View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4438_low_13 (Length: 249)
Name: NF4438_low_13
Description: NF4438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4438_low_13 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 7 - 249
Target Start/End: Complemental strand, 226245 - 226007
Alignment:
| Q |
7 |
taaattatacttggacttttaactagattaatatactttgacttctacttattaggaaggatatatcattttttggttgtgggaaggatatatcatatca |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
226245 |
taaattatacttggacttttaactagattaatatactttgacttctacttattaggaaggatat--cattttttggttgtgggaaggatatatcatatca |
226148 |
T |
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| Q |
107 |
taatcaagcaaagaaatacattgggtgttaagtattcgtaaaatcccccattttaatttttgaagtctgaactaaaggtgatttgagtttataacttttg |
206 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
226147 |
taatcaagcaa-gaaatacattgggtgttaagtattcgtaaaa-cccccattttactttttgaagtctgaactaaaggtgatttgagtttataacttttg |
226050 |
T |
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| Q |
207 |
aacttcaaattgactaaacaagtattagagaactcttggtcat |
249 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
226049 |
aacttcaaattgactaaacaagtattagagaactcttggtcat |
226007 |
T |
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