View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4437_low_3 (Length: 485)
Name: NF4437_low_3
Description: NF4437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4437_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 13 - 467
Target Start/End: Complemental strand, 5349430 - 5348976
Alignment:
| Q |
13 |
cagaccattggacctagatcattgataatacatgtagctcactaacgaaataagataaactttgatactatcttaaaactcgagcctaatttaacctcac |
112 |
Q |
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| T |
5349430 |
cagaccattggacctatg-catgggtaatacatgtagctcactaacgaactaagataaacttcaatactatcttaaatttcgagcctaatttaatctcgc |
5349332 |
T |
|
| Q |
113 |
agaaccaacttcttagatgaggttt-acctaatctttaaaatttcatttagacatgttttttattcggcgcgtggtttggatttttcccaatatgtggat |
211 |
Q |
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| T |
5349331 |
aaaaccaactcgttagatgaggtttgacctagtctttaaaatttcatttagacatgttttttattcggcgtgtgatttggatttttcccaatatgcggat |
5349232 |
T |
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| Q |
212 |
ttatggcaggttttataaaatcttaacatgtttgctatttgttttttctgctgcatttaggccttgtgggactttcactctcttatgctttgtcattaac |
311 |
Q |
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| T |
5349231 |
ttatggcaggttttataaaatcttaacatgtttactatttgttttttctgctgcatttaggccttgtgggactttcactctcttatgctttgtcattaac |
5349132 |
T |
|
| Q |
312 |
aagatcccaaatgtattatactacatggtcttgtagcatatcaaccttcataatctctgtggaaagaatcaagcaattcatgcagataccacaagagcct |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5349131 |
aagatcccaaatgtattatactacatggtcttgtagcatatcaaccttcataatctctgtggaaagaatcaagcaattcatgcagataccacaagagcct |
5349032 |
T |
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| Q |
412 |
ccaaaattattggaggatagaagaccagcatcttcatggccttctaagggaaggat |
467 |
Q |
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| T |
5349031 |
ccaaaattattggaggatagaaggccaccatcttcatggccttctaagggaaggat |
5348976 |
T |
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