View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4438_low_10 (Length: 356)
Name: NF4438_low_10
Description: NF4438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4438_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 47322504 - 47322151
Alignment:
| Q |
1 |
ttggtaccttccacatatatcaaacccataatcatcaatagatccatcatgatctaccaaccattgaagnnnnnnnnt---------------tacaggt |
85 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
47322504 |
ttggtaccttccacatatatcaaacccataatcatcaatagatccatcatgatctaccaaccattgaagaaaaaaaattcttaataaaaaaattacaggt |
47322405 |
T |
|
| Q |
86 |
gtgaggtgaagttgaagcaagcgttggtattggagcttcgagaaggttgaggagggaaagtaaggaagctttttcgttgtggagattgtgtttcgcttca |
185 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47322404 |
gtgaggtgaagttgaagcaagcgttggtattggagcttcgagaaggttgaggagggaaagtaaggaagctttttcgttgtggagattgtgtttcgcttca |
47322305 |
T |
|
| Q |
186 |
acagtggtggtcggaactcacgcggcggaggagtgttgaggaagaaggttgcatgtgaaggagagatgtggtagaggaaaggggaacaatcaaccgcaga |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47322304 |
acagtggtggtcggaactcacgcggcggaggagtgttgaggaagaaggttgcatgtgaaggagagatgtggtagaggaaaggggaacaatcaaccgcaga |
47322205 |
T |
|
| Q |
286 |
gggagtatcatagtaatttttagccattggatagtgaagctctatggtacttag |
339 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47322204 |
gggagtatcatagtaatttttagccattggatagtgaagctctatggtacttag |
47322151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 47337300 - 47336947
Alignment:
| Q |
1 |
ttggtaccttccacatatatcaaacccataatcatcaatagatccatcatgatctaccaaccattgaagnnnnnnnnt---------------tacaggt |
85 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
47337300 |
ttggtaccttccacatatatcaaacccataatcatcaatagatccatcatgatctaccaaccattgaagaaaaaaaattcttaataaaaaaattacaggt |
47337201 |
T |
|
| Q |
86 |
gtgaggtgaagttgaagcaagcgttggtattggagcttcgagaaggttgaggagggaaagtaaggaagctttttcgttgtggagattgtgtttcgcttca |
185 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47337200 |
gtgaggtgaagttgaagcaagcgttggtattggagcttcgagaaggttgaggagggaaagtaaggaagctttttcgttgtggagattgtgtttcgcttca |
47337101 |
T |
|
| Q |
186 |
acagtggtggtcggaactcacgcggcggaggagtgttgaggaagaaggttgcatgtgaaggagagatgtggtagaggaaaggggaacaatcaaccgcaga |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47337100 |
acagtggtggtcggaactcacgcggcggaggagtgttgaggaagaaggttgcatgtgaaggagagatgtggtagaggaaaggggaacaatcaaccgcaga |
47337001 |
T |
|
| Q |
286 |
gggagtatcatagtaatttttagccattggatagtgaagctctatggtacttag |
339 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47337000 |
gggagtatcatagtaatttttagccattggatagtgaagctctatggtacttag |
47336947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 191 - 293
Target Start/End: Complemental strand, 40337186 - 40337085
Alignment:
| Q |
191 |
ggtggtcggaactca-cgcggcggaggagtgttgaggaagaaggttgcatgtgaaggagagatgtggtagaggaaagg--ggaacaatcaaccgcagagg |
287 |
Q |
| |
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||||||||||||||| |||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||| ||||||| |
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| T |
40337186 |
ggtggtcggaactcagcgcgacggaggagggttgaggaagaaggttg----tgaaggagagatgtggtagaggaaagggagaaacaatcaattgcagagg |
40337091 |
T |
|
| Q |
288 |
gagtat |
293 |
Q |
| |
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|||||| |
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|
| T |
40337090 |
gagtat |
40337085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 24668272 - 24668461
Alignment:
| Q |
1 |
ttggtaccttccacatatatcaaacccataatcatcaatagatccatcatgatctaccaaccattgaagnnnnnnnn-------------ttacaggtgt |
87 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
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| T |
24668272 |
ttggtaccttcaacatatatcaaacccataatcatcaattgatccatcatgatctaccaaccattgaagaaaaacaaaatcttaaaaaaattacaggtgt |
24668371 |
T |
|
| Q |
88 |
gaggtgaagttgaagcaagcgttggtattggagcttcgagaaggttgaggagggaaagtaaggaagctttttcgttgtggagattgtgtt |
177 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
24668372 |
gaggtgaagttgaagcaagctctggtattggagcttcgagaaggttgaggagggaaagtaaggaagcttttttgtagtggagattgtgtt |
24668461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 167 - 300
Target Start/End: Complemental strand, 46950950 - 46950810
Alignment:
| Q |
167 |
gagattgtgtttc-gcttc-aacagt--ggtggtcggaactca-cgcggcggaggagtgttgaggaagaaggttgcatgtgaaggagagatgtggtagag |
261 |
Q |
| |
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||||||||||||| ||||| |||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||| || ||||||||||||||||||| |
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| T |
46950950 |
gagattgtgtttccgcttccaacagtacggtggtcggaactcagcgcggcggaggagggttgaggaagaaggttgcacgtcaaggagagatgtggtagag |
46950851 |
T |
|
| Q |
262 |
gaaagg--ggaacaatcaaccgcagagggagtatcatagta |
300 |
Q |
| |
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|||||| | |||||||||| ||||| ||||||| |||||| |
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| T |
46950850 |
gaaagggagaaacaatcaactgcagatggagtattatagta |
46950810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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