View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4438_low_4 (Length: 551)
Name: NF4438_low_4
Description: NF4438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4438_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 463; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 1 - 534
Target Start/End: Complemental strand, 36891511 - 36890978
Alignment:
| Q |
1 |
atttcatgtaataacctaaagttacaaaaaggctatatatataagcttatgacataagctaattccttctttttacatgctcaagttaagttattatccc |
100 |
Q |
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| T |
36891511 |
atttcatgtaataacctaaagttacaaaaaggctatatatataagcttatgacataagctaattccttctttttacatgctcaagttaagttattatccc |
36891412 |
T |
|
| Q |
101 |
ttttggggaacaaatatctatgatgttgtatcagtgaagacacattaaatcatgtatcagttagttaagcatcaatcaaaggaataaagcnnnnnnnnnn |
200 |
Q |
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| T |
36891411 |
ttttggggaacaaatatctatgatgttgtatcagtgaagacacattaaatcatgtatcagttagttaagcatcaatcaaaggaataaagcaaaaaaatta |
36891312 |
T |
|
| Q |
201 |
nnnnnnnnnnnggaagaccgatggcattagaatccatttttatcgcataccgaatagagtggccatcaaccctatagagaagaaataatataaagtggtg |
300 |
Q |
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| T |
36891311 |
aacataaaaaaggaagaccgatggcattagaatccatttttatcgcataccgaatagagtggccatcaaccctatagagaagaaataatataaagtggta |
36891212 |
T |
|
| Q |
301 |
tagttatctggtaacttcatcttgttagaatctgaaccagcctccatctttctcaaatttgatctcattgctttttcatgatccagtggttccacgagta |
400 |
Q |
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| T |
36891211 |
tagttatctggtaacttcatcttgttagaatctgaaccagcctccatctttctcaaatttgatctcattgttttttcatgatccagtggttccacgagta |
36891112 |
T |
|
| Q |
401 |
tgccttaatttggcaacaaacaaattaaaatactcaaatcacatatatagtacatttttatatgtcataatataaatgttacataattctccaacacatg |
500 |
Q |
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| T |
36891111 |
tgccttaatttggcaacaaacaaattaaaatactcaaatcacatatatagtacatttttatatgtcataatataaatgttacataattctccaacacatg |
36891012 |
T |
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| Q |
501 |
tatatgtacttacagtggtataggattcgcttat |
534 |
Q |
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| T |
36891011 |
tatatgtacttacagtggtataggattcgcttat |
36890978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 288 - 428
Target Start/End: Complemental strand, 36878162 - 36878022
Alignment:
| Q |
288 |
atataaagtggtgtagttatctggtaacttcatcttgttagaatctgaaccagcctccatctttctcaaatttgatctcattgctttttcatgatccagt |
387 |
Q |
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|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
36878162 |
atataaagtggtatagttatctggtaacttcatcttgttggaatctgaaccagcctccatctttctcaaatttgacctcattgctttttcatgatccagt |
36878063 |
T |
|
| Q |
388 |
ggttccacgagtatgccttaatttggcaacaaacaaattaa |
428 |
Q |
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| T |
36878062 |
ggttccacgagtatgccttaatttgtcaacaaacaaattaa |
36878022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 106
Target Start/End: Complemental strand, 36899716 - 36899683
Alignment:
| Q |
73 |
ttacatgctcaagttaagttattatcccttttgg |
106 |
Q |
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| T |
36899716 |
ttacatgctcaagttaagttattatcccatttgg |
36899683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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