View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4438_high_2 (Length: 642)
Name: NF4438_high_2
Description: NF4438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4438_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 12 - 473
Target Start/End: Complemental strand, 56389151 - 56388697
Alignment:
| Q |
12 |
agagaggcaagttcgtcgacgcggaacacatttttgtctttatcgaatttgtttgtggggtgagaagaatgggagaggtagatttgtttgacaagcaaac |
111 |
Q |
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| T |
56389151 |
agagaggcaagttcgtcgacgccgaacacatttttgtatttatcgaatttgtttgtggggtgagaagaatgggagaagtagatttgtttgacaagcaaac |
56389052 |
T |
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| Q |
112 |
caagatcgaactgcatgaaacgagtattgatggaagctttttaaattagttgcccataagaagaattggaagaggtagagtacgtgaaagacaagtgaga |
211 |
Q |
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| T |
56389051 |
caagatcgaactgcatgaaacgagtattgatggaagctttttaaattagttgcccataagaagaattggaagaggtagagtacgtgaaagacaagtgaga |
56388952 |
T |
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| Q |
212 |
gtgttaaaattaaaataatata---------aatacgaaccatgtattcaatctaaatgttgatgttaaactctttcatacaagaaaact-nnnnnnnnn |
301 |
Q |
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| T |
56388951 |
gtgttaaaattaaaataatatagtataatataatacgaagcatgtattcaatctaaatgttgatgttaaactctttcatacaagaaaactcaaaaaaaaa |
56388852 |
T |
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| Q |
302 |
ngttacataccaaacacnnnnnnnatttaataaaatacataagaattttttaagttagtaaaacaaaattcccaataatgtatatatannnnnnnaacgc |
401 |
Q |
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| T |
56388851 |
agttacataccaaacacttt-----tttaataaaatacataagaattttttaagttagtaaaacaaaattcccaatagtgtattttt--ttttttaacgc |
56388759 |
T |
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| Q |
402 |
aatacatatgcatcctcggaagtgtagaaaagtgattctcatagtatcattatatttggacggagccttcgt |
473 |
Q |
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| T |
56388758 |
aatacatatgcatcctcgg----------aagtgattctcatagtatcattatatttggacggagccttcgt |
56388697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 484 - 627
Target Start/End: Complemental strand, 56388653 - 56388500
Alignment:
| Q |
484 |
caaggaatgtcgatgtttatccaaataaaggataggattgcggtgtgtacgtggaagtgaggagggatgagaatatgtacatgtggggtggtcggtgg-- |
581 |
Q |
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| T |
56388653 |
caaggaatgtcgatgtttatccaaataaaggatgggattgcggtgtgtacgtggaagtgaggagggatgagaatatgtacatgtggggtggtcggtgggg |
56388554 |
T |
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| Q |
582 |
--------gcatggtgaaggtgttcaaagtgtgggtgactgacccaccaaaaaa |
627 |
Q |
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| T |
56388553 |
ggatccttgcatggtgaaggtgttcaaagtgtgggtgactgacccaccaaaaaa |
56388500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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