View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4438_low_3 (Length: 595)
Name: NF4438_low_3
Description: NF4438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4438_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 10 - 284
Target Start/End: Complemental strand, 36556638 - 36556364
Alignment:
| Q |
10 |
gcacagatgaagatgattctcttggattgtattctgatgttgatgacacttttagaactgcaaagaaacatattaaagctcatattcatgaaggaatggt |
109 |
Q |
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| T |
36556638 |
gcacagatgaagatgattctcttggattatattctgatgttgatgacacttttagaactgcaaagaaacatattaaagctcatattcatgaaggaatggt |
36556539 |
T |
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| Q |
110 |
tggtgatcatgatgattctcctgatgttgcacacaacaatgttaatgtgttgggacattgatttgtttggatcatgatgatgatggtgtttgaggagagg |
209 |
Q |
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| T |
36556538 |
tggtgatcatgatgattctcctgatgttgcacacaacaatgttaatgtgttgggacattgatttgtttggatcatgatgatgatggtgtttgaggagagg |
36556439 |
T |
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| Q |
210 |
nnnnnnnnctgcaagtgatgagttgggttt-agttagaataatcagttgcatttagttgcaaatcttagagttcca |
284 |
Q |
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| T |
36556438 |
-tttttttctgcaagtgatgagttgggtttaatttagaataatcagttgcatttagttgcaaatcttagagttcca |
36556364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 323 - 574
Target Start/End: Complemental strand, 36556337 - 36556099
Alignment:
| Q |
323 |
cccatctttattgttatgcagaattcattttaatttagttaaattccatttatttttgcctaagaagtttatatattcaacnnnnnnnnng---tgatca |
419 |
Q |
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| T |
36556337 |
cccatctttattgttatgcagaattcattttaatttagttaaattccatttatttttgcctaagaagtttatatattcaacaaaaaaaaagaagtgatca |
36556238 |
T |
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| Q |
420 |
taacaagtatgcttaattacatatgttttcccaactatagaagtatacattcgtatatatactttgaatttgtcacaaaaaacatacaattttgtgtctt |
519 |
Q |
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| T |
36556237 |
taacaagtatgcttaattacatatgttttcccaactatagaagtatac--------------tttgaatttgtcacaaaaaacatacaattttgt--ctt |
36556154 |
T |
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| Q |
520 |
ataattaataagacctatcaaacatgtatcatatccggataagatttgtgtcttt |
574 |
Q |
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| T |
36556153 |
ataattaataagacctatcaaacatgtatcatatccggataagatttgtgtcttt |
36556099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 477 - 519
Target Start/End: Original strand, 28486672 - 28486714
Alignment:
| Q |
477 |
tatactttgaatttgtcacaaaaaacatacaattttgtgtctt |
519 |
Q |
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| T |
28486672 |
tatactatgaatttgtctcaaaaaacatacaattttgtttctt |
28486714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 490 - 518
Target Start/End: Complemental strand, 6291322 - 6291294
Alignment:
| Q |
490 |
tgtcacaaaaaacatacaattttgtgtct |
518 |
Q |
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| T |
6291322 |
tgtcacaaaaaacatacaattttgtgtct |
6291294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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