View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4437_low_1 (Length: 581)

Name: NF4437_low_1
Description: NF4437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4437_low_1
NF4437_low_1
[»] chr8 (15 HSPs)
chr8 (1-573)||(5349505-5350083)
chr8 (1-83)||(26479854-26479936)
chr8 (167-208)||(29699196-29699237)
chr8 (159-203)||(12361139-12361183)
chr8 (167-203)||(26820146-26820182)
chr8 (167-203)||(40728505-40728541)
chr8 (160-199)||(14482153-14482192)
chr8 (167-201)||(8799354-8799388)
chr8 (167-208)||(34080353-34080394)
chr8 (159-208)||(42597343-42597392)
chr8 (159-199)||(11000640-11000680)
chr8 (167-199)||(11119086-11119118)
chr8 (167-203)||(38561673-38561709)
chr8 (167-199)||(39392748-39392780)
chr8 (159-203)||(40280284-40280328)
[»] chr1 (18 HSPs)
chr1 (159-210)||(49517010-49517061)
chr1 (159-203)||(14737784-14737828)
chr1 (165-203)||(36641822-36641860)
chr1 (138-201)||(45234146-45234211)
chr1 (159-208)||(1255510-1255559)
chr1 (159-204)||(4622039-4622084)
chr1 (1-86)||(28467499-28467584)
chr1 (167-207)||(44936677-44936717)
chr1 (4-59)||(10199330-10199385)
chr1 (167-202)||(15360842-15360877)
chr1 (1-64)||(26866401-26866464)
chr1 (166-208)||(49557083-49557125)
chr1 (159-208)||(36151584-36151633)
chr1 (167-208)||(37818406-37818447)
chr1 (159-208)||(50319234-50319283)
chr1 (159-203)||(4200176-4200220)
chr1 (159-203)||(11211065-11211109)
chr1 (159-195)||(40414073-40414109)
[»] chr6 (14 HSPs)
chr6 (159-208)||(24836278-24836327)
chr6 (98-199)||(5551413-5551508)
chr6 (167-203)||(5328921-5328957)
chr6 (159-199)||(31583652-31583692)
chr6 (166-208)||(28531627-28531669)
chr6 (159-208)||(29274308-29274357)
chr6 (176-208)||(5554861-5554893)
chr6 (160-208)||(6654557-6654605)
chr6 (158-198)||(9149187-9149227)
chr6 (158-198)||(9177837-9177877)
chr6 (159-199)||(24782010-24782050)
chr6 (167-199)||(30865433-30865465)
chr6 (176-208)||(31672012-31672044)
chr6 (176-208)||(33068657-33068689)
[»] chr7 (17 HSPs)
chr7 (160-208)||(28165033-28165081)
chr7 (159-203)||(39591546-39591590)
chr7 (159-208)||(28178911-28178960)
chr7 (159-208)||(35536049-35536098)
chr7 (166-199)||(42656466-42656499)
chr7 (166-203)||(46281217-46281254)
chr7 (159-199)||(1417215-1417255)
chr7 (176-208)||(1432063-1432095)
chr7 (159-199)||(2727439-2727479)
chr7 (167-199)||(2999142-2999174)
chr7 (159-199)||(12835016-12835056)
chr7 (159-203)||(23918904-23918948)
chr7 (159-199)||(28128473-28128513)
chr7 (159-199)||(30456529-30456569)
chr7 (159-199)||(30496655-30496695)
chr7 (160-208)||(43152982-43153030)
chr7 (160-208)||(49060482-49060530)
[»] chr3 (21 HSPs)
chr3 (159-199)||(26990685-26990725)
chr3 (1-85)||(49845459-49845543)
chr3 (159-208)||(1395613-1395662)
chr3 (159-208)||(48364958-48365007)
chr3 (159-203)||(10101555-10101599)
chr3 (159-203)||(10212480-10212524)
chr3 (167-203)||(23952193-23952229)
chr3 (167-203)||(54775075-54775111)
chr3 (167-210)||(24235770-24235813)
chr3 (160-203)||(32095271-32095314)
chr3 (159-197)||(25195377-25195415)
chr3 (1-35)||(46478784-46478818)
chr3 (167-208)||(24605103-24605144)
chr3 (171-208)||(36887464-36887501)
chr3 (160-208)||(2128331-2128379)
chr3 (159-203)||(10357380-10357424)
chr3 (159-199)||(15304426-15304466)
chr3 (160-200)||(33882978-33883018)
chr3 (159-199)||(45433018-45433058)
chr3 (160-208)||(48397588-48397636)
chr3 (167-199)||(49587003-49587035)
[»] chr4 (17 HSPs)
chr4 (1-64)||(17975256-17975319)
chr4 (167-208)||(47970260-47970301)
chr4 (159-208)||(49803153-49803202)
chr4 (159-199)||(4071833-4071873)
chr4 (1-85)||(25717660-25717744)
chr4 (159-203)||(30024647-30024691)
chr4 (159-203)||(49219086-49219130)
chr4 (1-48)||(32421204-32421251)
chr4 (168-199)||(46189837-46189868)
chr4 (163-208)||(6364091-6364136)
chr4 (167-208)||(19422360-19422401)
chr4 (167-208)||(35743246-35743287)
chr4 (167-208)||(51044546-51044587)
chr4 (167-199)||(20936089-20936121)
chr4 (167-203)||(23815317-23815353)
chr4 (167-203)||(29563485-29563521)
chr4 (159-203)||(47946145-47946189)
[»] chr2 (23 HSPs)
chr2 (1-64)||(3070137-3070200)
chr2 (1-64)||(3078527-3078590)
chr2 (157-203)||(6988062-6988108)
chr2 (167-208)||(10143114-10143155)
chr2 (8-88)||(25609860-25609940)
chr2 (1-32)||(29316689-29316720)
chr2 (161-199)||(1742113-1742151)
chr2 (1-39)||(9395242-9395280)
chr2 (165-199)||(31461389-31461423)
chr2 (167-208)||(38239638-38239679)
chr2 (165-210)||(39567843-39567888)
chr2 (3-48)||(40158822-40158867)
chr2 (159-208)||(40837507-40837556)
chr2 (168-201)||(42817464-42817497)
chr2 (171-203)||(1939423-1939455)
chr2 (160-208)||(2416255-2416303)
chr2 (167-203)||(3458604-3458640)
chr2 (159-199)||(11344363-11344403)
chr2 (167-199)||(17952788-17952820)
chr2 (167-199)||(26857197-26857229)
chr2 (167-203)||(28803593-28803629)
chr2 (159-203)||(29633019-29633063)
chr2 (167-199)||(32098395-32098427)
[»] chr5 (13 HSPs)
chr5 (1-83)||(34205310-34205392)
chr5 (159-199)||(10303752-10303792)
chr5 (160-203)||(32969197-32969240)
chr5 (167-201)||(29117017-29117051)
chr5 (165-199)||(35095868-35095902)
chr5 (167-208)||(7096214-7096255)
chr5 (167-208)||(35135749-35135790)
chr5 (1-33)||(7705917-7705949)
chr5 (159-199)||(10363701-10363741)
chr5 (167-199)||(14295457-14295489)
chr5 (167-199)||(28586853-28586885)
chr5 (167-199)||(37063161-37063193)
chr5 (167-199)||(37968842-37968874)
[»] scaffold0024 (1 HSPs)
scaffold0024 (159-208)||(27518-27567)
[»] scaffold0590 (1 HSPs)
scaffold0590 (167-208)||(1161-1202)
[»] scaffold0508 (1 HSPs)
scaffold0508 (167-208)||(9862-9903)
[»] scaffold0275 (1 HSPs)
scaffold0275 (167-208)||(2773-2814)


Alignment Details
Target: chr8 (Bit Score: 415; Significance: 0; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 1 - 573
Target Start/End: Original strand, 5349505 - 5350083
Alignment:
Q  1 tgtttggattgacttatttgagcatatttactaacacaagaacttgtggaactatttggaagagattgtggtaacaacttatgacaaacatgttctcaag 100  Q
    |||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5349505 tgtttggattgacttatttgagtatatctactaacacaagaacttgtgaaactatttggaagagattgtggtaacaacttatgacaaacatgttctcaag 5349604  T
Q  101 ttgttttcaacttatttttacataagcactctatgatagcttat-------agcatatatgaaaa--gaaaagaatttgacttcattttatcttttgtta 191  Q
    |||||||||||||||||||||| |||||||||||||||||||||       ||| ||||  | |   ||||| ||| |||||| |||||   ||||||||    
T  5349605 ttgttttcaacttatttttacagaagcactctatgatagcttatgaaaaatagcttatagcatatatgaaaacaatgtgactttatttt---ttttgtta 5349701  T
Q  192 tagaaataacttctacacagtttaatgataaacatttacgctatacgagtttatttaagctgtttatacaaatagcgcgttagaccaaaatgtagagttt 291  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  5349702 tagaaataacttctacacagtttaatgataaacatttatgctatacgcgtttatttaagctgtttatacaaatagtgcgttagaccaaaatgtagagttt 5349801  T
Q  292 ggacccaaaaccaaagaccataaatgggcactaaatgtagaaaaatacatcatgattttagtgttacctggaataattgatcccatgggaagaaacacaa 391  Q
    || || ||||||||||||||||||||| ||| |||||||||| |||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  5349802 gggcctaaaaccaaagaccataaatggtcacaaaatgtagaataatatatcatggttttaatgttacctggaataattgatcccatgggaagaaacacaa 5349901  T
Q  392 atagacaagctgctgtaaaaaggataaaattttgaagtatatccattcttgattgtaaccactccaaagcagcattggtatgcaagaatagtgcagcatc 491  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5349902 atagacaagctgctgtaaaaaggataaaattttgaagtatatccatccttgattgtaaccactccaaagcagcattggtatgcaagaatagtgcagcatc 5350001  T
Q  492 tgtgtcaactagatgttggaagtttttgaagaatctgtccaccatcttgaaggctcttactgtgaccactcctgatgatgtc 573  Q
    ||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||| |||||||||||||||| |||||||    
T  5350002 tgtgtcaactagatgttggaaatttttgaagaatctgtccatcatcttaaaggctctcactgtgaccactcctgctgatgtc 5350083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 26479936 - 26479854
Alignment:
Q  1 tgtttggattgacttatttgagcatatttactaacacaagaacttgtggaactatttggaagagattgtggtaacaacttatg 83  Q
    ||||||||||||||||||| ||| ||| || | ||||||| ||||||| |||||||||  |||| || ||| |||||||||||    
T  26479936 tgtttggattgacttatttaagcttatctattgacacaaggacttgtgaaactatttgcgagagcttatggaaacaacttatg 26479854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 167 - 208
Target Start/End: Complemental strand, 29699237 - 29699196
Alignment:
Q  167 tttgacttcattttatcttttgttatagaaataacttctaca 208  Q
    |||||||| |||||||||||||||||||||||||||| ||||    
T  29699237 tttgactttattttatcttttgttatagaaataacttgtaca 29699196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 12361183 - 12361139
Alignment:
Q  159 gaaaagaatttgacttcattttatcttttgttatagaaataactt 203  Q
    ||||| ||||||||||||||||||||||  |||||||||||||||    
T  12361183 gaaaacaatttgacttcattttatctttatttatagaaataactt 12361139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 26820182 - 26820146
Alignment:
Q  167 tttgacttcattttatcttttgttatagaaataactt 203  Q
    |||||||| ||||||||||||||||||||||||||||    
T  26820182 tttgactttattttatcttttgttatagaaataactt 26820146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 40728505 - 40728541
Alignment:
Q  167 tttgacttcattttatcttttgttatagaaataactt 203  Q
    |||||||| ||||||||||||||||||||||||||||    
T  40728505 tttgactttattttatcttttgttatagaaataactt 40728541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 199
Target Start/End: Complemental strand, 14482192 - 14482153
Alignment:
Q  160 aaaagaatttgacttcattttatcttttgttatagaaata 199  Q
    |||| |||||||||| ||||||||||||||||||||||||    
T  14482192 aaaacaatttgactttattttatcttttgttatagaaata 14482153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 167 - 201
Target Start/End: Complemental strand, 8799388 - 8799354
Alignment:
Q  167 tttgacttcattttatcttttgttatagaaataac 201  Q
    |||||||| ||||||||||||||||||||||||||    
T  8799388 tttgactttattttatcttttgttatagaaataac 8799354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 208
Target Start/End: Original strand, 34080353 - 34080394
Alignment:
Q  167 tttgacttcattttatcttttgttatagaaataacttctaca 208  Q
    ||||||||||||||||||||||||| ||||||| ||| ||||    
T  34080353 tttgacttcattttatcttttgttaaagaaatagcttataca 34080394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 42597392 - 42597343
Alignment:
Q  159 gaaaagaatttgacttcattttatcttttgttatagaaataacttctaca 208  Q
    ||||| ||||| |||| |||||||||||||||||||||||| ||| ||||    
T  42597392 gaaaacaattttactttattttatcttttgttatagaaatagcttataca 42597343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 159 - 199
Target Start/End: Original strand, 11000640 - 11000680
Alignment:
Q  159 gaaaagaatttgacttcattttatcttttgttatagaaata 199  Q
    ||||| |||||||||| ||||||||||||||||| ||||||    
T  11000640 gaaaacaatttgactttattttatcttttgttatggaaata 11000680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 167 - 199
Target Start/End: Original strand, 11119086 - 11119118
Alignment:
Q  167 tttgacttcattttatcttttgttatagaaata 199  Q
    |||||||| ||||||||||||||||||||||||    
T  11119086 tttgactttattttatcttttgttatagaaata 11119118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 38561709 - 38561673
Alignment:
Q  167 tttgacttcattttatcttttgttatagaaataactt 203  Q
    |||||||| |||||||||||||||||| |||||||||    
T  38561709 tttgactttattttatcttttgttatataaataactt 38561673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 167 - 199
Target Start/End: Original strand, 39392748 - 39392780
Alignment:
Q  167 tttgacttcattttatcttttgttatagaaata 199  Q
    |||||||| ||||||||||||||||||||||||    
T  39392748 tttgactttattttatcttttgttatagaaata 39392780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 40280284 - 40280328
Alignment:
Q  159 gaaaagaatttgacttcattttatcttttgttatagaaataactt 203  Q
    ||||| ||||| |||| ||||||||||||||| ||||||||||||    
T  40280284 gaaaacaattttactttattttatcttttgttgtagaaataactt 40280328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 159 - 210
Target Start/End: Complemental strand, 49517061 - 49517010
Alignment:
Q  159 gaaaagaatttgacttcattttatcttttgttatagaaataacttctacaca 210  Q
    ||||| |||||||||| |||||||||||||||||||||||||||| ||||||    
T  49517061 gaaaacaatttgactttattttatcttttgttatagaaataacttatacaca 49517010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 14737784 - 14737828
Alignment:
Q  159 gaaaagaatttgacttcattttatcttttgttatagaaataactt 203  Q
    ||||| |||||||||| ||||||||||||||||||||||||||||    
T  14737784 gaaaacaatttgactttattttatcttttgttatagaaataactt 14737828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 165 - 203
Target Start/End: Complemental strand, 36641860 - 36641822
Alignment:
Q  165 aatttgacttcattttatcttttgttatagaaataactt 203  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  36641860 aatttgactttattttatcttttgttatagaaataactt 36641822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 138 - 201
Target Start/End: Complemental strand, 45234211 - 45234146
Alignment:
Q  138 agcttatagcatatatgaa--aagaaaagaatttgacttcattttatcttttgttatagaaataac 201  Q
    |||||||||||||||| ||  | ||||| |||||||||| |||||||||||| |||||||||||||    
T  45234211 agcttatagcatatataaattatgaaaataatttgactttattttatcttttattatagaaataac 45234146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 159 - 208
Target Start/End: Original strand, 1255510 - 1255559
Alignment:
Q  159 gaaaagaatttgacttcattttatcttttgttatagaaataacttctaca 208  Q
    ||||||||||||||||||||| |||||||  |||||||||| ||||||||    
T  1255510 gaaaagaatttgacttcatttcatcttttactatagaaatagcttctaca 1255559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 159 - 204
Target Start/End: Complemental strand, 4622084 - 4622039
Alignment:
Q  159 gaaaagaatttgacttcattttatcttttgttatagaaataacttc 204  Q
    ||||||| ||||| ||||||| ||||||||||||||||||||||||    
T  4622084 gaaaagagtttgaattcatttgatcttttgttatagaaataacttc 4622039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 28467584 - 28467499
Alignment:
Q  1 tgtttggattgacttatttgagcatatttactaacacaagaacttgtggaactatttggaagagattgtggtaacaacttatgaca 86  Q
    ||||||||||||||||||||||  ||||||||| ||  || |||| ||  ||||||||| ||||||| ||| || |||||||||||    
T  28467584 tgtttggattgacttatttgagtttatttactagcattagcacttatgagactatttgggagagattatggaaataacttatgaca 28467499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 167 - 207
Target Start/End: Original strand, 44936677 - 44936717
Alignment:
Q  167 tttgacttcattttatcttttgttatagaaataacttctac 207  Q
    |||||||| || |||||||||||||||||||||||||||||    
T  44936677 tttgactttatcttatcttttgttatagaaataacttctac 44936717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 10199330 - 10199385
Alignment:
Q  4 ttggattgacttatttgagcatatttactaacacaagaacttgtggaactatttgg 59  Q
    |||||||||||||||||||| ||| |||||||| ||| |||||||  |||||||||    
T  10199330 ttggattgacttatttgagcttatctactaacataagcacttgtgacactatttgg 10199385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 202
Target Start/End: Complemental strand, 15360877 - 15360842
Alignment:
Q  167 tttgacttcattttatcttttgttatagaaataact 202  Q
    |||||||| |||||||||||||||||||||||||||    
T  15360877 tttgactttattttatcttttgttatagaaataact 15360842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 26866464 - 26866401
Alignment:
Q  1 tgtttggattgacttatttgagcatatttactaacacaagaacttgtggaactatttggaagag 64  Q
    ||||||||||||||||||| ||| ||| |||||||||||  |||| ||  ||||||||||||||    
T  26866464 tgtttggattgacttatttcagcttatctactaacacaaatacttctgagactatttggaagag 26866401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 166 - 208
Target Start/End: Complemental strand, 49557125 - 49557083
Alignment:
Q  166 atttgacttcattttatcttttgttatagaaataacttctaca 208  Q
    |||| |||| |||||||||||||||||||||||||||| ||||    
T  49557125 atttaactttattttatcttttgttatagaaataacttataca 49557083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 208
Target Start/End: Original strand, 36151584 - 36151633
Alignment:
Q  159 gaaaagaatttgacttcattttatcttttgttatagaaataacttctaca 208  Q
    ||||| |||||||||| ||||||||||||||||| |||||| ||| ||||    
T  36151584 gaaaacaatttgactttattttatcttttgttattgaaatagcttataca 36151633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 208
Target Start/End: Complemental strand, 37818447 - 37818406
Alignment:
Q  167 tttgacttcattttatcttttgttatagaaataacttctaca 208  Q
    ||||||||| |||||||| |||||||||||||||||| ||||    
T  37818447 tttgacttcgttttatctcttgttatagaaataacttataca 37818406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 50319283 - 50319234
Alignment:
Q  159 gaaaagaatttgacttcattttatcttttgttatagaaataacttctaca 208  Q
    ||||| || ||||||| |||||||||||||||||||||||| ||| ||||    
T  50319283 gaaaacaacttgactttattttatcttttgttatagaaatagcttataca 50319234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 4200220 - 4200176
Alignment:
Q  159 gaaaagaatttgacttcattttatcttttgttatagaaataactt 203  Q
    ||||| || ||||||| |||||||||||||||||| |||||||||    
T  4200220 gaaaacaacttgactttattttatcttttgttataaaaataactt 4200176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 11211109 - 11211065
Alignment:
Q  159 gaaaagaatttgacttcattttatcttttgttatagaaataactt 203  Q
    ||||| ||||| |||| ||||||||||||||| ||||||||||||    
T  11211109 gaaaaaaatttaactttattttatcttttgttctagaaataactt 11211065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 159 - 195
Target Start/End: Original strand, 40414073 - 40414109
Alignment:
Q  159 gaaaagaatttgacttcattttatcttttgttataga 195  Q
    ||||| || ||||||||||||||||||||||||||||    
T  40414073 gaaaataagttgacttcattttatcttttgttataga 40414109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 159 - 208
Target Start/End: Original strand, 24836278 - 24836327
Alignment:
Q  159 gaaaagaatttgacttcattttatcttttgttatagaaataacttctaca 208  Q
    ||||| |||||||||| |||||||||||||||||||||||||||| ||||    
T  24836278 gaaaacaatttgactttattttatcttttgttatagaaataacttataca 24836327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 98 - 199
Target Start/End: Complemental strand, 5551508 - 5551413
Alignment:
Q  98 aagttgttttcaacttatttttacataagcactctatgatagcttatagcatatatgaaaagaaaagaatttgacttcattttatcttttgttatagaaa 197  Q
    |||||||||||||||||| ||  ||| |||  || | ||||||||||||||||||| ||||    | |||||||||| |||||||||||||||||| |||    
T  5551508 aagttgttttcaacttatctt--cattagctgtccaggatagcttatagcatatataaaaa----acaatttgactttattttatcttttgttatataaa 5551415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 5328957 - 5328921
Alignment:
Q  167 tttgacttcattttatcttttgttatagaaataactt 203  Q
    |||||||| ||||||||||||||||||||||||||||    
T  5328957 tttgactttattttatcttttgttatagaaataactt 5328921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 159 - 199
Target Start/End: Complemental strand, 31583692 - 31583652
Alignment:
Q  159 gaaaagaatttgacttcattttatcttttgttatagaaata 199  Q
    ||||| |||||||||||||||||||| ||||||||||||||    
T  31583692 gaaaacaatttgacttcattttatctcttgttatagaaata 31583652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 166 - 208
Target Start/End: Original strand, 28531627 - 28531669
Alignment:
Q  166 atttgacttcattttatcttttgttatagaaataacttctaca 208  Q
    ||||||||| |||||||||||||||||| ||||||||| ||||    
T  28531627 atttgactttattttatcttttgttatataaataacttataca 28531669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 208
Target Start/End: Original strand, 29274308 - 29274357
Alignment:
Q  159 gaaaagaatttgacttcattttatcttttgttatagaaataacttctaca 208  Q
    ||||| |||||||||| ||||||||||||| |||||||||| ||| ||||    
T  29274308 gaaaacaatttgactttattttatcttttgctatagaaatagcttataca 29274357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 5554861 - 5554893
Alignment:
Q  176 attttatcttttgttatagaaataacttctaca 208  Q
    |||||||||||||||||||||||||||| ||||    
T  5554861 attttatcttttgttatagaaataacttataca 5554893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 160 - 208
Target Start/End: Complemental strand, 6654605 - 6654557
Alignment:
Q  160 aaaagaatttgacttcattttatcttttgttatagaaataacttctaca 208  Q
    |||| |||||||||| |||||||  ||||||||||||||||||| ||||    
T  6654605 aaaacaatttgacttaattttattatttgttatagaaataacttataca 6654557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 158 - 198
Target Start/End: Original strand, 9149187 - 9149227
Alignment:
Q  158 agaaaagaatttgacttcattttatcttttgttatagaaat 198  Q
    ||||||||||||||||| ||||||| ||||||||| |||||    
T  9149187 agaaaagaatttgactttattttatgttttgttatcgaaat 9149227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 9177877 - 9177837
Alignment:
Q  158 agaaaagaatttgacttcattttatcttttgttatagaaat 198  Q
    ||||||||||||||||| ||||||| ||||||||| |||||    
T  9177877 agaaaagaatttgactttattttatgttttgttatcgaaat 9177837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 159 - 199
Target Start/End: Complemental strand, 24782050 - 24782010
Alignment:
Q  159 gaaaagaatttgacttcattttatcttttgttatagaaata 199  Q
    ||||| ||||||| || ||||||||||||||||||||||||    
T  24782050 gaaaacaatttgatttgattttatcttttgttatagaaata 24782010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 167 - 199
Target Start/End: Complemental strand, 30865465 - 30865433
Alignment:
Q  167 tttgacttcattttatcttttgttatagaaata 199  Q
    |||||||| ||||||||||||||||||||||||    
T  30865465 tttgactttattttatcttttgttatagaaata 30865433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 31672044 - 31672012
Alignment:
Q  176 attttatcttttgttatagaaataacttctaca 208  Q
    |||||||||||||||||||||||||||| ||||    
T  31672044 attttatcttttgttatagaaataacttataca 31672012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 33068657 - 33068689
Alignment:
Q  176 attttatcttttgttatagaaataacttctaca 208  Q
    |||||||||||||||||||||||||||| ||||    
T  33068657 attttatcttttgttatagaaataacttataca 33068689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 160 - 208
Target Start/End: Complemental strand, 28165081 - 28165033
Alignment:
Q  160 aaaagaatttgacttcattttatcttttgttatagaaataacttctaca 208  Q
    |||| ||||||||||||||||||||||||||||||||| ||||| ||||    
T  28165081 aaaacaatttgacttcattttatcttttgttatagaaagaacttataca 28165033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 39591546 - 39591590
Alignment:
Q  159 gaaaagaatttgacttcattttatcttttgttatagaaataactt 203  Q
    ||||| |||||||||| ||||||||||||||||||||||||||||    
T  39591546 gaaaacaatttgactttattttatcttttgttatagaaataactt 39591590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 28178960 - 28178911
Alignment:
Q  159 gaaaagaatttgacttcattttatcttttgttatagaaataacttctaca 208  Q
    ||||| ||| |||||| |||||||||||||||||||||||| ||| ||||    
T  28178960 gaaaacaatatgactttattttatcttttgttatagaaatagcttataca 28178911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 35536098 - 35536049
Alignment:
Q  159 gaaaagaatttgacttcattttatcttttgttatagaaataacttctaca 208  Q
    ||||| |||||||||| |||||||||| ||||||||||||| ||| ||||    
T  35536098 gaaaacaatttgactttattttatcttatgttatagaaatagcttataca 35536049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 199
Target Start/End: Complemental strand, 42656499 - 42656466
Alignment:
Q  166 atttgacttcattttatcttttgttatagaaata 199  Q
    ||||||||| ||||||||||||||||||||||||    
T  42656499 atttgactttattttatcttttgttatagaaata 42656466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 203
Target Start/End: Original strand, 46281217 - 46281254
Alignment:
Q  166 atttgacttcattttatcttttgttatagaaataactt 203  Q
    ||||||||| ||||||| ||||||||||||||||||||    
T  46281217 atttgactttattttattttttgttatagaaataactt 46281254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 159 - 199
Target Start/End: Complemental strand, 1417255 - 1417215
Alignment:
Q  159 gaaaagaatttgacttcattttatcttttgttatagaaata 199  Q
    ||||| |||||||||| |||||||||||||||||| |||||    
T  1417255 gaaaacaatttgactttattttatcttttgttatataaata 1417215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 1432063 - 1432095
Alignment:
Q  176 attttatcttttgttatagaaataacttctaca 208  Q
    |||||||||||||||||||||||||||| ||||    
T  1432063 attttatcttttgttatagaaataacttataca 1432095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 159 - 199
Target Start/End: Original strand, 2727439 - 2727479
Alignment:
Q  159 gaaaagaatttgacttcattttatcttttgttatagaaata 199  Q
    ||||||| |||| ||| ||||||||||||||||||||||||    
T  2727439 gaaaagagtttgcctttattttatcttttgttatagaaata 2727479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 167 - 199
Target Start/End: Complemental strand, 2999174 - 2999142
Alignment:
Q  167 tttgacttcattttatcttttgttatagaaata 199  Q
    |||||||| ||||||||||||||||||||||||    
T  2999174 tttgactttattttatcttttgttatagaaata 2999142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 159 - 199
Target Start/End: Original strand, 12835016 - 12835056
Alignment:
Q  159 gaaaagaatttgacttcattttatcttttgttatagaaata 199  Q
    ||||| |||||||||| ||||||||||||||| ||||||||    
T  12835016 gaaaacaatttgactttattttatcttttgttgtagaaata 12835056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 23918948 - 23918904
Alignment:
Q  159 gaaaagaatttgacttcattttatcttttgttatagaaataactt 203  Q
    ||||| |||||||||| |||||||||||||| ||||| |||||||    
T  23918948 gaaaacaatttgactttattttatcttttgtaatagagataactt 23918904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 159 - 199
Target Start/End: Original strand, 28128473 - 28128513
Alignment:
Q  159 gaaaagaatttgacttcattttatcttttgttatagaaata 199  Q
    ||||| ||||||||||||||||||||| ||| |||||||||    
T  28128473 gaaaataatttgacttcattttatcttgtgtaatagaaata 28128513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 159 - 199
Target Start/End: Original strand, 30456529 - 30456569
Alignment:
Q  159 gaaaagaatttgacttcattttatcttttgttatagaaata 199  Q
    ||||| |||||||||| ||||||||||||||| ||||||||    
T  30456529 gaaaacaatttgactttattttatcttttgttttagaaata 30456569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 159 - 199
Target Start/End: Complemental strand, 30496695 - 30496655
Alignment:
Q  159 gaaaagaatttgacttcattttatcttttgttatagaaata 199  Q
    ||||| |||||||||| ||||||| ||||||||||||||||    
T  30496695 gaaaacaatttgactttattttatattttgttatagaaata 30496655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 160 - 208
Target Start/End: Original strand, 43152982 - 43153030
Alignment:
Q  160 aaaagaatttgacttcattttatcttttgttatagaaataacttctaca 208  Q
    |||| ||||| |||| |||||||||||||||||||||||| ||| ||||    
T  43152982 aaaacaatttaactttattttatcttttgttatagaaatagcttataca 43153030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 160 - 208
Target Start/End: Complemental strand, 49060530 - 49060482
Alignment:
Q  160 aaaagaatttgacttcattttatcttttgttatagaaataacttctaca 208  Q
    |||| |||||||||| ||||||| |||||||||||||||| ||| ||||    
T  49060530 aaaataatttgactttattttattttttgttatagaaatagcttataca 49060482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 159 - 199
Target Start/End: Complemental strand, 26990725 - 26990685
Alignment:
Q  159 gaaaagaatttgacttcattttatcttttgttatagaaata 199  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  26990725 gaaaagaatttgactttattttatcttttgttatagaaata 26990685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 49845459 - 49845543
Alignment:
Q  1 tgtttggattgacttatttgagcatatttactaacacaagaacttgtggaactatttggaagagattgtggtaacaacttatgac 85  Q
    ||||||||||||||||||||||| ||| |||||  | || ||||| || |||||||||| |||| || ||| |||||||||||||    
T  49845459 tgtttggattgacttatttgagcttatatactagtataaaaacttatgaaactatttgggagagcttatggaaacaacttatgac 49845543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 1395662 - 1395613
Alignment:
Q  159 gaaaagaatttgacttcattttatcttttgttatagaaataacttctaca 208  Q
    ||||| |||||||||| |||||||||||||||||||||||| ||| ||||    
T  1395662 gaaaataatttgactttattttatcttttgttatagaaatagcttataca 1395613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 159 - 208
Target Start/End: Original strand, 48364958 - 48365007
Alignment:
Q  159 gaaaagaatttgacttcattttatcttttgttatagaaataacttctaca 208  Q
    ||||| |||||||||| ||||||||||||||||| |||||||||| ||||    
T  48364958 gaaaacaatttgactttattttatcttttgttatcgaaataacttataca 48365007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 10101555 - 10101599
Alignment:
Q  159 gaaaagaatttgacttcattttatcttttgttatagaaataactt 203  Q
    ||||| ||||| |||| ||||||||||||||||||||||||||||    
T  10101555 gaaaacaatttaactttattttatcttttgttatagaaataactt 10101599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 10212480 - 10212524
Alignment:
Q  159 gaaaagaatttgacttcattttatcttttgttatagaaataactt 203  Q
    ||||| ||||| |||| ||||||||||||||||||||||||||||    
T  10212480 gaaaacaatttaactttattttatcttttgttatagaaataactt 10212524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 23952193 - 23952229
Alignment:
Q  167 tttgacttcattttatcttttgttatagaaataactt 203  Q
    |||||||| ||||||||||||||||||||||||||||    
T  23952193 tttgacttaattttatcttttgttatagaaataactt 23952229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 54775111 - 54775075
Alignment:
Q  167 tttgacttcattttatcttttgttatagaaataactt 203  Q
    |||||||| ||||||||||||||||||||||||||||    
T  54775111 tttgactttattttatcttttgttatagaaataactt 54775075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 210
Target Start/End: Original strand, 24235770 - 24235813
Alignment:
Q  167 tttgacttcattttatcttttgttatagaaataacttctacaca 210  Q
    |||||||| || ||||||||||||||||||||||||| ||||||    
T  24235770 tttgactttatattatcttttgttatagaaataacttatacaca 24235813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 203
Target Start/End: Original strand, 32095271 - 32095314
Alignment:
Q  160 aaaagaatttgacttcattttatcttttgttatagaaataactt 203  Q
    |||| ||||| |||| ||||||||||||||||||||||||||||    
T  32095271 aaaacaatttaacttaattttatcttttgttatagaaataactt 32095314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 159 - 197
Target Start/End: Complemental strand, 25195415 - 25195377
Alignment:
Q  159 gaaaagaatttgacttcattttatcttttgttatagaaa 197  Q
    ||||| |||||||||| ||||||||||||||||||||||    
T  25195415 gaaaataatttgactttattttatcttttgttatagaaa 25195377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 46478818 - 46478784
Alignment:
Q  1 tgtttggattgacttatttgagcatatttactaac 35  Q
    ||||||||||||||||||||||||||| |||||||    
T  46478818 tgtttggattgacttatttgagcatatctactaac 46478784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 208
Target Start/End: Original strand, 24605103 - 24605144
Alignment:
Q  167 tttgacttcattttatcttttgttatagaaataacttctaca 208  Q
    |||||||| |||| ||||||||||||||||||||||| ||||    
T  24605103 tttgactttatttcatcttttgttatagaaataacttataca 24605144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 208
Target Start/End: Complemental strand, 36887501 - 36887464
Alignment:
Q  171 acttcattttatcttttgttatagaaataacttctaca 208  Q
    |||| |||||||||||||||||||||||||||| ||||    
T  36887501 acttaattttatcttttgttatagaaataacttataca 36887464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 160 - 208
Target Start/End: Original strand, 2128331 - 2128379
Alignment:
Q  160 aaaagaatttgacttcattttatcttttgttatagaaataacttctaca 208  Q
    |||| ||||| |||| |||||||||||||||||||||||| ||| ||||    
T  2128331 aaaacaatttaactttattttatcttttgttatagaaatagcttataca 2128379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 10357424 - 10357380
Alignment:
Q  159 gaaaagaatttgacttcattttatcttttgttatagaaataactt 203  Q
    ||||| ||||| || | ||||||||||||||||||||||||||||    
T  10357424 gaaaaaaatttaacattattttatcttttgttatagaaataactt 10357380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 159 - 199
Target Start/End: Original strand, 15304426 - 15304466
Alignment:
Q  159 gaaaagaatttgacttcattttatcttttgttatagaaata 199  Q
    ||||| ||||| |||| ||||||||||||||||||||||||    
T  15304426 gaaaacaatttaactttattttatcttttgttatagaaata 15304466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 160 - 200
Target Start/End: Complemental strand, 33883018 - 33882978
Alignment:
Q  160 aaaagaatttgacttcattttatcttttgttatagaaataa 200  Q
    |||| ||||| |||| |||||||||||||||||||||||||    
T  33883018 aaaataatttcactttattttatcttttgttatagaaataa 33882978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 159 - 199
Target Start/End: Original strand, 45433018 - 45433058
Alignment:
Q  159 gaaaagaatttgacttcattttatcttttgttatagaaata 199  Q
    ||||| ||||| ||||||||||||||||| |||||||||||    
T  45433018 gaaaacaatttaacttcattttatcttttcttatagaaata 45433058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 160 - 208
Target Start/End: Complemental strand, 48397636 - 48397588
Alignment:
Q  160 aaaagaatttgacttcattttatcttttgttatagaaataacttctaca 208  Q
    |||| |||||||||| |||||||||||| ||||| ||||||||| ||||    
T  48397636 aaaacaatttgactttattttatcttttattataaaaataacttataca 48397588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 167 - 199
Target Start/End: Original strand, 49587003 - 49587035
Alignment:
Q  167 tttgacttcattttatcttttgttatagaaata 199  Q
    |||||||| ||||||||||||||||||||||||    
T  49587003 tttgactttattttatcttttgttatagaaata 49587035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 17975256 - 17975319
Alignment:
Q  1 tgtttggattgacttatttgagcatatttactaacacaagaacttgtggaactatttggaagag 64  Q
    ||||||||||||||||||||||| ||| ||| |||||||  ||||||  |||||||||||||||    
T  17975256 tgtttggattgacttatttgagcttatctaccaacacaaacacttgtcaaactatttggaagag 17975319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 167 - 208
Target Start/End: Complemental strand, 47970301 - 47970260
Alignment:
Q  167 tttgacttcattttatcttttgttatagaaataacttctaca 208  Q
    ||||||||||||||||||||||||||||||||| ||| ||||    
T  47970301 tttgacttcattttatcttttgttatagaaatagcttataca 47970260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 49803202 - 49803153
Alignment:
Q  159 gaaaagaatttgacttcattttatcttttgttatagaaataacttctaca 208  Q
    ||||| ||||| |||||||||||||||||| |||||||||||||| ||||    
T  49803202 gaaaacaatttaacttcattttatcttttgctatagaaataacttataca 49803153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 159 - 199
Target Start/End: Complemental strand, 4071873 - 4071833
Alignment:
Q  159 gaaaagaatttgacttcattttatcttttgttatagaaata 199  Q
    ||||| |||||||||| ||||||||||||||||||||||||    
T  4071873 gaaaataatttgactttattttatcttttgttatagaaata 4071833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 25717744 - 25717660
Alignment:
Q  1 tgtttggattgacttatttgagcatatttactaacacaagaacttgtggaactatttggaagagattgtggtaacaacttatgac 85  Q
    ||||||||||| ||||||||||| ||| |||  ||| ||| ||||||| || | |||||||||| || ||| |||||||||||||    
T  25717744 tgtttggattgtcttatttgagcttatgtaccgacataagcacttgtgaaattgtttggaagagcttatggaaacaacttatgac 25717660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 30024691 - 30024647
Alignment:
Q  159 gaaaagaatttgacttcattttatcttttgttatagaaataactt 203  Q
    ||||| ||||| |||| ||||||||||||||||||||||||||||    
T  30024691 gaaaacaattttactttattttatcttttgttatagaaataactt 30024647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 49219130 - 49219086
Alignment:
Q  159 gaaaagaatttgacttcattttatcttttgttatagaaataactt 203  Q
    ||||| |||||||||| ||||||| ||||||||||||||||||||    
T  49219130 gaaaataatttgactttattttatattttgttatagaaataactt 49219086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 32421251 - 32421204
Alignment:
Q  1 tgtttggattgacttatttgagcatatttactaacacaagaacttgtg 48  Q
    |||||||||||||||||||||||||||| |||| || ||| |||||||    
T  32421251 tgtttggattgacttatttgagcatattcactagcataaggacttgtg 32421204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 199
Target Start/End: Original strand, 46189837 - 46189868
Alignment:
Q  168 ttgacttcattttatcttttgttatagaaata 199  Q
    ||||||||||||||||||||||||||||||||    
T  46189837 ttgacttcattttatcttttgttatagaaata 46189868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 208
Target Start/End: Complemental strand, 6364136 - 6364091
Alignment:
Q  163 agaatttgacttcattttatcttttgttatagaaataacttctaca 208  Q
    ||||||| |||| |||||||||||||||||||||||| ||| ||||    
T  6364136 agaatttcactttattttatcttttgttatagaaatagcttataca 6364091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 208
Target Start/End: Complemental strand, 19422401 - 19422360
Alignment:
Q  167 tttgacttcattttatcttttgttatagaaataacttctaca 208  Q
    |||||||| ||| |||||||||||||||||||||||| ||||    
T  19422401 tttgactttattatatcttttgttatagaaataacttataca 19422360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 208
Target Start/End: Complemental strand, 35743287 - 35743246
Alignment:
Q  167 tttgacttcattttatcttttgttatagaaataacttctaca 208  Q
    |||| ||| |||||||||||||||||||||||||||| ||||    
T  35743287 tttgcctttattttatcttttgttatagaaataacttgtaca 35743246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 208
Target Start/End: Original strand, 51044546 - 51044587
Alignment:
Q  167 tttgacttcattttatcttttgttatagaaataacttctaca 208  Q
    |||||||| |||||||||||||||||||||||| ||| ||||    
T  51044546 tttgactttattttatcttttgttatagaaatagcttataca 51044587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 167 - 199
Target Start/End: Original strand, 20936089 - 20936121
Alignment:
Q  167 tttgacttcattttatcttttgttatagaaata 199  Q
    |||||||| ||||||||||||||||||||||||    
T  20936089 tttgactttattttatcttttgttatagaaata 20936121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 23815353 - 23815317
Alignment:
Q  167 tttgacttcattttatcttttgttatagaaataactt 203  Q
    |||||| | ||||||||||||||||||||||||||||    
T  23815353 tttgacattattttatcttttgttatagaaataactt 23815317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 29563485 - 29563521
Alignment:
Q  167 tttgacttcattttatcttttgttatagaaataactt 203  Q
    |||||||||||||||| ||||||| ||||||||||||    
T  29563485 tttgacttcattttatattttgttgtagaaataactt 29563521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 47946189 - 47946145
Alignment:
Q  159 gaaaagaatttgacttcattttatcttttgttatagaaataactt 203  Q
    ||||| ||||| |||||||||||||||  ||||||||||||||||    
T  47946189 gaaaacaatttaacttcattttatcttacgttatagaaataactt 47946145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 3070137 - 3070200
Alignment:
Q  1 tgtttggattgacttatttgagcatatttactaacacaagaacttgtggaactatttggaagag 64  Q
    |||||||||||| |||||||||| ||| ||| |||||||  |||||| ||||||||||||||||    
T  3070137 tgtttggattgatttatttgagcttatctaccaacacaaacacttgtcgaactatttggaagag 3070200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 3078527 - 3078590
Alignment:
Q  1 tgtttggattgacttatttgagcatatttactaacacaagaacttgtggaactatttggaagag 64  Q
    ||||||||||||||||||||||| ||| ||| |||||||  ||||||  |||||||||||||||    
T  3078527 tgtttggattgacttatttgagcttatctaccaacacaaacacttgtcaaactatttggaagag 3078590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 157 - 203
Target Start/End: Complemental strand, 6988108 - 6988062
Alignment:
Q  157 aagaaaagaatttgacttcattttatcttttgttatagaaataactt 203  Q
    ||||||| |||||||||| |||||||||||||||||||||| |||||    
T  6988108 aagaaaataatttgactttattttatcttttgttatagaaaaaactt 6988062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 167 - 208
Target Start/End: Complemental strand, 10143155 - 10143114
Alignment:
Q  167 tttgacttcattttatcttttgttatagaaataacttctaca 208  Q
    |||||||| |||||||||||||||||||||||||||| ||||    
T  10143155 tttgacttaattttatcttttgttatagaaataacttataca 10143114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 25609940 - 25609860
Alignment:
Q  8 attgacttatttgagcatatttactaacacaagaacttgtggaactatttggaagagattgtggtaacaacttatgacaaa 88  Q
    |||| ||||||||||| ||| |||||||| |||||||||||  |||  |||||| || || ||| ||||||||||||||||    
T  25609940 attggcttatttgagcttatctactaacataagaacttgtgagactgcttggaatagcttatggaaacaacttatgacaaa 25609860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 29316689 - 29316720
Alignment:
Q  1 tgtttggattgacttatttgagcatatttact 32  Q
    ||||||||||||||||||||||||||||||||    
T  29316689 tgtttggattgacttatttgagcatatttact 29316720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 161 - 199
Target Start/End: Original strand, 1742113 - 1742151
Alignment:
Q  161 aaagaatttgacttcattttatcttttgttatagaaata 199  Q
    ||||| |||||||||||||||| ||||||||||||||||    
T  1742113 aaagagtttgacttcattttatattttgttatagaaata 1742151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 9395280 - 9395242
Alignment:
Q  1 tgtttggattgacttatttgagcatatttactaacacaa 39  Q
    ||||||||||||||||||||||| ||||||||| |||||    
T  9395280 tgtttggattgacttatttgagcttatttactagcacaa 9395242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 165 - 199
Target Start/End: Complemental strand, 31461423 - 31461389
Alignment:
Q  165 aatttgacttcattttatcttttgttatagaaata 199  Q
    |||||||||| ||||||||||||||||||||||||    
T  31461423 aatttgactttattttatcttttgttatagaaata 31461389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 208
Target Start/End: Original strand, 38239638 - 38239679
Alignment:
Q  167 tttgacttcattttatcttttgttatagaaataacttctaca 208  Q
    |||||||| |||||||||||||||||||||||| ||| ||||    
T  38239638 tttgacttgattttatcttttgttatagaaatagcttataca 38239679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 210
Target Start/End: Complemental strand, 39567888 - 39567843
Alignment:
Q  165 aatttgacttcattttatcttttgttatagaaataacttctacaca 210  Q
    ||||| |||| |||||||||||||||||||||||| ||| ||||||    
T  39567888 aatttaactttattttatcttttgttatagaaatatcttatacaca 39567843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 40158867 - 40158822
Alignment:
Q  3 tttggattgacttatttgagcatatttactaacacaagaacttgtg 48  Q
    ||||||||| ||||||||||||||| |||| ||| |||||||||||    
T  40158867 tttggattggcttatttgagcatatctactgacataagaacttgtg 40158822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 208
Target Start/End: Original strand, 40837507 - 40837556
Alignment:
Q  159 gaaaagaatttgacttcattttatcttttgttatagaaataacttctaca 208  Q
    ||||| |||||||||| | |||||||||||||||||||||| ||| ||||    
T  40837507 gaaaacaatttgactttaatttatcttttgttatagaaatagcttataca 40837556  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 201
Target Start/End: Original strand, 42817464 - 42817497
Alignment:
Q  168 ttgacttcattttatcttttgttatagaaataac 201  Q
    ||||||||||||||||||||| ||||||||||||    
T  42817464 ttgacttcattttatcttttggtatagaaataac 42817497  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 171 - 203
Target Start/End: Original strand, 1939423 - 1939455
Alignment:
Q  171 acttcattttatcttttgttatagaaataactt 203  Q
    |||| ||||||||||||||||||||||||||||    
T  1939423 actttattttatcttttgttatagaaataactt 1939455  T

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Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 160 - 208
Target Start/End: Complemental strand, 2416303 - 2416255
Alignment:
Q  160 aaaagaatttgacttcattttatcttttgttatagaaataacttctaca 208  Q
    |||| ||||| |||||||||||||||||| || ||||||||||| ||||    
T  2416303 aaaacaatttaacttcattttatcttttgctacagaaataacttataca 2416255  T

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Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 3458640 - 3458604
Alignment:
Q  167 tttgacttcattttatcttttgttatagaaataactt 203  Q
    |||||||| |||||||||||||||||| |||||||||    
T  3458640 tttgactttattttatcttttgttataaaaataactt 3458604  T

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Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 159 - 199
Target Start/End: Original strand, 11344363 - 11344403
Alignment:
Q  159 gaaaagaatttgacttcattttatcttttgttatagaaata 199  Q
    ||||| ||||||||||  |||||||||||||||||||||||    
T  11344363 gaaaacaatttgactttcttttatcttttgttatagaaata 11344403  T

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Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 167 - 199
Target Start/End: Original strand, 17952788 - 17952820
Alignment:
Q  167 tttgacttcattttatcttttgttatagaaata 199  Q
    |||||||| ||||||||||||||||||||||||    
T  17952788 tttgactttattttatcttttgttatagaaata 17952820  T

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Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 167 - 199
Target Start/End: Original strand, 26857197 - 26857229
Alignment:
Q  167 tttgacttcattttatcttttgttatagaaata 199  Q
    ||||||||||||||||||| |||||||||||||    
T  26857197 tttgacttcattttatcttgtgttatagaaata 26857229  T

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Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 28803593 - 28803629
Alignment:
Q  167 tttgacttcattttatcttttgttatagaaataactt 203  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  28803593 tttgactttattttatcttttgttatcgaaataactt 28803629  T

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Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 29633063 - 29633019
Alignment:
Q  159 gaaaagaatttgacttcattttatcttttgttatagaaataactt 203  Q
    ||||| |||||||||| ||| ||| ||||||||||||||||||||    
T  29633063 gaaaacaatttgactttattctattttttgttatagaaataactt 29633019  T

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Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 167 - 199
Target Start/End: Original strand, 32098395 - 32098427
Alignment:
Q  167 tttgacttcattttatcttttgttatagaaata 199  Q
    |||||||| ||||||||||||||||||||||||    
T  32098395 tttgactttattttatcttttgttatagaaata 32098427  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 34205392 - 34205310
Alignment:
Q  1 tgtttggattgacttatttgagcatatttactaacacaagaacttgtggaactatttggaagagattgtggtaacaacttatg 83  Q
    ||||||||||||||||||||| | |||||||| ||| ||| | || ||||||||||| | |||| || ||| |||||||||||    
T  34205392 tgtttggattgacttatttgaacttatttactgacataagcatttatggaactattttggagagcttatggaaacaacttatg 34205310  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 159 - 199
Target Start/End: Complemental strand, 10303792 - 10303752
Alignment:
Q  159 gaaaagaatttgacttcattttatcttttgttatagaaata 199  Q
    ||||| |||||||||| ||||||||||||||||||||||||    
T  10303792 gaaaacaatttgactttattttatcttttgttatagaaata 10303752  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 203
Target Start/End: Original strand, 32969197 - 32969240
Alignment:
Q  160 aaaagaatttgacttcattttatcttttgttatagaaataactt 203  Q
    |||| |||||||||| |||||||||||||||||||||| |||||    
T  32969197 aaaataatttgactttattttatcttttgttatagaaacaactt 32969240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 167 - 201
Target Start/End: Original strand, 29117017 - 29117051
Alignment:
Q  167 tttgacttcattttatcttttgttatagaaataac 201  Q
    |||||||| ||||||||||||||||||||||||||    
T  29117017 tttgactttattttatcttttgttatagaaataac 29117051  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 165 - 199
Target Start/End: Original strand, 35095868 - 35095902
Alignment:
Q  165 aatttgacttcattttatcttttgttatagaaata 199  Q
    |||||||||| ||||||||||||||||||||||||    
T  35095868 aatttgactttattttatcttttgttatagaaata 35095902  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 208
Target Start/End: Original strand, 7096214 - 7096255
Alignment:
Q  167 tttgacttcattttatcttttgttatagaaataacttctaca 208  Q
    |||||||| |||||||||||||||||||||||| ||| ||||    
T  7096214 tttgactttattttatcttttgttatagaaatagcttataca 7096255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 208
Target Start/End: Original strand, 35135749 - 35135790
Alignment:
Q  167 tttgacttcattttatcttttgttatagaaataacttctaca 208  Q
    |||||||| |||||||||||||||||||||||| ||| ||||    
T  35135749 tttgactttattttatcttttgttatagaaatatcttataca 35135790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 7705917 - 7705949
Alignment:
Q  1 tgtttggattgacttatttgagcatatttacta 33  Q
    ||||||||||||||||||||||||||| |||||    
T  7705917 tgtttggattgacttatttgagcatatctacta 7705949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 159 - 199
Target Start/End: Complemental strand, 10363741 - 10363701
Alignment:
Q  159 gaaaagaatttgacttcattttatcttttgttatagaaata 199  Q
    ||||| ||||| |||| ||||||||||||||||||||||||    
T  10363741 gaaaacaatttaactttattttatcttttgttatagaaata 10363701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 167 - 199
Target Start/End: Complemental strand, 14295489 - 14295457
Alignment:
Q  167 tttgacttcattttatcttttgttatagaaata 199  Q
    |||||||| ||||||||||||||||||||||||    
T  14295489 tttgactttattttatcttttgttatagaaata 14295457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 167 - 199
Target Start/End: Original strand, 28586853 - 28586885
Alignment:
Q  167 tttgacttcattttatcttttgttatagaaata 199  Q
    |||||||| ||||||||||||||||||||||||    
T  28586853 tttgactttattttatcttttgttatagaaata 28586885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 167 - 199
Target Start/End: Original strand, 37063161 - 37063193
Alignment:
Q  167 tttgacttcattttatcttttgttatagaaata 199  Q
    |||||||| ||||||||||||||||||||||||    
T  37063161 tttgactttattttatcttttgttatagaaata 37063193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 167 - 199
Target Start/End: Complemental strand, 37968874 - 37968842
Alignment:
Q  167 tttgacttcattttatcttttgttatagaaata 199  Q
    |||||| ||||||||||||||||||||||||||    
T  37968874 tttgacctcattttatcttttgttatagaaata 37968842  T

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Target: scaffold0024 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 27567 - 27518
Alignment:
Q  159 gaaaagaatttgacttcattttatcttttgttatagaaataacttctaca 208  Q
    ||||| |||||||||| |||||||||| ||||||||||||||||| ||||    
T  27567 gaaaacaatttgactttattttatcttctgttatagaaataacttataca 27518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 208
Target Start/End: Original strand, 1161 - 1202
Alignment:
Q  167 tttgacttcattttatcttttgttatagaaataacttctaca 208  Q
    |||||||| |||||||||||||||||||||||| ||| ||||    
T  1161 tttgactttattttatcttttgttatagaaatagcttataca 1202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 208
Target Start/End: Original strand, 9862 - 9903
Alignment:
Q  167 tttgacttcattttatcttttgttatagaaataacttctaca 208  Q
    |||||||| ||||||| |||||||||||||||||||| ||||    
T  9862 tttgacttaattttattttttgttatagaaataacttataca 9903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 208
Target Start/End: Complemental strand, 2814 - 2773
Alignment:
Q  167 tttgacttcattttatcttttgttatagaaataacttctaca 208  Q
    |||||||| |||||||||||||||||||||||| ||| ||||    
T  2814 tttgactttattttatcttttgttatagaaatagcttataca 2773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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