View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4437_low_12 (Length: 279)
Name: NF4437_low_12
Description: NF4437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4437_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 63 - 264
Target Start/End: Original strand, 43602495 - 43602696
Alignment:
| Q |
63 |
gtttgtattagtgctatataggccaagagtagacactcttatatcaaaagcaatagcatgtgcttgtattctcaagtttagtcacttctcatgagtttac |
162 |
Q |
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| T |
43602495 |
gtttgtattagtgctatataggccaagagtagacactcttatatcaaatgcaatagcatgtgcttgtattctcaagtttagtcacttctcatcagtttac |
43602594 |
T |
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| Q |
163 |
ttatttcactagcagctgccatggatatcaaaagcgagtgcaattctagcaggaagaccaaagaattgggaagattttgctatgatatcgagcacacaaa |
262 |
Q |
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| T |
43602595 |
ttatttcactagcagctgccatggatatcaaaagcgagtgcaattctagcaggaagaccaaagaattgggaagattttgctatgaaatcgagcacacaaa |
43602694 |
T |
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| Q |
263 |
ct |
264 |
Q |
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|| |
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| T |
43602695 |
ct |
43602696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 43602240 - 43602310
Alignment:
| Q |
1 |
catgggttccattcaattactttcatctttaaaattattattgatgccaacactcagcatgtgtttgtatt |
71 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43602240 |
catgggttccattcaattactttcatctttaaaattattattgatgccaacactcagcatgtgtttgtatt |
43602310 |
T |
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