactaattttctccaacccagcatcacaaaagaaattactaaataggtcccac 88  Q
    |||||||  ||||||||||||||| ||||  ||||||||||| ||||||||| ||||    
T  44543268 taagcaccgattttctccaacccaacatcttaaaagaaattattaaataggttccac 44543212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 3e-34; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 48941372 - 48941539
Alignment:
Q  1 tccacataacttattttacaataatacttattaagcactaattttctccaacccagcatcacaaaagaaattactaaataggtcccacaagtaatcacat 100  Q
    ||||||| ||| |||||||||||||| ||| ||||||| ||||||||||||||||||| ||||||||||||||| |||||| | | | || ||||  |      
T  48941372 tccacattactcattttacaataatatttaataagcaccaattttctccaacccagcaccacaaaagaaattacgaaatagattctataaataatttc-- 48941469  T
Q  101 atatcattacatttcaacaaaaaattatgtatttcatcatgatttatcaaatggggtctacaaaaagtga 170  Q
    ||||||||||||||||| ||||| |||| |||||||| ||||||| | |||||||||| |||||||||||    
T  48941470 atatcattacatttcaataaaaatttatttatttcattatgattttttaaatggggtccacaaaaagtga 48941539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 13 - 288
Target Start/End: Original strand, 12140725 - 12140995
Alignment:
Q  13 attttacaataatacttattaagcactaattttctccaacccagcatcacaaaagaaattactaaataggtcccacaagtaatcacatatatcattacat 112  Q
    |||||| |||| |||||| || |||| |||||||||||||| || | ||||||||||||||||||||| ||||||||| ||||    |||||||||||||    
T  12140725 attttataatagtacttactaggcaccaattttctccaacctagtaccacaaaagaaattactaaataagtcccacaaataat---ttatatcattacat 12140821  T
Q  113 ttcaacaaaaaattatgtatttcatcatgatttatcaaatggggtctacaaaaagtgannnnnnnnnnnntgcttccataaccactcttcaccataggca 212  Q
    ||||| | ||| |||| || ||||| ||||||||| |||| ||||| |||||| ||||            || ||||||| |||| |||| | | |||||    
T  12140822 ttcaatataaatttatttaattcattatgatttattaaatagggtccacaaaaggtga--agagagagggtggttccatagccacccttctcgacaggca 12140919  T
Q  213 cccaaatattatactccataacaaagatgtctttttaatatggtgctaaatagatgaaacacacaccattgtggat 288  Q
    | |||||||||||||||| || || |||| || || ||||| ||| ||||||| |||||||| |||||||||||||    
T  12140920 cacaaatattatactccacaataaggatgcctattaaatatagtgttaaataggtgaaacacccaccattgtggat 12140995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 2 - 122
Target Start/End: Original strand, 20381052 - 20381170
Alignment:
Q  2 ccacataacttattttacaataatacttattaagcactaattttctccaacccagcatcacaaaagaaattactaaataggtcccacaagtaatcacata 101  Q
    |||||| ||| |||||||  ||||||||| ||||||  ||||||||||||||||||| |  ||||| ||||| |||||||| ||||||| ||||    ||    
T  20381052 ccacatcactcattttaccgtaatacttaataagcatcaattttctccaacccagcaccttaaaaggaattattaaatagggcccacaaataat--ttta 20381149  T
Q  102 tatcattacatttcaacaaaa 122  Q
    |||||||||||||||||||||    
T  20381150 tatcattacatttcaacaaaa 20381170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 22 - 122
Target Start/End: Complemental strand, 29701216 - 29701118
Alignment:
Q  22 taatacttattaagcactaattttctccaacccagcatcacaaaagaaattactaaataggtcccacaagtaatcacatatatcattacatttcaacaaa 121  Q
    ||||||||| ||| ||| |||||||||||||||||||||  ||||||||||| ||| ||||||||| || |||  | |||||||| ||||||||||||||    
T  29701216 taatacttaataaacaccaattttctccaacccagcatcttaaaagaaattattaactaggtcccagaaataa--atatatatcactacatttcaacaaa 29701119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 13 - 90
Target Start/End: Original strand, 50377758 - 50377835
Alignment:
Q  13 attttacaataatacttattaagcactaattttctccaacccagcatcacaaaagaaattactaaataggtcccacaa 90  Q
    |||||||  ||||||||| |||| || ||||||||||||||||||| | |||||||||||| ||||||||||||||||    
T  50377758 attttacggtaatacttaataagtaccaattttctccaacccagcacctcaaaagaaattattaaataggtcccacaa 50377835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 22 - 155
Target Start/End: Original strand, 9693877 - 9694007
Alignment:
Q  22 taatacttattaagcactaattttctccaacccagcatcacaaaagaaattactaaataggtcccacaagtaatcacatatatcattacatttcaacaaa 121  Q
    ||||||||| ||||||| |||||| | |||| || || | || |||||||||| |||||||| |||||| ||||    ||||||||||||||||||| ||    
T  9693877 taatacttaataagcaccaattttattcaacacaacacctcacaagaaattacaaaataggttccacaaataattc--tatatcattacatttcaac-aa 9693973  T
Q  122 aaattatgtatttcatcatgatttatcaaatggg 155  Q
    || |||| |||||||| ||||||||| |||||||    
T  9693974 aatttatttatttcattatgatttatgaaatggg 9694007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 155
Target Start/End: Original strand, 16255286 - 16255427
Alignment:
Q  11 ttattttacaataatacttattaagcactaattttctccaacccagcatcacaaaagaaattactaaataggtcccacaagtaatcacatatatcattac 110  Q
    |||||||||  ||||||||| ||||||  ||||||||||||||||||| | |||||||||||| |||||  ||| ||||| ||||    ||||||||| |    
T  16255286 ttattttacggtaatacttaataagcatcaattttctccaacccagcacctcaaaagaaattattaaatttgtctcacaaataat--tctatatcattcc 16255383  T
Q  111 atttcaacaaaaaattatgtatttcatcatgatttatcaaatggg 155  Q
    |||||||| |||| |||| ||||| || | ||||||| |||||||    
T  16255384 atttcaac-aaaatttatttattttattaagatttattaaatggg 16255427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 50378146 - 50378240
Alignment:
Q  26 acttattaagcactaattttctccaacccagcatcacaaaagaaattactaaataggtcccacaagtaatcacatatatcattacatttcaacaaaa 122  Q
    ||||| ||||||| |||||||||||| |||||| | |||||||||||| ||||||||||| | || ||||    |||||||||||||||||||||||    
T  50378146 acttaataagcaccaattttctccaatccagcacctcaaaagaaattattaaataggtcctataaataat--tttatatcattacatttcaacaaaa 50378240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 183 - 295
Target Start/End: Original strand, 8259459 - 8259571
Alignment:
Q  183 tgcttccataaccactcttcaccataggcacccaaatattatactccataacaaagatgtctttttaatatggtgctaaatagatgaaacacacaccatt 282  Q
    ||||||||||||||| |||| |||||| |||||| ||||||||| ||| ||    | || || ||||||||| ||||||||||||||| ||| |||||||    
T  8259459 tgcttccataaccacccttctccatagccacccatatattataccccacaatgggggtgcctatttaatatgatgctaaatagatgaagcacccaccatt 8259558  T
Q  283 gtggatggcctaa 295  Q
    || ||||| ||||    
T  8259559 gtagatggtctaa 8259571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 32 - 122
Target Start/End: Original strand, 32714120 - 32714208
Alignment:
Q  32 taagcactaattttctccaacccagcatcacaaaagaaattactaaataggtcccacaagtaatcacatatatcattacatttcaacaaaa 122  Q
    ||||||| |||||||||||||||| || | |||||||||||| |||||| |||| |||| ||||    |||||||||||||||||||||||    
T  32714120 taagcaccaattttctccaacccatcacctcaaaagaaattattaaataagtcctacaaataat--tttatatcattacatttcaacaaaa 32714208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 9 - 122
Target Start/End: Complemental strand, 48379736 - 48379625
Alignment:
Q  9 acttattttacaataatacttattaagcactaattttctccaacccagcatcacaaaagaaattactaaataggtcccacaagtaatcacatatatcatt 108  Q
    |||||||||||  ||||||||| ||| || ||||||||||||||| | || |  ||||||||||| |||||||||||||||| || |    | |||||||    
T  48379736 acttattttaccgtaatacttaataaacattaattttctccaaccaaacaccttaaaagaaattattaaataggtcccacaaatatt--tttgtatcatt 48379639  T
Q  109 acatttcaacaaaa 122  Q
    ||||||||||||||    
T  48379638 acatttcaacaaaa 48379625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 22 - 122
Target Start/End: Original strand, 25388921 - 25389019
Alignment:
Q  22 taatacttattaagcactaattttctccaacccagcatcacaaaagaaattactaaataggtcccacaagtaatcacatatatcattacatttcaacaaa 121  Q
    ||||||||| ||||||  |||||| ||||||||| || |  ||||||||||||||||||||||| | || ||||    ||||||||||||||||||||||    
T  25388921 taatacttaataagcatcaattttttccaacccaacaccttaaaagaaattactaaataggtcctataaataat--tttatatcattacatttcaacaaa 25389018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 240 - 289
Target Start/End: Original strand, 48941593 - 48941642
Alignment:
Q  240 tgtctttttaatatggtgctaaatagatgaaacacacaccattgtggatg 289  Q
    ||||| ||||||||||||||||||||||||||||| ||||||| ||||||    
T  48941593 tgtctatttaatatggtgctaaatagatgaaacacccaccattatggatg 48941642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 183 - 289
Target Start/End: Original strand, 50377924 - 50378032
Alignment:
Q  183 tgcttccataaccactcttcaccataggcacccaaatattatactccataacaaagatgtcttttta--atatggtgctaaatagatgaaacacacacca 280  Q
    ||||||||||||||| || | ||||||||||||| ||||||||||| | ||   || ||||| ||||  |||||||| ||||||| ||||| ||||||||    
T  50377924 tgcttccataaccaccctcctccataggcacccatatattatactctacaatggaggtgtctatttaatatatggtgttaaataggtgaaatacacacca 50378023  T
Q  281 ttgtggatg 289  Q
    || ||||||    
T  50378024 ttatggatg 50378032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 183 - 274
Target Start/End: Original strand, 16255455 - 16255545
Alignment:
Q  183 tgcttccataaccactcttcaccataggcacccaaatattatactccataacaaagatgtctttttaatatggtgctaaatagatgaaacac 274  Q
    |||||||||| |||||||||  |||||||||||| |||||||||| |||||  | | ||| | |||||| ||||||||||||| ||||||||    
T  16255455 tgcttccatagccactcttctacataggcacccatatattatacttcataatgagggtgt-tatttaatgtggtgctaaataggtgaaacac 16255545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 95
Target Start/End: Complemental strand, 14625219 - 14625145
Alignment:
Q  21 ataatacttattaagcactaattttctccaacccagcatcacaaaagaaattactaaataggtcccacaagtaat 95  Q
    |||||||||| ||| ||| | |||||||||| |||||| | ||||| |||||| |||||||||||||||| ||||    
T  14625219 ataatacttaataaacaccatttttctccaatccagcacctcaaaataaattattaaataggtcccacaaataat 14625145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 246 - 295
Target Start/End: Original strand, 26451977 - 26452026
Alignment:
Q  246 tttaatatggtgctaaatagatgaaacacacaccattgtggatggcctaa 295  Q
    |||||||| ||||||||||||| |||||| ||||||||||||||| ||||    
T  26451977 tttaatatagtgctaaatagataaaacacccaccattgtggatggtctaa 26452026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 42693316 - 42693376
Alignment:
Q  13 attttacaataatacttattaagcactaattttctccaacccagcatcacaaaagaaatta 73  Q
    |||||||  ||||||||| ||||||| |||||||||||||| |||| | ||||||||||||    
T  42693316 attttacggtaatacttaataagcaccaattttctccaacctagcacctcaaaagaaatta 42693376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 95
Target Start/End: Complemental strand, 33016620 - 33016565
Alignment:
Q  40 aattttctccaacccagcatcacaaaagaaattactaaataggtcccacaagtaat 95  Q
    |||||||||||||||| || | |||||||||||| ||||||||| |||||| ||||    
T  33016620 aattttctccaacccaacacctcaaaagaaattattaaataggttccacaaataat 33016565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 15342687 - 15342806
Alignment:
Q  1 tccacataacttattttacaataatacttattaagcactaattttctccaacccagcatcacaaaagaaattactaaataggtcccacaagtaatcacat 100  Q
    ||||||| ||| |||||||  ||||| ||| ||| ||| |||||||| ||||||||||    |||| |||||| ||||||||||| |||| ||||    |    
T  15342687 tccacatcactcattttactgtaatatttaataaacaccaattttcttcaacccagcactttaaaataaattattaaataggtcctacaaataattt--t 15342784  T
Q  101 atatcattacatttcaacaaaa 122  Q
    ||||||||| ||||||||||||    
T  15342785 atatcattatatttcaacaaaa 15342806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 26450862 - 26450955
Alignment:
Q  1 tccacataacttattttacaataatacttattaagcactaattttctccaacccagcatcacaaaagaaattactaaataggtcccacaagtaat 95  Q
    ||||||| ||| ||||||   ||||||||| |||||||  |||||||||||||||||| | ||||| |||||| | ||||||||| |||| ||||    
T  26450862 tccacatcactcattttatgctaatacttaataagcacccattttctccaacccagcacctcaaaa-aaattattgaataggtcctacaaataat 26450955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 246 - 286
Target Start/End: Original strand, 20381275 - 20381315
Alignment:
Q  246 tttaatatggtgctaaatagatgaaacacacaccattgtgg 286  Q
    |||||||||||||||||||| |||||||  |||||||||||    
T  20381275 tttaatatggtgctaaataggtgaaacatccaccattgtgg 20381315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 246 - 290
Target Start/End: Complemental strand, 48379519 - 48379475
Alignment:
Q  246 tttaatatggtgctaaatagatgaaacacacaccattgtggatgg 290  Q
    |||||| ||||||||||||| |||| ||| |||||||||||||||    
T  48379519 tttaatgtggtgctaaataggtgaagcacccaccattgtggatgg 48379475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 246 - 290
Target Start/End: Complemental strand, 51776590 - 51776546
Alignment:
Q  246 tttaatatggtgctaaatagatgaaacacacaccattgtggatgg 290  Q
    |||||| ||||||||||||| |||||||| ||||||| |||||||    
T  51776590 tttaatgtggtgctaaataggtgaaacacccaccattatggatgg 51776546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 4e-27; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 23419140 - 23419021
Alignment:
Q  1 tccacataacttattttacaataatacttattaagcactaattttctccaacccagcatcacaaaagaaattactaaataggtcccacaagtaatcacat 100  Q
    ||||||| |||||||||||| ||||||||| |||||||| |||||||||||||||||| | |||||||||||| |||||||| || |||| ||||    |    
T  23419140 tccacatcacttattttacagtaatacttaataagcactgattttctccaacccagcacctcaaaagaaattattaaataggccctacaaataat--ttt 23419043  T
Q  101 atatcattacatttcaacaaaa 122  Q
    ||||||||||||||||||||||    
T  23419042 atatcattacatttcaacaaaa 23419021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 22 - 122
Target Start/End: Original strand, 35377779 - 35377877
Alignment:
Q  22 taatacttattaagcactaattttctccaacccagcatcacaaaagaaattactaaataggtcccacaagtaatcacatatatcattacatttcaacaaa 121  Q
    ||||||||| ||||||||||||||||||||||||||| | |||||||||||| |||||||| |  |||| ||||    ||||||||||||||||||||||    
T  35377779 taatacttagtaagcactaattttctccaacccagcacctcaaaagaaattattaaatagggcatacaaataat--tttatatcattacatttcaacaaa 35377876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 16562017 - 16561909
Alignment:
Q  13 attttacaataatacttattaagcactaattttctccaacccagcatcac-aaaagaaattactaaataggtcccacaagtaatcacatatatcattaca 111  Q
    |||||||||||||||||| |||| || |||| |||||||||||||  | | |||| |||||| |||||| ||||||||| ||||   ||||||||||| |    
T  16562017 attttacaataatacttaataagtaccaattatctccaacccagcccctcaaaaaaaaattattaaataagtcccacaaataat--tatatatcattata 16561920  T
Q  112 tttcaacaaaa 122  Q
    |||||||||||    
T  16561919 tttcaacaaaa 16561909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 34 - 122
Target Start/End: Complemental strand, 27903803 - 27903717
Alignment:
Q  34 agcactaattttctccaacccagcatcacaaaagaaattactaaataggtcccacaagtaatcacatatatcattacatttcaacaaaa 122  Q
    ||||| ||||||||| |||||| ||||  ||||||| ||| |||||||||||||||| ||||    ||||||||||||||| |||||||    
T  27903803 agcaccaattttctcaaacccaacatctaaaaagaagttattaaataggtcccacaaataat--tttatatcattacattttaacaaaa 27903717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 240 - 290
Target Start/End: Original strand, 9622424 - 9622474
Alignment:
Q  240 tgtctttttaatatggtgctaaatagatgaaacacacaccattgtggatgg 290  Q
    ||||| |||||| ||||||||||||| |||| ||| |||||||||||||||    
T  9622424 tgtctatttaatgtggtgctaaataggtgaagcacccaccattgtggatgg 9622474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 10667309 - 10667415
Alignment:
Q  13 attttacaataatacttattaagcactaattttctccaacccagcatcacaaaagaaattactaaataggtcccacaagtaatcacatatatcattacat 112  Q
    |||||||  ||||||||| ||||||  ||||||||||||||| | ||  ||||| |||||| |||||||||| ||||| ||||    |||||||||||||    
T  10667309 attttacggtaatacttaataagcatcaattttctccaaccctgaatttcaaaa-aaattattaaataggtctcacaaataat--tctatatcattacat 10667405  T
Q  113 ttcaacaaaa 122  Q
    || |||||||    
T  10667406 tttaacaaaa 10667415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 3e-25; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 32184062 - 32183771
Alignment:
Q  1 tccacataacttattttacaataatacttattaagcactaattttctccaacccagcatcacaaaagaaattactaaataggtcccacaagtaatcacat 100  Q
    ||||||| |||||||||||  ||||||||| ||| ||| |||||||||||||||| || | |||||||||||| |||||| |||| |||| ||||    |    
T  32184062 tccacatcacttattttacggtaatacttaataaacaccaattttctccaacccaacacctcaaaagaaattattaaataagtcctacaaataat--ttt 32183965  T
Q  101 atatcattacatttcaacaaaaaattatgtatttcatcatgatttatcaaatggggtctacaaaaagtgannnnnnnnnnnntgcttccataaccactct 200  Q
    |||||||||||||||||| ||||||||| ||||| || | ||||||| ||||| |  | |  |||| |||            |||||||||| ||||  |    
T  32183964 atatcattacatttcaac-aaaaattatttattttattaagatttattaaatgtgacccatgaaaaatgaagaaagagagggtgcttccatagccaccgt 32183866  T
Q  201 tcaccataggcacccaaatattatactccataacaaagatgtctttttaatatggtgctaaatagatgaaacacacaccattgtggatggcctaa 295  Q
    || |||||| |||||| ||||||||||||| ||    | || || ||||||||| ||||||||||||||| ||| ||||||||||||||| ||||    
T  32183865 tctccatagccacccatatattatactccacaatgggggtgcctatttaatatgatgctaaatagatgaagcacccaccattgtggatggtctaa 32183771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 22 - 95
Target Start/End: Complemental strand, 13185714 - 13185641
Alignment:
Q  22 taatacttattaagcactaattttctccaacccagcatcacaaaagaaattactaaataggtcccacaagtaat 95  Q
    ||||||||| ||||||| ||||||||||||||||||| | |||||||||||| |||||| ||||||||| ||||    
T  13185714 taatacttaataagcaccaattttctccaacccagcagctcaaaagaaattattaaataagtcccacaaataat 13185641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 15 - 95
Target Start/End: Complemental strand, 15489645 - 15489565
Alignment:
Q  15 tttacaataatacttattaagcactaattttctccaacccagcatcacaaaagaaattactaaataggtcccacaagtaat 95  Q
    ||||| |||||||||| ||||||| |||||||||||||||| ||   |||||||||||| |||||||||||||||| ||||    
T  15489645 tttacgataatacttaataagcaccaattttctccaacccaacacatcaaaagaaattattaaataggtcccacaaataat 15489565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 183 - 287
Target Start/End: Complemental strand, 21208260 - 21208156
Alignment:
Q  183 tgcttccataaccactcttcaccataggcacccaaatattatactccataacaaagatgtctttttaatatggtgctaaatagatgaaacacacaccatt 282  Q
    |||||||||| ||||||||| |||||| |||||| ||||||| ||||| || || | || || ||||||| |||| ||||||| |||| |||||||||||    
T  21208260 tgcttccatagccactcttctccatagccacccatatattattctccacaataagggtgcctatttaatacggtgttaaataggtgaagcacacaccatt 21208161  T
Q  283 gtgga 287  Q
    |||||    
T  21208160 gtgga 21208156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 22747243 - 22747125
Alignment:
Q  1 tccacataacttattttacaataatacttattaagcactaattttctccaacccagcatcacaaaagaaattactaaataggtcccacaagtaatcacat 100  Q
    ||||||| ||| |||||||  ||||||||| |||||   ||||||||||||||||| | | |||||||||||| ||||||||||  |||| ||||    |    
T  22747243 tccacatcactcattttacggtaatacttaataagcgtcaattttctccaacccagtacctcaaaagaaattattaaataggtcttacaaataat--ttt 22747146  T
Q  101 atatcattacatttcaacaaa 121  Q
    |||||||||||||||||||||    
T  22747145 atatcattacatttcaacaaa 22747125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 122
Target Start/End: Complemental strand, 521412 - 521332
Alignment:
Q  40 aattttctccaacccagcatcacaaaagaaattactaaataggtcccacaagtaatcacatatatcattacatttcaacaaaa 122  Q
    ||||||||| || |||||| | |||||||||||| ||||||| |||||||| ||||   ||||||||||||||||||||||||    
T  521412 aattttctctaatccagcacctcaaaagaaattattaaatagatcccacaaataat--tatatatcattacatttcaacaaaa 521332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 15134848 - 15134965
Alignment:
Q  3 cacataacttattttacaataatacttattaagcactaattttctccaacccagcatcacaaaagaaattactaaataggtcccacaagtaatcacatat 102  Q
    ||||| ||| |||||||  ||||||||| ||| ||| |||||||||||||| || | |  ||||||||||| ||||||| | |||||| ||||    |||    
T  15134848 cacattactcattttactgtaatacttaataaacaccaattttctccaacctagtaccttaaaagaaattattaaatagattccacaaataat--tttat 15134945  T
Q  103 atcattacatttcaacaaaa 122  Q
    ||||||||||||||||||||    
T  15134946 atcattacatttcaacaaaa 15134965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 183 - 274
Target Start/End: Complemental strand, 15489484 - 15489393
Alignment:
Q  183 tgcttccataaccactcttcaccataggcacccaaatattatactccataacaaagatgtctttttaatatggtgctaaatagatgaaacac 274  Q
    |||||||||| ||||| ||| |||||| |||||||||||||||||||| ||    | || || |||||| ||||||||||||| ||||||||    
T  15489484 tgcttccatagccacttttctccatagacacccaaatattatactccacaatgggggtgcctatttaatgtggtgctaaataggtgaaacac 15489393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 88
Target Start/End: Original strand, 20969604 - 20969660
Alignment:
Q  32 taagcactaattttctccaacccagcatcacaaaagaaattactaaataggtcccac 88  Q
    ||||||| |||||||||||||| |||| |  ||||||||||| ||||||||||||||    
T  20969604 taagcaccaattttctccaacctagcacctgaaaagaaattattaaataggtcccac 20969660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 204 - 282
Target Start/End: Complemental strand, 22747059 - 22746982
Alignment:
Q  204 ccataggcacccaaatattatactccataacaaagatgtctttttaatatggtgctaaatagatgaaacacacaccatt 282  Q
    |||||| |||| | ||||||||||||| |||| || || || |||||||| |||||||||||||||| ||| |||||||    
T  22747059 ccatagccaccgatatattatactccacaacagag-tgcctatttaatatagtgctaaatagatgaagcacccaccatt 22746982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 189 - 289
Target Start/End: Original strand, 3611188 - 3611288
Alignment:
Q  189 cataaccactcttcaccataggcacccaaatattatactccataacaaagatgtctttttaatatggtgctaaatagatgaaacacacaccattgtggat 288  Q
    ||||||||||||||  ||||||||| || ||||||||||||  || || | ||| | |||| | ||||||||||||| |||||||  |  ||||||||||    
T  3611188 cataaccactcttcttcataggcacacatatattatactcctcaataatggtgtttatttagtgtggtgctaaataggtgaaacatccttcattgtggat 3611287  T
Q  289 g 289  Q
    |    
T  3611288 g 3611288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 9032505 - 9032624
Alignment:
Q  1 tccacataacttattttacaataatacttattaagcactaattttctccaacccagcatcacaaaagaaattactaaataggtcccacaagtaatcacat 100  Q
    ||||||| |||||||||||  ||||||||| |||||||||||||||||||||||| || |  |||||| |||| |||||||||||||||| ||||    |    
T  9032505 tccacatcacttattttaccgtaatacttaataagcactaattttctccaacccaacaccttaaaagagattattaaataggtcccacaaataat--ttt 9032602  T
Q  101 atatcattacatttcaacaaaa 122  Q
    |||||||||| |||||||||||    
T  9032603 atatcattacgtttcaacaaaa 9032624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 12 - 155
Target Start/End: Complemental strand, 43652756 - 43652615
Alignment:
Q  12 tattttacaataatacttattaagcactaattttctccaacccagcatcacaaaagaaattactaaataggtcccacaagtaatcacatatatcattaca 111  Q
    |||||||||||| |||||| ||| ||| ||||||||||||||||||| | ||| |||||||||||||||| |  || || ||||    ||||||||||||    
T  43652756 tattttacaatagtacttaataaacaccaattttctccaacccagcaccgcaacagaaattactaaatagatatcataaataat--tttatatcattaca 43652659  T
Q  112 tttcaacaaaaaattatgtatttcatcatgatttatcaaatggg 155  Q
    ||||||||| |  |||| ||||||||||| |||||| |||||||    
T  43652658 tttcaacaacattttatttatttcatcataatttattaaatggg 43652615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 5732834 - 5732727
Alignment:
Q  13 attttacaataatacttattaagcactaattttctccaacccagcatcacaaaagaaattactaaataggtcccacaagtaatcacatatatcattacat 112  Q
    |||||||| ||||||||| | | |||||||||||||||| |||||| |  |||| |||||| |||||| ||||||||| ||||    |||||||||||||    
T  5732834 attttacagtaatacttaattaacactaattttctccaatccagcaccttaaaaaaaattattaaataagtcccacaaataat--tctatatcattacat 5732737  T
Q  113 ttcaacaaaa 122  Q
    ||||||||||    
T  5732736 ttcaacaaaa 5732727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 183 - 290
Target Start/End: Original strand, 9032693 - 9032800
Alignment:
Q  183 tgcttccataaccactcttcaccataggcacccaaatattatactccataacaaagatgtctttttaatatggtgctaaatagatgaaacacacaccatt 282  Q
    |||||||||| |||| |||| |||||| ||||||  ||||||||||||||| | || || || |||||| ||||| ||||||| |||| ||| |||||||    
T  9032693 tgcttccatagccacccttctccatagccacccatgtattatactccataatagaggtgcctatttaatgtggtgttaaataggtgaagcacccaccatt 9032792  T
Q  283 gtggatgg 290  Q
     |||||||    
T  9032793 ttggatgg 9032800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 32 - 122
Target Start/End: Complemental strand, 38935348 - 38935260
Alignment:
Q  32 taagcactaattttctccaacccagcatcacaaaagaaattactaaataggtcccacaagtaatcacatatatcattacatttcaacaaaa 122  Q
    ||||||| ||||||||||||||||||| | |||| ||||||| |||||||||| ||||| ||||    |||||| ||||||||||||||||    
T  38935348 taagcaccaattttctccaacccagcacctcaaacgaaattattaaataggtctcacaaataat--tctatatctttacatttcaacaaaa 38935260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 19494986 - 19494919
Alignment:
Q  13 attttacaataatacttattaagcactaattttctccaacccagcatcacaaaagaaattactaaata 80  Q
    ||||||| |||||| ||| |||||||  ||||||||||||||| |||| |||||||||||| ||||||    
T  19494986 attttaccataatatttaataagcaccgattttctccaacccaacatctcaaaagaaattattaaata 19494919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 4 - 155
Target Start/End: Original strand, 7315172 - 7315321
Alignment:
Q  4 acataacttattttacaataatacttattaagcactaattttctccaacccagcatcacaaaagaaattactaaataggtcc-cacaagtaatcacatat 102  Q
    |||| ||| ||||||| | | |||||| ||||||| |||||||||||| ||| || |  ||||||||||| ||||||||||| ||||| ||||    ||     
T  7315172 acatcactcattttaccacattacttaataagcaccaattttctccaatccaacaccttaaaagaaattattaaataggtccacacaaataat--tttac 7315269  T
Q  103 atcattacatttcaacaaaaaattatgtatttcatcatgatttatcaaatggg 155  Q
    |||||||||||||||| |||| |||| ||||| || | ||||||| |||||||    
T  7315270 atcattacatttcaac-aaaatttatttattttattaagatttattaaatggg 7315321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 9548672 - 9548608
Alignment:
Q  22 taatacttattaagcactaattttctccaacccagcatcacaaaagaaattactaaataggtccca 87  Q
    ||||||| | ||| |||||||||||||||||||| || | ||||| |||||| |||||||||||||    
T  9548672 taatactcaataaacactaattttctccaacccaaca-ctcaaaaaaaattattaaataggtccca 9548608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 155
Target Start/End: Complemental strand, 25323033 - 25322944
Alignment:
Q  63 aaaagaaattactaaataggtcccacaagtaatcacatatatcattacatttcaacaaaaaattatgtatttcatcatgatttatcaaatggg 155  Q
    ||||||||||| |||||| ||||||||| ||||    ||||||||||||||||||| |||| |||| ||||| || | ||||||| |||||||    
T  25323033 aaaagaaattattaaatatgtcccacaaataattt--tatatcattacatttcaac-aaaatttatttattttattaagatttattaaatggg 25322944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 183 - 296
Target Start/End: Original strand, 71677 - 71791
Alignment:
Q  183 tgcttccataaccactcttcac-cataggcacccaaatattatactccataacaaagatgtctttttaatatggtgctaaatagatgaaacacacaccat 281  Q
    |||||||||||||||| ||  | |||||||||||||||||||||||||||||    | || || |||| ||||||||||||||| ||||||||  | |||    
T  71677 tgcttccataaccacttttttctcataggcacccaaatattatactccataatgtgggtgcctatttagtatggtgctaaataggtgaaacaccaatcat 71776  T
Q  282 tgtggatggcctaag 296  Q
    |||||||||||||||    
T  71777 tgtggatggcctaag 71791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 71512 - 71666
Alignment:
Q  1 tccacataacttattttacaataatacttattaagcactaattttctccaacccagcatcacaaaagaaattactaaataggtcccacaagtaatcacat 100  Q
    |||||||||||||||||||||||||||||| |||||||   |||||||||| |||| | |  |||  |||||| ||||||||||  |||| ||||    |    
T  71512 tccacataacttattttacaataatacttaataagcaccgtttttctccaatccagaaccgaaaagaaaattaataaataggtcgtacaaataat--ttt 71609  T
Q  101 atatcattacatttcaacaaaaaattatgtatttcatcatgatttatcaaatggggt 157  Q
    ||||||||  | |||||| |||  |||| |||||||| ||||||||| |||||||||    
T  71610 atatcattttaattcaactaaattttatttatttcattatgatttattaaatggggt 71666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 6148242 - 6148361
Alignment:
Q  1 tccacataacttattttacaataatacttattaagcactaattttctccaacccagcatcacaaaagaaattactaaataggtcccacaagtaatcacat 100  Q
    ||||||| |||||||||||  ||||| ||| ||||||  |||||||| |||||||||| |  ||||||||||| |||||||||||||||| ||||    |    
T  6148242 tccacatcacttattttacggtaatatttaataagcatcaattttctacaacccagcaccttaaaagaaattattaaataggtcccacaaataat--tct 6148339  T
Q  101 atatcattacatttcaacaaaa 122  Q
    ||||||||| ||||||||||||    
T  6148340 atatcattaaatttcaacaaaa 6148361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 4 - 122
Target Start/End: Original strand, 1597946 - 1598062
Alignment:
Q  4 acataacttattttacaataatacttattaagcactaattttctccaacccagcatcacaaaagaaattactaaataggtcccacaagtaatcacatata 103  Q
    |||| ||| |||||||  ||||| ||| ||||||| ||| |||||||||| | || | |||||||||||| |||||||||||||||| ||||    ||||    
T  1597946 acatcactaattttacggtaatatttaataagcaccaatattctccaaccgaacacctcaaaagaaattattaaataggtcccacaaataat--tttata 1598043  T
Q  104 tcattacatttcaacaaaa 122  Q
    |||||||||||||||||||    
T  1598044 tcattacatttcaacaaaa 1598062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 20765886 - 20765767
Alignment:
Q  1 tccacataacttattttacaataatacttattaagcactaattttctccaacccagcatcacaaaagaaattactaaataggtcccacaagtaatcacat 100  Q
    ||||||| ||| |||||||  ||||||||| ||||||  ||||||||||||||||||| |  |||||||| || |||||||  ||||||| ||||    |    
T  20765886 tccacatcactcattttaccgtaatacttaataagcatcaattttctccaacccagcaccttaaaagaaaatattaaatagtgcccacaaataat--ttt 20765789  T
Q  101 atatcattacatttcaacaaaa 122  Q
    ||||||||||||||||||||||    
T  20765788 atatcattacatttcaacaaaa 20765767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 41407483 - 41407364
Alignment:
Q  1 tccacataacttattttacaataatacttattaagcactaattttctccaacccagcatcacaaaagaaattactaaataggtcccacaagtaatcacat 100  Q
    ||||||| |||||||||||  ||||||||| ||| |||| ||||| | |||| ||||||| |||||||||||| ||||||| ||| |||| |||     |    
T  41407483 tccacatcacttattttacggtaatacttaataaacactcattttatgcaactcagcatctcaaaagaaattattaaatagatcctacaaataa--cttt 41407386  T
Q  101 atatcattacatttcaacaaaa 122  Q
    ||||||||||| ||||||||||    
T  41407385 atatcattacacttcaacaaaa 41407364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 40 - 125
Target Start/End: Complemental strand, 42845408 - 42845325
Alignment:
Q  40 aattttctccaacccagcatcacaaaagaaattactaaataggtcccacaagtaatcacatatatcattacatttcaacaaaaaat 125  Q
    |||||||||  | |||||||| ||||| |||||| |||||||||||||||| ||||    ||||||||||||||||||||||||||    
T  42845408 aattttctcacatccagcatctcaaaataaattattaaataggtcccacaaataat--tctatatcattacatttcaacaaaaaat 42845325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 37127480 - 37127592
Alignment:
Q  13 attttacaataatacttattaagcac-----taattttctccaacccagcatcacaaaagaaattactaaataggtcccacaagtaatcacatatatcat 107  Q
    ||||||| |||||||||| |||||||     ||||||||||||||| |||| |  |||| |||||| ||||||| |||||||| ||||    ||||||||    
T  37127480 attttactataatacttaataagcaccaatttaattttctccaaccgagcaccttaaaataaattattaaatagatcccacaaataat--tttatatcat 37127577  T
Q  108 tacatttcaacaaaa 122  Q
    |||||||||||||||    
T  37127578 tacatttcaacaaaa 37127592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 40 - 122
Target Start/End: Complemental strand, 43429567 - 43429487
Alignment:
Q  40 aattttctccaacccagcatcacaaaagaaattactaaataggtcccacaagtaatcacatatatcattacatttcaacaaaa 122  Q
    |||||||||||||||| || | |||||||||||| |||||| || |||||| ||||    |||||||||||||||||||||||    
T  43429567 aattttctccaacccaacacctcaaaagaaattattaaataagttccacaaataat--tctatatcattacatttcaacaaaa 43429487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 40216640 - 40216521
Alignment:
Q  1 tccacataacttattttacaataatacttattaagcactaattttctccaacccagcatcacaaaagaaattactaaataggtcccacaagtaatcacat 100  Q
    ||||||| ||| ||||||| |||||||||| ||| ||| || ||  ||||||||| || |  ||||||||||| |||||||| ||||| | ||||    |    
T  40216640 tccacatcactcattttactataatacttaataaacaccaaattcttccaacccaacaccttaaaagaaattattaaataggccccaccaataat--ttt 40216543  T
Q  101 atatcattacatttcaacaaaa 122  Q
    ||||||||||||||||||||||    
T  40216542 atatcattacatttcaacaaaa 40216521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 199 - 296
Target Start/End: Original strand, 6148438 - 6148534
Alignment:
Q  199 cttcaccataggcacccaaatattatactccataacaaagatgtctttttaatatggtgctaaatagatgaaacacacaccattgtggatggcctaag 296  Q
    |||| |||||| |||||| |||||||||| || ||   ||||| ||| ||||||||||| ||||||| |||| ||| ||||||||||||||| |||||    
T  6148438 cttctccatagacacccatatattatacttcacaatggagatg-cttattaatatggtgttaaataggtgaagcacccaccattgtggatggtctaag 6148534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 7186473 - 7186385
Alignment:
Q  1 tccacataacttattttacaataatacttattaagcactaattttctccaacccagcatcacaaaagaaattactaaataggtcccaca 89  Q
    ||||||| ||| |||||||  ||||||||| ||||||| | |||||||||||||| || | ||||| |||||| ||||| |||| ||||    
T  7186473 tccacatcactcattttacggtaatacttaataagcaccacttttctccaacccaacacctcaaaataaattattaaattggtctcaca 7186385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 204 - 295
Target Start/End: Original strand, 3346832 - 3346923
Alignment:
Q  204 ccataggcacccaaatattatactccataacaaagatgtctttttaatatggtgctaaatagatgaaacacacaccattgtggatggcctaa 295  Q
    ||||| ||||||| ||||||||||| ||||  ||||||  | |||||| |||| ||||||| ||||| |||  |||||||||||||| ||||    
T  3346832 ccataagcacccatatattatactctataatgaagatgcatgtttaatgtggtactaaataaatgaagcacttaccattgtggatggtctaa 3346923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 290
Target Start/End: Complemental strand, 41407304 - 41407197
Alignment:
Q  183 tgcttccataaccactcttcaccataggcacccaaatattatactccataacaaagatgtctttttaatatggtgctaaatagatgaaacacacaccatt 282  Q
    |||||||||| ||||  ||| | |||| |||||| ||||| ||||||| ||  | | || || |||||||||||| |||||||||||| ||| || ||||    
T  41407304 tgcttccatagccaccattctctatagccacccatatattttactccacaatgatggtgcctatttaatatggtgttaaatagatgaagcacccatcatt 41407205  T
Q  283 gtggatgg 290  Q
    ||||||||    
T  41407204 gtggatgg 41407197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 295
Target Start/End: Original strand, 25141035 - 25141084
Alignment:
Q  246 tttaatatggtgctaaatagatgaaacacacaccattgtggatggcctaa 295  Q
    |||||||||||| |||||||||||| ||  ||||||||||||||| ||||    
T  25141035 tttaatatggtgttaaatagatgaagcatccaccattgtggatggtctaa 25141084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 2 - 122
Target Start/End: Original strand, 60841 - 60959
Alignment:
Q  2 ccacataacttattttacaataatacttattaagcactaattttctccaacccagcatcacaaaagaaattactaaataggtcccacaagtaatcacata 101  Q
    |||||| ||| |||||||  ||||||||| ||||||  ||||||||||||||||||| |  ||||| ||||| |||||||| ||||||| ||||    ||    
T  60841 ccacatcactcattttaccgtaatacttaataagcatcaattttctccaacccagcaccttaaaaggaattattaaatagggcccacaaataat--ttta 60938  T
Q  102 tatcattacatttcaacaaaa 122  Q
    |||||||||||||||||||||    
T  60939 tatcattacatttcaacaaaa 60959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 246 - 286
Target Start/End: Original strand, 61064 - 61104
Alignment:
Q  246 tttaatatggtgctaaatagatgaaacacacaccattgtgg 286  Q
    |||||||||||||||||||| |||||||  |||||||||||    
T  61064 tttaatatggtgctaaataggtgaaacatccaccattgtgg 61104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1940 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold1940
Description:

Target: scaffold1940; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 120
Target Start/End: Complemental strand, 800 - 704
Alignment:
Q  22 taatacttattaagcactaattttctccaacccagcatcacaaaagaaattactaaataggtcccacaagtaatcacatatatcattacatttcaacaa 120  Q
    ||||||||| ||||||| | |||||||||||| |||| | ||||| |||||| |||||||||||||||| ||||    ||||||||||||||| |||||    
T  800 taatacttaataagcaccatttttctccaacctagcacctcaaaataaattattaaataggtcccacaaataat--tttatatcattacattttaacaa 704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0355
Description:

Target: scaffold0355; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 2589 - 2740
Alignment:
Q  1 tccacataacttattttacaataatacttattaagcactaattttctccaacccagcatcacaaaagaaattactaaataggtcccacaagtaatcacat 100  Q
    ||||||| ||| |||||||  ||||||||| ||||||  |||||||||||| |||||| |  ||||||||||| ||||||||  ||| || ||||    |    
T  2589 tccacatcactcattttaccgtaatacttaataagcatcaattttctccaatccagcaccttaaaagaaattattaaatagggtccataactaat--ttt 2686  T
Q  101 atatcattacatttcaacaaaaaattatgtatttcatcatgatttatcaaatggg 155  Q
    |||||||||||||||||| |||| |||| ||||| || | ||||||| |||||||    
T  2687 atatcattacatttcaac-aaaatttatttattttattaagatttattaaatggg 2740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 246 - 286
Target Start/End: Original strand, 2812 - 2852
Alignment:
Q  246 tttaatatggtgctaaatagatgaaacacacaccattgtgg 286  Q
    |||||||||||||||||||| |||||||| |||||||||||    
T  2812 tttaatatggtgctaaataggtgaaacacccaccattgtgg 2852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 22973 - 22910
Alignment:
Q  25 tacttattaagcactaattttctccaacccagcatcacaaaagaaattactaaataggtcccac 88  Q
    |||||| ||||||| |||||||||||||  |||| |  ||||||||||| ||||||||||||||    
T  22973 tacttaataagcaccaattttctccaacatagcacctgaaaagaaattattaaataggtcccac 22910  T

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Target: scaffold0006 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 178190 - 178341
Alignment:
Q  1 tccacataacttattttacaataatacttattaagcactaattttctccaacccagcatcacaaaagaaattactaaataggtcccacaagtaatcacat 100  Q
    ||||||| ||| |||||||  ||||||||| ||||||  |||||||||||| |||| | |  ||||||||||| |||||||| | ||||| ||||    |    
T  178190 tccacatcactcattttaccgtaatacttaataagcatcaattttctccaatccagtaccttaaaagaaattattaaatagggcacacaactaat--ttt 178287  T
Q  101 atatcattacatttcaacaaaaaattatgtatttcatcatgatttatcaaatggg 155  Q
     ||||||||||||||||  |||| |||| ||||| || | ||||||| |||||||    
T  178288 gtatcattacatttcaa-taaaatttatttattttattaagatttattaaatggg 178341  T

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Target: scaffold0001 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 290
Target Start/End: Complemental strand, 428392 - 428286
Alignment:
Q  183 tgcttccataaccactcttcaccataggcacccaaatattatactccataacaaagatgtctttttaatatggtgctaaatagatgaaacacacaccatt 282  Q
    |||||||||| |||| |||| |||||| ||||||  |||||||||||| ||    | || || |||||| ||||||||||||| |||| ||| |||||||    
T  428392 tgcttccatagccacccttctccatagccacccatgtattatactccacaatgggg-tgcctatttaatctggtgctaaataggtgaagcacccaccatt 428294  T
Q  283 gtggatgg 290  Q
    ||||||||    
T  428293 gtggatgg 428286  T

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