View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4437_high_3 (Length: 445)
Name: NF4437_high_3
Description: NF4437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4437_high_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 376; Significance: 0; HSPs: 12)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 43 - 430
Target Start/End: Original strand, 6362504 - 6362891
Alignment:
| Q |
43 |
gatagttaggaaagttacttagagtttgtttgattggtagttactttgttgattctctactagctctatacatggctacaaagtcaaacatttaccattg |
142 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6362504 |
gatagttaggaaagttacttagagtttgtttgattggtagttactttgttgattctctactagctctatacatggctacaaagtcaaacatttaccattg |
6362603 |
T |
|
| Q |
143 |
aactgaaaccgtgtggtattatatttgagatcaatatctttttaaaaaatggactgagtcaagatgtaatgttttgcaaggttaccttttgattagatca |
242 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
6362604 |
aactgaaaccgtgtggtattatacttgagatcaatatctttttaaaaaacggactgagtcaagatgtaatgttttgtaaggttaccttttgattagatca |
6362703 |
T |
|
| Q |
243 |
ttaggtaggccttgctcagtgaaaacccaatccttgtaaacgacagaagacatttccaaagcatactttccccacaagaaagttgactcgataataccct |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6362704 |
ttaggtaggccttgctcagtgaaaacccaatccttgtaaacgacagaagacatttccaaagcatactttccccacaagaaagttgactcgataataccct |
6362803 |
T |
|
| Q |
343 |
cggcattgaccaacacatttcgtgctagtgcatttatgttcatcgtgtcacgataatgtggaagcagaagtttatgaatagggtgaac |
430 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6362804 |
cggcattgaccaacacatttcgtgctagtgcatttatgttcatcgtgtcacgataatgtggaagcagaagtttatgaatagggtgaac |
6362891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 220 - 430
Target Start/End: Original strand, 6351748 - 6351958
Alignment:
| Q |
220 |
aaggttaccttttgattagatcattaggtaggccttgctcagtgaaaacccaatccttgtaaacgacagaagacatttccaaagcatactttccccacaa |
319 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||| ||||| ||||||||||||||| |||| |||||||||||||||||| ||||||||||| |
|
|
| T |
6351748 |
aaggttaccttttgattagatcgttaggtagtccttgctcaatgaaattccaatccttgtaaacaacagcagacatttccaaagcataatttccccacaa |
6351847 |
T |
|
| Q |
320 |
gaaagttgactcgataataccctcggcattgaccaacacatttcgtgctagtgcatttatgttcatcgtgtcacgataatgtggaagcagaagtttatga |
419 |
Q |
| |
|
||| ||||| || ||||||||||| ||||||||||| ||||||||||| ||||||||||||||||| |||||||| || || ||||| | |||||||||| |
|
|
| T |
6351848 |
gaaggttgattctataataccctctgcattgaccaagacatttcgtgcaagtgcatttatgttcattgtgtcacggtagtgaggaagtaaaagtttatga |
6351947 |
T |
|
| Q |
420 |
atagggtgaac |
430 |
Q |
| |
|
||||||||||| |
|
|
| T |
6351948 |
atagggtgaac |
6351958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 170 - 430
Target Start/End: Original strand, 7458520 - 7458781
Alignment:
| Q |
170 |
agatcaatatctttttaaaa-aatggactgagtcaagatgtaatgttttgcaaggttaccttttgattagatcattaggtaggccttgctcagtgaaaac |
268 |
Q |
| |
|
|||||||||||||||||||| ||||||| || ||||||||| |||||| |||||||||||||||||||||||||||| || |||||||| |||||| |
|
|
| T |
7458520 |
agatcaatatctttttaaaaaaatggaccgacccaagatgtacggttttgtaaggttaccttttgattagatcattaggaagtccttgctcggtgaaatt |
7458619 |
T |
|
| Q |
269 |
ccaatccttgtaaacgacagaagacatttccaaagcatactttccccacaagaaagttgactcgataataccctcggcattgaccaacacatttcgtgct |
368 |
Q |
| |
|
||||||||||||||| |||| ||||||||| | |||||| | |||||||||||||||| | || |||| |||| | ||||||||||| | | ||||||| |
|
|
| T |
7458620 |
ccaatccttgtaaacaacagcagacatttcaacagcataatctccccacaagaaagttaattccataacaccccctgcattgaccaagatagttcgtgcg |
7458719 |
T |
|
| Q |
369 |
agtgcatttatgttcatcgtgtcacgataatgtggaagcagaagtttatgaatagggtgaac |
430 |
Q |
| |
|
|| | |||||||||||| |||||||| || |||||||| | ||||||||||||||||||||| |
|
|
| T |
7458720 |
agggaatttatgttcattgtgtcacggtagtgtggaagtaaaagtttatgaatagggtgaac |
7458781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 170 - 430
Target Start/End: Original strand, 7470922 - 7471183
Alignment:
| Q |
170 |
agatcaatatctttttaaaa-aatggactgagtcaagatgtaatgttttgcaaggttaccttttgattagatcattaggtaggccttgctcagtgaaaac |
268 |
Q |
| |
|
|||||||||||||||||||| ||||||| || ||||||||| |||||| |||||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
7470922 |
agatcaatatctttttaaaaaaatggaccgacccaagatgtacggttttgtaaggttaccttttgattagatcattaggaagtccttgctcagtgaaatt |
7471021 |
T |
|
| Q |
269 |
ccaatccttgtaaacgacagaagacatttccaaagcatactttccccacaagaaagttgactcgataataccctcggcattgaccaacacatttcgtgct |
368 |
Q |
| |
|
||||||||||||||| |||| ||||||||| | |||||| | |||||||||||||||| | || |||| |||| | ||||||||||| | | ||||||| |
|
|
| T |
7471022 |
ccaatccttgtaaacaacagcagacatttcgacagcataatctccccacaagaaagttaattccataacaccccctgcattgaccaagatagttcgtgcg |
7471121 |
T |
|
| Q |
369 |
agtgcatttatgttcatcgtgtcacgataatgtggaagcagaagtttatgaatagggtgaac |
430 |
Q |
| |
|
|| | ||||| |||||| ||||||| || |||||||| | ||||||||||||| ||||||| |
|
|
| T |
7471122 |
agggaatttaagttcattgtgtcacagtagtgtggaagtaaaagtttatgaatatggtgaac |
7471183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 226 - 430
Target Start/End: Original strand, 6423598 - 6423802
Alignment:
| Q |
226 |
accttttgattagatcattaggtaggccttgctcagtgaaaacccaatccttgtaaacgacagaagacatttccaaagcatactttccccacaagaaagt |
325 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||||||||||||||| | || | |||| |||||||||||||||||| |||||||||||| || |
|
|
| T |
6423598 |
accttttgagtagatcattaggtagcccttgctcagtgaaaacccaatccctatatgcaacagcagacatttccaaagcatatcctccccacaagaatgt |
6423697 |
T |
|
| Q |
326 |
tgactcgataataccctcggcattgaccaacacatttcgtgctagtgcatttatgttcatcgtgtcacgataatgtggaagcagaagtttatgaataggg |
425 |
Q |
| |
|
||| || ||||||||||| |||||||| | ||||| ||||| |||| |||||||||||| |||||||| || || ||||| | |||||| || | |||| |
|
|
| T |
6423698 |
tgattctataataccctcagcattgacaaggacattccgtgcaagtgaatttatgttcattgtgtcacggtagtgaggaagtaaaagtttgtggacaggg |
6423797 |
T |
|
| Q |
426 |
tgaac |
430 |
Q |
| |
|
||||| |
|
|
| T |
6423798 |
tgaac |
6423802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 220 - 430
Target Start/End: Original strand, 6320882 - 6321092
Alignment:
| Q |
220 |
aaggttaccttttgattagatcattaggtaggccttgctcagtgaaaacccaatccttgtaaacgacagaagacatttccaaagcatactttccccacaa |
319 |
Q |
| |
|
||||||||||||| | ||||||||||||||| ||||| || | ||||||||||||||| || | |||||||||| ||| | || || ||||| | || |
|
|
| T |
6320882 |
aaggttaccttttaagtagatcattaggtagtccttgatctgggaaaacccaatccttatataatacagaagacagttctatagaatgacttcccaataa |
6320981 |
T |
|
| Q |
320 |
gaaagttgactcgataataccctcggcattgaccaacacatttcgtgctagtgcatttatgttcatcgtgtcacgataatgtggaagcagaagtttatga |
419 |
Q |
| |
|
||| ||||| || ||||||||||| ||||| ||||| ||| | | ||| |||||||| |||||||| ||||||||||||||||||||||||||||| ||| |
|
|
| T |
6320982 |
gaatgttgattctataataccctctgcatttaccaagacactccttgcaagtgcattaatgttcattgtgtcacgataatgtggaagcagaagtttgtga |
6321081 |
T |
|
| Q |
420 |
atagggtgaac |
430 |
Q |
| |
|
||||||||||| |
|
|
| T |
6321082 |
atagggtgaac |
6321092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 162 - 429
Target Start/End: Original strand, 6369471 - 6369738
Alignment:
| Q |
162 |
tatatttgagatcaatatctttttaaaaaatggactgagtcaagatgtaatgttttgcaaggttaccttttgattagatcattaggtaggccttgctcag |
261 |
Q |
| |
|
||||||| |||| ||||||||| ||| ||||||||||| || |||| |||||||||| | |||||| || |||||||| ||||||| |||| |||| |
|
|
| T |
6369471 |
tatattttagattaatatctttctaataaatggactgaaccatgatgcaatgttttgctaaattacctattttttagatcagtaggtagtccttcttcag |
6369570 |
T |
|
| Q |
262 |
tgaaaacccaatccttgtaaacgacagaagacatttccaaagcatactttccccacaagaaagttgactcgataataccctcggcattgaccaacacatt |
361 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||| | || ||| | |||| || || ||||| | ||||||| | ||||||| ||| | ||| |
|
|
| T |
6369571 |
cgaaaacccaatccttgtaaacaacagctgacatttccatacagtatttttcaaacaaaaatgtcgactctacaataccccctgcattgatcaagatatt |
6369670 |
T |
|
| Q |
362 |
tcgtgctagtgcatttatgttcatcgtgtcacgataatgtggaagcagaagtttatgaatagggtgaa |
429 |
Q |
| |
|
||||| | ||||||||||| |||||||| ||||||| ||||||| | |||||||||||||||||||| |
|
|
| T |
6369671 |
tcgtgatcgtgcatttatggtcatcgtgccacgatagtgtggaactaaaagtttatgaatagggtgaa |
6369738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 203 - 430
Target Start/End: Original strand, 6409666 - 6409893
Alignment:
| Q |
203 |
aagatgtaatgttttgcaaggttaccttttgattagatcattaggtaggccttgctcagtgaaaacccaatccttgtaaacgacagaagacatttccaaa |
302 |
Q |
| |
|
||||| |||| ||||| ||| ||||||||||||||||||||||||||| |||| || | ||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
6409666 |
aagatttaatattttgtaagcttaccttttgattagatcattaggtagtgcttgatccgggaaaacccaatccttgtaaacatcagaagacaattccatt |
6409765 |
T |
|
| Q |
303 |
gcatactttccccacaagaaagttgactcgataataccctcggcattgaccaacacatttcgtgctagtgcatttatgttcatcgtgtcacgataatgtg |
402 |
Q |
| |
|
| ||| |||| ||||| | |||||||| ||||||||| | || |||| ||| |||| ||| || |||||||||||||| |||| |||||| |||| |
|
|
| T |
6409766 |
gaataacttccaaacaagtatgttgactctataataccccctgctttgatcaagacatctcgcgcattggcatttatgttcattgtgttacgatagtgtg |
6409865 |
T |
|
| Q |
403 |
gaagcagaagtttatgaatagggtgaac |
430 |
Q |
| |
|
|||| | |||||||||||||||||||| |
|
|
| T |
6409866 |
gaagtaatagtttatgaatagggtgaac |
6409893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 209 - 430
Target Start/End: Original strand, 6331378 - 6331599
Alignment:
| Q |
209 |
taatgttttgcaaggttaccttttgattagatcattaggtaggccttgctcagtgaaaacccaatccttgtaaacgacagaagacatttccaaagcatac |
308 |
Q |
| |
|
|||| ||||| ||||||||||||| | || ||||||||| || || ||||| |||||||||||||||| || | | || ||||| ||| |||| ||| |
|
|
| T |
6331378 |
taatattttgtaaggttaccttttcagtaaatcattaggaagaccgtgctctatgaaaacccaatccttatataatagagcagacaattctaaagaataa |
6331477 |
T |
|
| Q |
309 |
tttccccacaagaaagttgactcgataataccctcggcattgaccaacacatttcgtgctagtgcatttatgttcatcgtgtcacgataatgtggaagca |
408 |
Q |
| |
|
|||| |||||| || || || ||||||||||| ||||| ||||| ||||| | ||| |||||||| |||||||| |||||||||||||||||||| | |
|
|
| T |
6331478 |
cgtcccatcaagaatgtcgattctataataccctctgcattaaccaagacattccttgcaagtgcattaatgttcattgtgtcacgataatgtggaagta |
6331577 |
T |
|
| Q |
409 |
gaagtttatgaatagggtgaac |
430 |
Q |
| |
|
||||||| |||||||||||||| |
|
|
| T |
6331578 |
gaagtttgtgaatagggtgaac |
6331599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 160 - 430
Target Start/End: Original strand, 6390419 - 6390688
Alignment:
| Q |
160 |
attatatttgagatcaatatctttttaaaaaatggactgagtcaa-gatgtaatgttttgcaaggttaccttttgattagatcattaggtaggccttgct |
258 |
Q |
| |
|
||||| |||||||||||| ||||| |||||| |||||| || | | |||||||| |||| ||||| ||||||||||||||||||||||||| ||||| | |
|
|
| T |
6390419 |
attatttttgagatcaatgtctttctaaaaa-tggact-agacgacgatgtaataatttgtaaggtcaccttttgattagatcattaggtagtccttgat |
6390516 |
T |
|
| Q |
259 |
cagtgaaaacccaatccttgtaaacgacagaagacatttccaaagcatactttccccacaagaaagttgactcgataataccctcggcattgaccaacac |
358 |
Q |
| |
|
| ||||||||||||||||||||| ||||||||| ||||| | ||| |||| ||||| | |||||||| ||||||||| | || |||| ||| |
|
|
| T |
6390517 |
cttggaaaacccaatccttgtaaacttcagaagacaattccattgaataacttccaaacaagtatgttgactctataataccccctgctttgatcaaggt |
6390616 |
T |
|
| Q |
359 |
atttcgtgctagtgcatttatgttcatcgtgtcacgataatgtggaagcagaagtttatgaatagggtgaac |
430 |
Q |
| |
|
|| ||| || |||||||||||||| |||| |||||| |||||||| | ||||||||||||||||||||| |
|
|
| T |
6390617 |
atctcgcgcattggcatttatgttcattgtgttacgatagtgtggaagtaaaagtttatgaatagggtgaac |
6390688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 209 - 430
Target Start/End: Original strand, 6288249 - 6288470
Alignment:
| Q |
209 |
taatgttttgcaaggttaccttttgattagatcattaggtaggccttgctcagtgaaaacccaatccttgtaaacgacagaagacatttccaaagcatac |
308 |
Q |
| |
|
|||||||||| ||||||||||||| | |||||||||||| | ||||| || ||||||||||| || || || | || | ||||| ||| |||| ||| |
|
|
| T |
6288249 |
taatgttttgtaaggttaccttttaagtagatcattaggcaaaccttgatcggtgaaaacccagtctttatatattaccgcagacaattctaaagaataa |
6288348 |
T |
|
| Q |
309 |
tttccccacaagaaagttgactcgataataccctcggcattgaccaacacatttcgtgctagtgcatttatgttcatcgtgtcacgataatgtggaagca |
408 |
Q |
| |
|
||||| |||||| || ||| |||| ||||| ||||||||||| ||||| | ||| |||||||| |||||||| ||||||||||| || ||||| | |
|
|
| T |
6288349 |
cttcccatcaagaacgtcttctcaataacaccctttgcattgaccaaaacattccttgcaagtgcattaatgttcattgtgtcacgatagtgcggaagta |
6288448 |
T |
|
| Q |
409 |
gaagtttatgaatagggtgaac |
430 |
Q |
| |
|
||| ||||||||||| ||||| |
|
|
| T |
6288449 |
aaagcttatgaataggatgaac |
6288470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 209 - 430
Target Start/End: Original strand, 6273999 - 6274220
Alignment:
| Q |
209 |
taatgttttgcaaggttaccttttgattagatcattaggtaggccttgctcagtgaaaacccaatccttgtaaacgacagaagacatttccaaagcatac |
308 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||| | |||||||| | ||| ||||||||| || | |||| ||||| || | || ||| |
|
|
| T |
6273999 |
taatgttttttaaggttaccttttgagtagatcattaggcaaaccttgctctttaaaattccaatccttatataatacagcagacaactctagagaataa |
6274098 |
T |
|
| Q |
309 |
tttccccacaagaaagttgactcgataataccctcggcattgaccaacacatttcgtgctagtgcatttatgttcatcgtgtcacgataatgtggaagca |
408 |
Q |
| |
|
||||| |||||| || ||| |||| |||||| ||||||||||| ||||| | ||| |||||||| |||||||| ||||||||||| || ||||| | |
|
|
| T |
6274099 |
cttcccatcaagaacgtcttctcaataacaccctctgcattgaccaaaacattccttgcaagtgcattaatgttcattgtgtcacgatagtgcggaagta |
6274198 |
T |
|
| Q |
409 |
gaagtttatgaatagggtgaac |
430 |
Q |
| |
|
||| ||||||||||| ||||| |
|
|
| T |
6274199 |
aaagcttatgaataggatgaac |
6274220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 311
Target Start/End: Complemental strand, 42689272 - 42689185
Alignment:
| Q |
224 |
ttaccttttgattagatcattaggtaggccttgctcagtgaaaacccaatccttgtaaacgacagaagacatttccaaagcatacttt |
311 |
Q |
| |
|
|||||| ||||| |||||| || ||| |||| |||| ||||||||||| ||||||||| | ||||||||||||| |||||||||| |
|
|
| T |
42689272 |
ttacctcttgataagatcagctggaagggcttgatcagggaaaacccaattcttgtaaaccgctgaagacatttccacagcatacttt |
42689185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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