View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4438-Insertion-2 (Length: 147)

Name: NF4438-Insertion-2
Description: NF4438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4438-Insertion-2
NF4438-Insertion-2
[»] chr5 (10 HSPs)
chr5 (8-146)||(37704321-37704459)
chr5 (8-88)||(37437445-37437525)
chr5 (8-78)||(37698571-37698641)
chr5 (95-141)||(37641539-37641585)
chr5 (87-141)||(37698451-37698505)
chr5 (87-135)||(37391389-37391437)
chr5 (93-135)||(37441608-37441650)
chr5 (95-141)||(37534758-37534804)
chr5 (95-141)||(37595991-37596037)
chr5 (95-132)||(37713291-37713328)
[»] chr4 (1 HSPs)
chr4 (22-88)||(16841203-16841272)
[»] chr3 (1 HSPs)
chr3 (95-132)||(14554723-14554760)


Alignment Details
Target: chr5 (Bit Score: 135; Significance: 1e-70; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 135; E-Value: 1e-70
Query Start/End: Original strand, 8 - 146
Target Start/End: Complemental strand, 37704459 - 37704321
Alignment:
Q  8 tttggtccttgccccttagtttcaggttatgtttcctatataaatagaggctaatcaattggtatatcctaaatcatcaaaatgcggtccttttttattc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37704459 tttggtccttgccccttagtttcaggttatgtttcctatataaatagaggctaatcaattggtatatcctaaatcatcaaaatgcggtccttttttattc 37704360  T
Q  108 tattgccttattttacttttcacttgttgttgttattgc 146  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  37704359 tattgccttattttacttttcacttgttcttgttattgc 37704321  T

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Target: chr5; HSP #2
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 37437525 - 37437445
Alignment:
Q  8 tttggtccttgccccttagtttcaggttatgtttcctatataaatagaggctaatcaattggtatatcctaaatcatcaaa 88  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  37437525 tttggtccttgccccttagtttcaagttatgtttcctatataaatagaggctaatcatttggtatatcctaaatcatcaaa 37437445  T

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Target: chr5; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 8 - 78
Target Start/End: Complemental strand, 37698641 - 37698571
Alignment:
Q  8 tttggtccttgccccttagtttcaggttatgtttcctatataaatagaggctaatcaattggtatatccta 78  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37698641 tttggtcctttccccgtagtttcaggttatgtttcctatataaatagaggctaatcaattggtatatccta 37698571  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 95 - 141
Target Start/End: Complemental strand, 37641585 - 37641539
Alignment:
Q  95 tccttttttattctattgccttattttacttttcacttgttgttgtt 141  Q
    ||||||||||||| ||||||||||||||| |||||||| ||||||||    
T  37641585 tccttttttattccattgccttattttacctttcacttcttgttgtt 37641539  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 87 - 141
Target Start/End: Complemental strand, 37698505 - 37698451
Alignment:
Q  87 aaatgcggtccttttttattctattgccttattttacttttcacttgttgttgtt 141  Q
    ||||| ||||||||||||||||||||||||||||| | |||||||| || |||||    
T  37698505 aaatggggtccttttttattctattgccttattttgcctttcactttttcttgtt 37698451  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 37391389 - 37391437
Alignment:
Q  87 aaatgcggtccttttttattctattgccttattttacttttcacttgtt 135  Q
    ||||| ||||||| |||||| |||||||||||||||| |||||||||||    
T  37391389 aaatggggtccttgtttattttattgccttattttacctttcacttgtt 37391437  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 135
Target Start/End: Complemental strand, 37441650 - 37441608
Alignment:
Q  93 ggtccttttttattctattgccttattttacttttcacttgtt 135  Q
    |||||||||||||| |||||||||||||||| |||||| ||||    
T  37441650 ggtccttttttattttattgccttattttacctttcacatgtt 37441608  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 141
Target Start/End: Complemental strand, 37534804 - 37534758
Alignment:
Q  95 tccttttttattctattgccttattttacttttcacttgttgttgtt 141  Q
    ||||||||||||| ||||||||||||||| |||||||| || |||||    
T  37534804 tccttttttattccattgccttattttacctttcactttttcttgtt 37534758  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 141
Target Start/End: Complemental strand, 37596037 - 37595991
Alignment:
Q  95 tccttttttattctattgccttattttacttttcacttgttgttgtt 141  Q
    ||||||||||||| ||||||||||||||| |||||||| || |||||    
T  37596037 tccttttttattccattgccttattttacctttcactttttcttgtt 37595991  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 95 - 132
Target Start/End: Complemental strand, 37713328 - 37713291
Alignment:
Q  95 tccttttttattctattgccttattttacttttcactt 132  Q
    ||||||||||||| ||||||||||||||| ||||||||    
T  37713328 tccttttttattccattgccttattttacctttcactt 37713291  T

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Target: chr4 (Bit Score: 48; Significance: 9e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 9e-19
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 16841203 - 16841272
Alignment:
Q  22 cttagtttcaggttatgtttcctatataaata---gaggctaatcaattggtatatcctaaatcatcaaa 88  Q
    ||||||||||||||||||||||||||||||||   ||||||||||| |||||||||| ||||||||||||    
T  16841203 cttagtttcaggttatgtttcctatataaatagaggaggctaatcagttggtatatcgtaaatcatcaaa 16841272  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 95 - 132
Target Start/End: Complemental strand, 14554760 - 14554723
Alignment:
Q  95 tccttttttattctattgccttattttacttttcactt 132  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  14554760 tccttttttattctattgccttattttacctttcactt 14554723  T

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