View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4438_low_16 (Length: 237)
Name: NF4438_low_16
Description: NF4438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4438_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 48493134 - 48493354
Alignment:
| Q |
1 |
agtcagtttaagttgtgcataaatgagtttcaaacaaccaaatttaaacaattcttgcaaaaacattctaagtgtttaatgcggtagagttaatggatat |
100 |
Q |
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| T |
48493134 |
agtcagtttaagttgtgcataaatgagtttcaaacaaccaaatttaaacaattcttgcaaaaacattctaagtgtttaatgcggtagagttaatggatat |
48493233 |
T |
|
| Q |
101 |
accaacaattgaaactcaaccaccaatataacttcattaatcacgaattcaaatgtcgttaatcataattttcaagtgtccaattgcatgtagatttgaa |
200 |
Q |
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| T |
48493234 |
accaacaattgaaactcaaccaccaatataacttcattaatcacgaattcgaatgtcgttaatcataattttcaagtgtccaattgcatgtagatttgaa |
48493333 |
T |
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| Q |
201 |
cacgcgaaagttgtggtaaat |
221 |
Q |
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| T |
48493334 |
cacgcgaaagttgtggtaaat |
48493354 |
T |
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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 203
Target Start/End: Complemental strand, 29136964 - 29136883
Alignment:
| Q |
122 |
accaatataacttcattaatcacgaattcaaatgtcgttaatcataattttcaagtgtccaattgcatgtagatttgaacac |
203 |
Q |
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| T |
29136964 |
accaatgtaacttcattaaacacgaatttggatgtggttaaccataattttcagatgttcaactacatgtagatttgaacac |
29136883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 203
Target Start/End: Original strand, 33577151 - 33577232
Alignment:
| Q |
122 |
accaatataacttcattaatcacgaattcaaatgtcgttaatcataattttcaagtgtccaattgcatgtagatttgaacac |
203 |
Q |
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| T |
33577151 |
accaatgtaacttcattaaccacaaatttgaatgtggttaaccattattttcagatgttcaactccatgtagatttgaacac |
33577232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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