View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4438_low_1 (Length: 1038)
Name: NF4438_low_1
Description: NF4438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4438_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 656; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 656; E-Value: 0
Query Start/End: Original strand, 210 - 1021
Target Start/End: Original strand, 2618659 - 2619469
Alignment:
| Q |
210 |
caaaagcttgcaataactaacagcaaaagcttgaaatgaagttctgatttaatactttcaatttccatttcagttataatttaaaaagaatcaaaacaat |
309 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2618659 |
caaaagcttgcaataactaacaggaaaagcttgaaatgaagttctgatttaatactttcaatttccatttcagttataatttaaaa-gaatcaaaacaat |
2618757 |
T |
|
| Q |
310 |
gctctttgtgtgactgtattgtagtgctaattgacactaacaaagtctacatttctttcagtgttccatgcagaaggggaatctgcaagacaccattaga |
409 |
Q |
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||||||||| | |||||||||||||||||||||| |||||||||| || |||||||||||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
2618758 |
gctctttgtataactgtattgtagtgctaattgatactaacaaaggctccatttctttcagcgttccatgcagaaggggaatctgcaagacaccgttaga |
2618857 |
T |
|
| Q |
410 |
attgacatcttctcaattgattgcaagtgaggtgtttccacttttcatagtgaaagctcttatctacccaggatcacttgcaaaggctattttcaagctg |
509 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2618858 |
attgacatgttctcaattgattgcaagtgaggtgtttccacttttcatagtgaaagctcttatctacccaggatccgttgcaaaggctattttcaagctg |
2618957 |
T |
|
| Q |
510 |
aaaaccatcccaagttacagaaacttgttgcacaatttcaatacaaggacaatctctgccgtatcagaactccaacgcctagaggttgattactaactga |
609 |
Q |
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||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2618958 |
aaaacaatcccaagttacagaaacctgttgcacaatttcaatacaaggacaatctctgccgtatcagaactccaacgcctagaggttgcttactaactga |
2619057 |
T |
|
| Q |
610 |
aaagaaaaacattggcttaacataacggttacgtcagtgctacagcgttatagtgtagcgaacaaattgatattcttctgcattatgctatttagtagaa |
709 |
Q |
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| T |
2619058 |
aaagaaaaacaatggcttaacataacggttacgtcaagtctatagcgttatagtgtagcgaacaaattgatattcttctgcattatgctatttaatacaa |
2619157 |
T |
|
| Q |
710 |
aattttgccaaatagcggctctatagcactgttgcatagcagaattttagcaagctgatattttttgcaatctgcgattgacaacaccgcctcaaattgt |
809 |
Q |
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|||||||||||||||| |||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||| |||||||||||| ||||||||||| |
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| T |
2619158 |
aattttgccaaatagcatctctatagcactgtcgcatagcagaattttaacaaactgatattttttgcaatctgcaattgacaacaccacctcaaattgt |
2619257 |
T |
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| Q |
810 |
attgataaatgaactttctgaagggtttagctttgccactcatttttcaagttgggttcttcctgcaggttcttgcaggaagctatttggctgtaggagg |
909 |
Q |
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|| | ||||||||| |||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
2619258 |
atcggtaaatgaaccttctgaagggtttagctttgacactcattttttaagttgggtttttcctgcaggttcttgcaggaagctatttggctgtaggagg |
2619357 |
T |
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| Q |
910 |
agcaatcttgggtttgataaaaccaggaagaatgggactttttggaatacttcttcttatgtggggtctgattagagagctcatcatgatagaatctggt |
1009 |
Q |
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||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
2619358 |
agcaatcttgggtctgttaaaaccaggaagaatgggactttttggaatacttcttcttatgtggggtctgattagagaactcatcatgatagaatctggt |
2619457 |
T |
|
| Q |
1010 |
ttcagtcatgca |
1021 |
Q |
| |
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|||||||||||| |
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| T |
2619458 |
ttcagtcatgca |
2619469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 12 - 148
Target Start/End: Original strand, 2618081 - 2618216
Alignment:
| Q |
12 |
agcagagagcgagttattatactgatacggtgcagcagaatcgcttattatatgatgccattaaacatcaaattttcattagttggactccagctcctat |
111 |
Q |
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||||||||| ||| | ||||||||||| | |||| |||| |||||||| ||||||||||||||||||||| ||||||||||| ||||||| ||||||| |
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| T |
2618081 |
agcagagagtgagaaactatactgatacagagcagtagaactgcttattacatgatgccattaaacatcaaagtttcattagtt-gactccacctcctat |
2618179 |
T |
|
| Q |
112 |
agggtgggtaaaattaaatacgggtggtgctagtaga |
148 |
Q |
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|||||||||||||||||||||| ||||||||||||| |
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| T |
2618180 |
tgggtgggtaaaattaaatacggatggtgctagtaga |
2618216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 730 - 794
Target Start/End: Complemental strand, 43391520 - 43391456
Alignment:
| Q |
730 |
ctatagcactgttgcatagcagaattttagcaagctgatattttttgcaatctgcgattgacaac |
794 |
Q |
| |
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|||||||||||||||||||||||| | | ||| ||| |||||||||| |||||||||||||||| |
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| T |
43391520 |
ctatagcactgttgcatagcagaactcaaacaaactgctattttttgcgatctgcgattgacaac |
43391456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 730 - 796
Target Start/End: Complemental strand, 25981930 - 25981864
Alignment:
| Q |
730 |
ctatagcactgttgcatagcagaattttagcaagctgatattttttgcaatctgcgattgacaacac |
796 |
Q |
| |
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||||||||||||||||||||||||||| | ||| || ||| || ||| |||||| ||||||||||| |
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| T |
25981930 |
ctatagcactgttgcatagcagaatttaaacaacctcgtatattctgctatctgcaattgacaacac |
25981864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 670 - 754
Target Start/End: Original strand, 17473144 - 17473226
Alignment:
| Q |
670 |
aacaaattgatattcttctgcattatgctatttagtagaaaattttgccaaatagcggctctatagcactgttgcatagcagaat |
754 |
Q |
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|||||| || |||| || |||| |||||||||||||| ||||| ||| |||||||| | ||||| |||||||||| |||||||| |
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| T |
17473144 |
aacaaaatgctattgttttgcaatatgctatttagtacaaaatattgtcaaatagc--cgctataacactgttgcaaagcagaat |
17473226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 721 - 793
Target Start/End: Original strand, 42822651 - 42822723
Alignment:
| Q |
721 |
atagcggctctatagcactgttgcatagcagaattttagcaagctgatattttttgcaatctgcgattgacaa |
793 |
Q |
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|||||||| ||||||||||||||||||| |||||| | ||| |||||||||| || |||||| |||||||| |
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| T |
42822651 |
atagcggcgctatagcactgttgcatagtggaatttgaacaaactgatattttccgctatctgcaattgacaa |
42822723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 696 - 756
Target Start/End: Complemental strand, 2991011 - 2990951
Alignment:
| Q |
696 |
gctatttagtagaaaattttgccaaatagcggctctatagcactgttgcatagcagaattt |
756 |
Q |
| |
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||||||||||| ||||| ||| ||||||| ||| ||||| |||||||||||||| |||||| |
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| T |
2991011 |
gctatttagtacaaaatgttgtcaaatagtggccctatatcactgttgcatagcggaattt |
2990951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 697 - 796
Target Start/End: Original strand, 27725540 - 27725639
Alignment:
| Q |
697 |
ctatttagtagaaaattttgccaaatagcggctctatagcactgttgcatagcagaattttagcaagctgatattttttgcaatctgcgattgacaacac |
796 |
Q |
| |
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|||||||||| ||||| ||| ||||||||||| |||||||| |||| ||| ||||||| | ||| ||| || ||||||| |||||| |||||||||| |
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| T |
27725540 |
ctatttagtacaaaatattgtcaaatagcggcactatagcattgttcggtagtagaatttgatcaaactgctactttttgcgatctgcagttgacaacac |
27725639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 721 - 762
Target Start/End: Complemental strand, 41846778 - 41846737
Alignment:
| Q |
721 |
atagcggctctatagcactgttgcatagcagaattttagcaa |
762 |
Q |
| |
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|||||||| ||||||||||| ||||||||||||||| ||||| |
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| T |
41846778 |
atagcggcgctatagcactgctgcatagcagaatttgagcaa |
41846737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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