View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4437_low_8 (Length: 373)
Name: NF4437_low_8
Description: NF4437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4437_low_8 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 12 - 373
Target Start/End: Complemental strand, 36467656 - 36467295
Alignment:
| Q |
12 |
atgaattcaatttaaacatctaatttaaggtgattgttgtggatggtctaaaatgtgaaagtggtgactcattcctctatgccaatccccattgtttaat |
111 |
Q |
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| T |
36467656 |
atgaattcaatttaaacatctaatttagggtgcttgttgtggatggtctaagatgtgaaagtggtgactcattcctctatgccaatccccattgtttaat |
36467557 |
T |
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| Q |
112 |
ttgagtcatttatttgtatagagacaatatttattgagacaaggcataaagacaaaacatttattgagatttcttcttttcttactcgaaacatttaccg |
211 |
Q |
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| T |
36467556 |
ttgagtcatttatttgtatagagacaatatttattgagacaaggcatagagacaaaacatttattgagatttcttcttttcttactcaaaacatttaccg |
36467457 |
T |
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| Q |
212 |
agcggttatataacatttgatgtcaaagttttgaaaatctctacatgcattggtgtgattgtcttagtcttatcttgaaaactactcttgagctatcagt |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36467456 |
agcggttatataacatttgatgtcaaagttttgaaaatctctacatgcattggtgtgattgtcttagtcttatcttgaaaactactcttgagctatcagt |
36467357 |
T |
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| Q |
312 |
gtctacatttacatgatgatggttgtgcgtggatcagaaaggaggaacgtgaaatgggtaat |
373 |
Q |
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| T |
36467356 |
gtctacatttacatgatgatggttgtgcgtggatcagaaaggaggaacgtgaaatgggtaat |
36467295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 261
Target Start/End: Complemental strand, 36477179 - 36477108
Alignment:
| Q |
188 |
ttttcttactcgaaacatttaccgagcggttatataacatttgatgtcaaagttttgaaaatctctacatgcat |
261 |
Q |
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||||||||||| || ||||||||||| ||||| ||| ||||||||| || |||||||||||| | |||||||| |
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| T |
36477179 |
ttttcttactc--aatatttaccgagcagttatttaatatttgatgtgaaggttttgaaaatccccacatgcat |
36477108 |
T |
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