View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4437_low_14 (Length: 267)
Name: NF4437_low_14
Description: NF4437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4437_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 13 - 249
Target Start/End: Original strand, 55896130 - 55896366
Alignment:
| Q |
13 |
cagaaacaggataactaatggttccttcttgcaaccgtgtgcttgtgtctataatgtttgaagtataggcttttgggcttccactggcttgtggaatagc |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55896130 |
cagaaacaggataactaatggttccttcttgcaaccgtgtgcttgtgtctataatgtttgaagtataggcttttgggcttccactggcttgtggaatagc |
55896229 |
T |
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| Q |
113 |
caccaaagcttgtgctccgatcatggcagggtcaagattgctgcttggattgatggcccaagcaacccacctatttgttgcagttattccagtatgtatg |
212 |
Q |
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||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55896230 |
caccaaagcttgtgctccgatcatggctgggtcaagatttctgcttggattgatggcccaagcaacccacctatttgttgcagttattccagtatgtatg |
55896329 |
T |
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| Q |
213 |
tatgctatgtctaatttgccacttgtttcatcgtatg |
249 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
55896330 |
tatgctatgtctaatttgccacttgtttcatcgtatg |
55896366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 13 - 249
Target Start/End: Complemental strand, 1028833 - 1028597
Alignment:
| Q |
13 |
cagaaacaggataactaatggttccttcttgcaaccgtgtgcttgtgtctataatgtttgaagtataggcttttgggcttccactggcttgtggaatagc |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1028833 |
cagaaacaggataactaatggttccttcttgcaaccgtgtgcttgtgtctacaatgtttgaagtataggcttttgggcttccactggcttgtggaatagc |
1028734 |
T |
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| Q |
113 |
caccaaagcttgtgctccgatcatggcagggtcaagattgctgcttggattgatggcccaagcaacccacctatttgttgcagttattccagtatgtatg |
212 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1028733 |
caccaaagcttgtgctccgatcatggccgggtcaagattgctgcttggattgatggcccaagcaacccacctatttgttgcagttattccagtatgtatg |
1028634 |
T |
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| Q |
213 |
tatgctatgtctaatttgccacttgtttcatcgtatg |
249 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
1028633 |
tatgctatgtctaatttgccacttgtttcatcgtatg |
1028597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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