View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4437_high_6 (Length: 387)
Name: NF4437_high_6
Description: NF4437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4437_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 43602255 - 43601883
Alignment:
| Q |
1 |
ttgaatggaacccatgcatcagtgtacgacactaacacatgtcagacattagacacatattcaatgtgaaatctccgtacatatgtatgcgcaattctct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
43602255 |
ttgaatggaacccatgcatcagtgtacgacactaacacatgtcagatattagacacatattcaatgtgaaatctcggtacatatgtatgcgcaattctct |
43602156 |
T |
|
| Q |
101 |
agctaaaggtaaaggcaatcaa-taacttcagcagaagaagactaatttctctttaattaatcagtaagaatcaaagcatccaaagccaatacatgtgtc |
199 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
43602155 |
agctaaaggtaaaggcaatcaactaacttcagcagaagaagactaatttctctttaattaatcagtaagaatcaaagcatccaaagccaatacatgt-tc |
43602057 |
T |
|
| Q |
200 |
accaaatttttctaccctggttaagttaagtggataacaattctataaattaatagctctggcacgtgatgcacgtgacagactgcaaattattgtcaag |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43602056 |
accaaatttttctaccctggttaagttaagtggataacgattctataaattaatagctctggcacgtgatgcacgtgacagactgcaaattattgtcaag |
43601957 |
T |
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| Q |
300 |
tggaactgttttcagagacaactttatcatgtgcggggctgtgttttggtgcagaaataattttcataatttga |
373 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43601956 |
tggaactgttttcagagacaactttatcatgtgcggggctgtgttttggtgcagaaataattttcataatttga |
43601883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 262 - 371
Target Start/End: Original strand, 22436220 - 22436329
Alignment:
| Q |
262 |
cacgtgatgcacgtgacagactgcaaattattgtcaagtggaactgttttcagagacaactttatcatgtgcggggctgtgttttggtgcagaaataatt |
361 |
Q |
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||||||||||| ||||||||| ||||||||||||||| |||||| ||| | |||| ||||||||||||||||||| | ||||||||||||||||| ||| |
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| T |
22436220 |
cacgtgatgcatgtgacagaccgcaaattattgtcaattggaaccgttataagaggcaactttatcatgtgcgggagtatgttttggtgcagaaatcatt |
22436319 |
T |
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| Q |
362 |
ttcataattt |
371 |
Q |
| |
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|||||||||| |
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| T |
22436320 |
ttcataattt |
22436329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 331 - 371
Target Start/End: Original strand, 22239084 - 22239124
Alignment:
| Q |
331 |
tgcggggctgtgttttggtgcagaaataattttcataattt |
371 |
Q |
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|||||| |||||||||||||||||||||||||||||||||| |
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| T |
22239084 |
tgcgggactgtgttttggtgcagaaataattttcataattt |
22239124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 331 - 371
Target Start/End: Original strand, 37560602 - 37560642
Alignment:
| Q |
331 |
tgcggggctgtgttttggtgcagaaataattttcataattt |
371 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||| |
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| T |
37560602 |
tgcgggactgtgttttggtgcagaaataattttcataattt |
37560642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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