View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4437_high_5 (Length: 395)

Name: NF4437_high_5
Description: NF4437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4437_high_5
NF4437_high_5
[»] chr7 (3 HSPs)
chr7 (218-333)||(46633396-46633511)
chr7 (1-77)||(46633995-46634072)
chr7 (1-77)||(32502721-32502796)
[»] chr3 (1 HSPs)
chr3 (1-77)||(18375400-18375475)
[»] chr8 (1 HSPs)
chr8 (107-140)||(33763822-33763855)
[»] scaffold0651 (1 HSPs)
scaffold0651 (106-138)||(999-1031)
[»] chr4 (1 HSPs)
chr4 (106-138)||(31331085-31331117)
[»] chr1 (1 HSPs)
chr1 (106-138)||(33175270-33175302)


Alignment Details
Target: chr7 (Bit Score: 108; Significance: 4e-54; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 218 - 333
Target Start/End: Complemental strand, 46633511 - 46633396
Alignment:
Q  218 tgatcacaaacatgataatggatgagacaaaccagtagaactatcgcaaaatgatatgttttcttcatcgggttcaaccataaaagtcttgatagattta 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  46633511 tgatcacaaacatgataatggatgagacaaaccagtagaactatcgcaaaatgatatgttttcttcatcgggttcaaacataaaagtcttgatagattta 46633412  T
Q  318 cagtatctcaatttcc 333  Q
     |||||||||||||||    
T  46633411 tagtatctcaatttcc 46633396  T

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Target: chr7; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 46634072 - 46633995
Alignment:
Q  1 aagaaattgaaaaaa-ctaccattcattaattaaagtagaacaacaataattcataataaataacattaaattgaaag 77  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  46634072 aagaaattgaaaaaaactaccattcattaattaaagtagaacaacaataattcataataaataacatcaaattgaaag 46633995  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 32502796 - 32502721
Alignment:
Q  1 aagaaattgaaaaaactaccattcattaattaaagtagaacaacaataattcataataaataacattaaattgaaag 77  Q
    |||||||||||||||||| |||||||||| | || || |||||| ||||||||||  | ||||||| |||| |||||    
T  32502796 aagaaattgaaaaaactagcattcattaactcaaataaaacaac-ataattcatatcagataacatgaaatagaaag 32502721  T

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Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 18375400 - 18375475
Alignment:
Q  1 aagaaattgaaaaaactaccattcattaattaaagtagaacaacaataattcataataaataacattaaattgaaag 77  Q
    ||||||||||||| ||||||||||||||||| ||||| |||||| ||||||||||||| ||||||| ||||||||||    
T  18375400 aagaaattgaaaatactaccattcattaattcaagtacaacaac-ataattcataatagataacatcaaattgaaag 18375475  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 140
Target Start/End: Complemental strand, 33763855 - 33763822
Alignment:
Q  107 catatattatgcattgtccttatcaattaagcga 140  Q
    |||||||||||||||||||||||||||| |||||    
T  33763855 catatattatgcattgtccttatcaattgagcga 33763822  T

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Target: scaffold0651 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0651
Description:

Target: scaffold0651; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 138
Target Start/End: Complemental strand, 1031 - 999
Alignment:
Q  106 acatatattatgcattgtccttatcaattaagc 138  Q
    ||||||||||||||| |||||||||||||||||    
T  1031 acatatattatgcatcgtccttatcaattaagc 999  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 138
Target Start/End: Complemental strand, 31331117 - 31331085
Alignment:
Q  106 acatatattatgcattgtccttatcaattaagc 138  Q
    ||||||||||||||| |||||||||||||||||    
T  31331117 acatatattatgcatcgtccttatcaattaagc 31331085  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 138
Target Start/End: Complemental strand, 33175302 - 33175270
Alignment:
Q  106 acatatattatgcattgtccttatcaattaagc 138  Q
    |||||||||||||||||||| ||||||||||||    
T  33175302 acatatattatgcattgtccatatcaattaagc 33175270  T

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